Protein–RNA interactions for Protein: P48380

RFX3, Transcription factor RFX3, humanhuman

Predictions only

Length 749 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3P48380 AC074124.1-201ENST00000502368 375 ntTSL 3 BASIC1.36□□□□□ -2.19
RFX3P48380 AC027343.1-201ENST00000504765 407 ntTSL 4 BASIC1.36□□□□□ -2.19
RFX3P48380 AC025465.3-201ENST00000510570 311 ntBASIC1.36□□□□□ -2.19
RFX3P48380 CARD18-203ENST00000532895 422 ntTSL 2 BASIC1.36□□□□□ -2.19
RFX3P48380 AC026765.1-201ENST00000547876 435 ntTSL 3 BASIC1.36□□□□□ -2.19
RFX3P48380 AC126323.6-201ENST00000561701 451 ntTSL 3 BASIC1.36□□□□□ -2.19
RFX3P48380 AC009754.1-201ENST00000566282 540 ntTSL 4 BASIC1.36□□□□□ -2.19
RFX3P48380 SNORA77B-201ENST00000578179 125 ntBASIC1.36□□□□□ -2.19
RFX3P48380 AP001496.1-201ENST00000579113 471 ntTSL 4 BASIC1.36□□□□□ -2.19
RFX3P48380 AP006219.1-201ENST00000580258 472 ntTSL 3 BASIC1.36□□□□□ -2.19
RFX3P48380 MIR4303-201ENST00000581299 66 ntBASIC1.36□□□□□ -2.19
RFX3P48380 RN7SKP299-201ENST00000606679 301 ntBASIC1.36□□□□□ -2.19
RFX3P48380 SNORA43.4-201ENST00000629559 138 ntBASIC1.36□□□□□ -2.19
RFX3P48380 AP3S1-209ENST00000640413 489 ntTSL 5 BASIC1.36□□□□□ -2.19
RFX3P48380 MIR337-201ENST00000362281 93 ntBASIC1.35□□□□□ -2.19
RFX3P48380 RNU6-227P-201ENST00000362865 103 ntBASIC1.35□□□□□ -2.19
RFX3P48380 RNU1-76P-201ENST00000362903 159 ntBASIC1.35□□□□□ -2.19
RFX3P48380 RNU6-271P-201ENST00000363858 105 ntBASIC1.35□□□□□ -2.19
RFX3P48380 RNU6-1119P-201ENST00000384349 108 ntBASIC1.35□□□□□ -2.19
RFX3P48380 RNU6ATAC2P-201ENST00000387943 126 ntBASIC1.35□□□□□ -2.19
RFX3P48380 SNORD37.1-201ENST00000390968 65 ntBASIC1.35□□□□□ -2.19
RFX3P48380 RNU1-78P-201ENST00000391248 165 ntBASIC1.35□□□□□ -2.19
RFX3P48380 FGF7P8-201ENST00000402994 292 ntBASIC1.35□□□□□ -2.19
RFX3P48380 MTCO2P16-201ENST00000436962 677 ntBASIC1.35□□□□□ -2.19
RFX3P48380 MAMDC2-AS1-205ENST00000451488 317 ntTSL 3 BASIC1.35□□□□□ -2.19
RFX3P48380 snoU13.9-201ENST00000458927 103 ntBASIC1.35□□□□□ -2.19
RFX3P48380 FO393415.2-201ENST00000480085 343 ntBASIC1.35□□□□□ -2.19
RFX3P48380 AC145146.2-202ENST00000508118 326 ntTSL 3 BASIC1.35□□□□□ -2.19
RFX3P48380 AC091874.1-201ENST00000511402 339 ntBASIC1.35□□□□□ -2.19
RFX3P48380 RNU5F-4P-201ENST00000516581 114 ntBASIC1.35□□□□□ -2.19
RFX3P48380 RNU6-1069P-201ENST00000516612 133 ntBASIC1.35□□□□□ -2.19
RFX3P48380 AC104383.1-201ENST00000530297 370 ntBASIC1.35□□□□□ -2.19
RFX3P48380 AC245008.1-201ENST00000608123 476 ntBASIC1.35□□□□□ -2.19
RFX3P48380 HTN1-205ENST00000610341 536 ntAPPRIS P1 TSL 1 (best) BASIC1.35□□□□□ -2.19
RFX3P48380 MIR7974-201ENST00000615835 79 ntBASIC1.35□□□□□ -2.19
RFX3P48380 SPTSSB-205ENST00000620149 231 ntAPPRIS P1 BASIC1.35□□□□□ -2.19
RFX3P48380 AC139792.3-201ENST00000623525 224 ntBASIC1.35□□□□□ -2.19
RFX3P48380 ASPN-202ENST00000375544 2470 ntAPPRIS P1 TSL 1 (best) BASIC1.35□□□□□ -2.19
RFX3P48380 VPS13A-206ENST00000376646 2262 ntTSL 5 BASIC1.35□□□□□ -2.19
RFX3P48380 AC009541.1-201ENST00000438279 2662 ntBASIC1.34□□□□□ -2.19
RFX3P48380 RNY1P10-201ENST00000363268 113 ntBASIC1.34□□□□□ -2.19
RFX3P48380 Y_RNA.359-201ENST00000365498 102 ntBASIC1.34□□□□□ -2.19
RFX3P48380 SNORA17.3-201ENST00000391159 129 ntBASIC1.34□□□□□ -2.19
RFX3P48380 DEFB108C-201ENST00000400154 252 ntBASIC1.34□□□□□ -2.19
RFX3P48380 MIR208B-201ENST00000401172 77 ntBASIC1.34□□□□□ -2.19
RFX3P48380 AL663109.1-201ENST00000411498 844 ntBASIC1.34□□□□□ -2.19
RFX3P48380 RPL21P111-201ENST00000418453 477 ntBASIC1.34□□□□□ -2.19
RFX3P48380 INTS6L-AS1-201ENST00000430820 398 ntTSL 3 BASIC1.34□□□□□ -2.19
RFX3P48380 AC007395.1-201ENST00000451333 677 ntBASIC1.34□□□□□ -2.19
RFX3P48380 AC016925.1-201ENST00000458303 298 ntBASIC1.34□□□□□ -2.19
RFX3P48380 RNU7-14P-201ENST00000459331 62 ntBASIC1.34□□□□□ -2.19
RFX3P48380 U8.21-201ENST00000459536 136 ntBASIC1.34□□□□□ -2.19
RFX3P48380 TOMM22P6-201ENST00000465035 409 ntBASIC1.34□□□□□ -2.19
RFX3P48380 RNA5SP401-201ENST00000515920 127 ntBASIC1.34□□□□□ -2.19
RFX3P48380 RNU6-1098P-201ENST00000516772 96 ntBASIC1.34□□□□□ -2.19
RFX3P48380 RNU6-612P-201ENST00000516909 102 ntBASIC1.34□□□□□ -2.19
RFX3P48380 AC013417.1-201ENST00000549896 271 ntTSL 5 BASIC1.34□□□□□ -2.19
RFX3P48380 AC009107.1-201ENST00000561923 330 ntTSL 3 BASIC1.34□□□□□ -2.19
RFX3P48380 NCRUPAR_2.1-201ENST00000616308 99 ntBASIC1.34□□□□□ -2.19
RFX3P48380 ST7-OT4_2.1-201ENST00000619089 172 ntBASIC1.34□□□□□ -2.19
RFX3P48380 AL161722.3-201ENST00000605789 2983 ntBASIC1.34□□□□□ -2.2
RFX3P48380 CHST9-202ENST00000581714 2043 ntAPPRIS P1 TSL 1 (best) BASIC1.33□□□□□ -2.2
RFX3P48380 Y_RNA.67-201ENST00000362870 100 ntBASIC1.33□□□□□ -2.2
RFX3P48380 RNU6-38P-201ENST00000384085 107 ntBASIC1.33□□□□□ -2.2
RFX3P48380 RNU6-1026P-201ENST00000384465 108 ntBASIC1.33□□□□□ -2.2
RFX3P48380 SNORD73A-201ENST00000386062 65 ntBASIC1.33□□□□□ -2.2
RFX3P48380 SNRPG-202ENST00000413456 398 ntTSL 3 BASIC1.33□□□□□ -2.2
RFX3P48380 AP1B1P2-201ENST00000416196 106 ntBASIC1.33□□□□□ -2.2
RFX3P48380 BTF3P4-201ENST00000418852 495 ntBASIC1.33□□□□□ -2.2
RFX3P48380 MS4A4E-203ENST00000425663 350 ntTSL 1 (best) BASIC1.33□□□□□ -2.2
RFX3P48380 AC099677.2-201ENST00000436385 175 ntBASIC1.33□□□□□ -2.2
RFX3P48380 MCHR2-AS1-203ENST00000451220 429 ntTSL 3 BASIC1.33□□□□□ -2.2
RFX3P48380 LINC01077-201ENST00000452288 413 ntTSL 3 BASIC1.33□□□□□ -2.2
RFX3P48380 RPS23P5-201ENST00000495419 428 ntBASIC1.33□□□□□ -2.2
RFX3P48380 Y_RNA.654-201ENST00000497848 106 ntBASIC1.33□□□□□ -2.2
RFX3P48380 AC008852.1-201ENST00000510198 451 ntTSL 2 BASIC1.33□□□□□ -2.2
RFX3P48380 SUMO2P18-201ENST00000518873 252 ntBASIC1.33□□□□□ -2.2
RFX3P48380 AP001001.1-201ENST00000532422 826 ntTSL 3 BASIC1.33□□□□□ -2.2
RFX3P48380 AC091047.1-201ENST00000533344 552 ntTSL 4 BASIC1.33□□□□□ -2.2
RFX3P48380 AC138625.1-201ENST00000567556 483 ntTSL 3 BASIC1.33□□□□□ -2.2
RFX3P48380 AC090517.1-201ENST00000569307 266 ntBASIC1.33□□□□□ -2.2
RFX3P48380 MIR3611-201ENST00000584484 83 ntBASIC1.33□□□□□ -2.2
RFX3P48380 AC023043.2-201ENST00000589678 1026 ntBASIC1.33□□□□□ -2.2
RFX3P48380 AC092747.3-201ENST00000603769 301 ntBASIC1.33□□□□□ -2.2
RFX3P48380 AP001485.1-201ENST00000604799 199 ntBASIC1.33□□□□□ -2.2
RFX3P48380 GNAS-AS1_4.1-201ENST00000616546 112 ntBASIC1.33□□□□□ -2.2
RFX3P48380 MESTIT1_1.1-201ENST00000618871 140 ntBASIC1.33□□□□□ -2.2
RFX3P48380 DLX6-AS1_1.1-201ENST00000621599 180 ntBASIC1.33□□□□□ -2.2
RFX3P48380 AL359697.1-201ENST00000624879 587 ntBASIC1.33□□□□□ -2.2
RFX3P48380 PLD1-217ENST00000627725 174 ntTSL 5 BASIC1.33□□□□□ -2.2
RFX3P48380 SEMG1-201ENST00000372781 1662 ntAPPRIS P1 TSL 1 (best) BASIC1.32□□□□□ -2.2
RFX3P48380 HIF1A-212ENST00000557538 3468 ntTSL 1 (best) BASIC1.32□□□□□ -2.2
RFX3P48380 RNU4-66P-201ENST00000365199 138 ntBASIC1.32□□□□□ -2.2
RFX3P48380 SNORA36A-201ENST00000384221 132 ntBASIC1.32□□□□□ -2.2
RFX3P48380 MTCO1P21-201ENST00000416634 589 ntBASIC1.32□□□□□ -2.2
RFX3P48380 AL136985.1-201ENST00000424592 395 ntTSL 3 BASIC1.32□□□□□ -2.2
RFX3P48380 AL445259.1-203ENST00000427828 251 ntTSL 3 BASIC1.32□□□□□ -2.2
RFX3P48380 AF124730.1-201ENST00000430001 327 ntTSL 2 BASIC1.32□□□□□ -2.2
RFX3P48380 HSPE1P24-201ENST00000450782 238 ntBASIC1.32□□□□□ -2.2
RFX3P48380 TPT1P7-201ENST00000458300 517 ntBASIC1.32□□□□□ -2.2
Retrieved 100 of 98,524 protein–RNA pairs in 119.5 ms