Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 AL133396.1-201ENST00000432048 687 ntBASIC0.91□□□□□ -2.26
COL18A1P39060 SNRPEP8-201ENST00000442866 260 ntBASIC0.91□□□□□ -2.26
COL18A1P39060 RPS27AP8-201ENST00000452665 445 ntBASIC0.91□□□□□ -2.26
COL18A1P39060 ART2BP-201ENST00000453501 499 ntBASIC0.91□□□□□ -2.26
COL18A1P39060 RPL26P26-201ENST00000480251 434 ntBASIC0.91□□□□□ -2.26
COL18A1P39060 AC079382.1-201ENST00000493346 557 ntBASIC0.91□□□□□ -2.26
COL18A1P39060 MGC32805-203ENST00000506053 652 ntTSL 3 BASIC0.91□□□□□ -2.26
COL18A1P39060 LINC02064-202ENST00000507876 403 ntTSL 5 BASIC0.91□□□□□ -2.26
COL18A1P39060 AC097467.3-213ENST00000508191 726 ntTSL 3 BASIC0.91□□□□□ -2.26
COL18A1P39060 NAF1-205ENST00000509434 385 ntTSL 3 BASIC0.91□□□□□ -2.26
COL18A1P39060 RNU6-1220P-201ENST00000517126 108 ntBASIC0.91□□□□□ -2.26
COL18A1P39060 MDM2-221ENST00000517852 393 ntTSL 1 (best) BASIC0.91□□□□□ -2.26
COL18A1P39060 AP003097.2-201ENST00000530126 178 ntTSL 3 BASIC0.91□□□□□ -2.26
COL18A1P39060 PWRN1-203ENST00000564898 389 ntTSL 5 BASIC0.91□□□□□ -2.26
COL18A1P39060 AC245884.10-201ENST00000597355 337 ntBASIC0.91□□□□□ -2.26
COL18A1P39060 AC104073.3-201ENST00000610942 955 ntBASIC0.91□□□□□ -2.26
COL18A1P39060 AC122133.1-201ENST00000613964 233 ntBASIC0.91□□□□□ -2.26
COL18A1P39060 RNU6-692P-201ENST00000384496 107 ntBASIC0.91□□□□□ -2.26
COL18A1P39060 RNA5SP201-201ENST00000410316 124 ntBASIC0.91□□□□□ -2.26
COL18A1P39060 AC105271.1-202ENST00000411417 445 ntTSL 3 BASIC0.91□□□□□ -2.26
COL18A1P39060 HIGD1AP15-201ENST00000416198 280 ntBASIC0.91□□□□□ -2.26
COL18A1P39060 MTND2P4-201ENST00000445034 1004 ntBASIC0.91□□□□□ -2.26
COL18A1P39060 LINC01813-201ENST00000451034 712 ntTSL 1 (best) BASIC0.91□□□□□ -2.26
COL18A1P39060 LINC00709-201ENST00000458168 494 ntTSL 2 BASIC0.91□□□□□ -2.26
COL18A1P39060 RNU7-14P-201ENST00000459331 62 ntBASIC0.91□□□□□ -2.26
COL18A1P39060 OR2A41P-201ENST00000473586 105 ntBASIC0.91□□□□□ -2.26
COL18A1P39060 AC099513.1-201ENST00000490423 301 ntBASIC0.91□□□□□ -2.26
COL18A1P39060 AC106892.1-201ENST00000491608 406 ntTSL 3 BASIC0.91□□□□□ -2.26
COL18A1P39060 AC016632.1-201ENST00000503994 196 ntBASIC0.91□□□□□ -2.26
COL18A1P39060 KRTAP13-6P-201ENST00000508999 371 ntBASIC0.91□□□□□ -2.26
COL18A1P39060 AC008700.1-202ENST00000513657 468 ntTSL 5 BASIC0.91□□□□□ -2.26
COL18A1P39060 RNU5F-4P-201ENST00000516581 114 ntBASIC0.91□□□□□ -2.26
COL18A1P39060 AP003171.1-201ENST00000532770 266 ntTSL 2 BASIC0.91□□□□□ -2.26
COL18A1P39060 MDM2-232ENST00000544561 213 ntTSL 5 BASIC0.91□□□□□ -2.26
COL18A1P39060 RAB11AP2-201ENST00000545905 639 ntBASIC0.91□□□□□ -2.26
COL18A1P39060 EIF4A1P12-201ENST00000551910 141 ntBASIC0.91□□□□□ -2.26
COL18A1P39060 AC090616.2-202ENST00000584248 222 ntBASIC0.91□□□□□ -2.26
COL18A1P39060 AC107304.1-201ENST00000604229 296 ntBASIC0.91□□□□□ -2.26
COL18A1P39060 AL022161.1-201ENST00000604390 213 ntBASIC0.91□□□□□ -2.26
COL18A1P39060 AL355802.3-201ENST00000607571 545 ntBASIC0.91□□□□□ -2.26
COL18A1P39060 AL159152.1-201ENST00000635019 2587 ntBASIC0.9□□□□□ -2.27
COL18A1P39060 RNU6-428P-201ENST00000362942 107 ntBASIC0.9□□□□□ -2.27
COL18A1P39060 RNU6-1019P-201ENST00000364424 107 ntBASIC0.9□□□□□ -2.27
COL18A1P39060 SNORA25.8-201ENST00000364831 128 ntBASIC0.9□□□□□ -2.27
COL18A1P39060 SNORD31B-201ENST00000364977 69 ntBASIC0.9□□□□□ -2.27
COL18A1P39060 NPS-201ENST00000398023 270 ntAPPRIS P1 TSL 5 BASIC0.9□□□□□ -2.27
COL18A1P39060 RN7SKP61-201ENST00000410642 295 ntBASIC0.9□□□□□ -2.27
COL18A1P39060 RNA5SP127-201ENST00000411051 133 ntBASIC0.9□□□□□ -2.27
COL18A1P39060 AC011233.1-201ENST00000422812 283 ntBASIC0.9□□□□□ -2.27
COL18A1P39060 AC002486.1-201ENST00000435098 391 ntBASIC0.9□□□□□ -2.27
COL18A1P39060 AC117454.1-201ENST00000491120 168 ntBASIC0.9□□□□□ -2.27
COL18A1P39060 AC103851.1-201ENST00000506833 274 ntBASIC0.9□□□□□ -2.27
COL18A1P39060 RNU6-567P-201ENST00000516746 107 ntBASIC0.9□□□□□ -2.27
COL18A1P39060 RNU11-2P-201ENST00000516898 142 ntBASIC0.9□□□□□ -2.27
COL18A1P39060 CYCSP23-201ENST00000519781 313 ntBASIC0.9□□□□□ -2.27
COL18A1P39060 AC008250.2-201ENST00000615261 205 ntBASIC0.9□□□□□ -2.27
COL18A1P39060 PTPN22-206ENST00000525799 2118 ntTSL 1 (best) BASIC0.9□□□□□ -2.27
COL18A1P39060 AC010615.1-201ENST00000594254 1764 ntBASIC0.89□□□□□ -2.27
COL18A1P39060 RNU6-715P-201ENST00000365204 103 ntBASIC0.89□□□□□ -2.27
COL18A1P39060 RNU6-1029P-201ENST00000384109 107 ntBASIC0.89□□□□□ -2.27
COL18A1P39060 RNU6-74P-201ENST00000384235 107 ntBASIC0.89□□□□□ -2.27
COL18A1P39060 RNU6-296P-201ENST00000384608 107 ntBASIC0.89□□□□□ -2.27
COL18A1P39060 MIR1-2-201ENST00000384961 85 ntBASIC0.89□□□□□ -2.27
COL18A1P39060 AL031577.2-201ENST00000404133 280 ntBASIC0.89□□□□□ -2.27
COL18A1P39060 AC010099.3-201ENST00000423896 409 ntBASIC0.89□□□□□ -2.27
COL18A1P39060 NAALADL2-AS1-201ENST00000426315 804 ntTSL 5 BASIC0.89□□□□□ -2.27
COL18A1P39060 HSPE1P9-201ENST00000440046 311 ntBASIC0.89□□□□□ -2.27
COL18A1P39060 AC069542.1-201ENST00000445235 557 ntTSL 3 BASIC0.89□□□□□ -2.27
COL18A1P39060 GMFBP1-201ENST00000467831 427 ntBASIC0.89□□□□□ -2.27
COL18A1P39060 RPS26P55-201ENST00000471178 356 ntBASIC0.89□□□□□ -2.27
COL18A1P39060 RAP1BP2-201ENST00000478270 544 ntBASIC0.89□□□□□ -2.27
COL18A1P39060 AC008628.2-201ENST00000502605 298 ntBASIC0.89□□□□□ -2.27
COL18A1P39060 AC091917.1-201ENST00000506330 566 ntTSL 4 BASIC0.89□□□□□ -2.27
COL18A1P39060 RRN3P3-201ENST00000549207 578 ntBASIC0.89□□□□□ -2.27
COL18A1P39060 AC009558.1-201ENST00000561174 581 ntTSL 4 BASIC0.89□□□□□ -2.27
COL18A1P39060 CYP4A27P-201ENST00000567218 190 ntBASIC0.89□□□□□ -2.27
COL18A1P39060 AC007631.1-201ENST00000578545 189 ntTSL 3 BASIC0.89□□□□□ -2.27
COL18A1P39060 AC110760.3-201ENST00000598794 467 ntBASIC0.89□□□□□ -2.27
COL18A1P39060 AC011458.1-201ENST00000604034 617 ntBASIC0.89□□□□□ -2.27
COL18A1P39060 Z84480.1-201ENST00000605131 311 ntBASIC0.89□□□□□ -2.27
COL18A1P39060 GLMN-201ENST00000370360 1995 ntAPPRIS P1 TSL 1 (best) BASIC0.89□□□□□ -2.27
COL18A1P39060 RNU6-336P-201ENST00000364891 107 ntBASIC0.88□□□□□ -2.27
COL18A1P39060 RNU6-378P-201ENST00000384324 107 ntBASIC0.88□□□□□ -2.27
COL18A1P39060 RNU6-1106P-201ENST00000390845 107 ntBASIC0.88□□□□□ -2.27
COL18A1P39060 RNU4-46P-201ENST00000410818 138 ntBASIC0.88□□□□□ -2.27
COL18A1P39060 MTND3P17-201ENST00000416968 344 ntBASIC0.88□□□□□ -2.27
COL18A1P39060 ARL5AP1-201ENST00000418991 388 ntBASIC0.88□□□□□ -2.27
COL18A1P39060 AL669831.1-202ENST00000428504 417 ntBASIC0.88□□□□□ -2.27
COL18A1P39060 AC009961.2-201ENST00000435771 251 ntBASIC0.88□□□□□ -2.27
COL18A1P39060 AC092628.1-201ENST00000436250 252 ntBASIC0.88□□□□□ -2.27
COL18A1P39060 GTF2IP13-201ENST00000438487 386 ntBASIC0.88□□□□□ -2.27
COL18A1P39060 AL591504.1-201ENST00000450681 414 ntTSL 3 BASIC0.88□□□□□ -2.27
COL18A1P39060 AC022364.2-201ENST00000457963 554 ntBASIC0.88□□□□□ -2.27
COL18A1P39060 LYRM7-202ENST00000507584 317 ntTSL 2 BASIC0.88□□□□□ -2.27
COL18A1P39060 MTCO3P28-201ENST00000513351 515 ntBASIC0.88□□□□□ -2.27
COL18A1P39060 RNU6-496P-201ENST00000516145 99 ntBASIC0.88□□□□□ -2.27
COL18A1P39060 RNA5SP481-201ENST00000516814 122 ntBASIC0.88□□□□□ -2.27
COL18A1P39060 AC106038.2-201ENST00000520706 568 ntBASIC0.88□□□□□ -2.27
COL18A1P39060 AP006219.1-201ENST00000580258 472 ntTSL 3 BASIC0.88□□□□□ -2.27
COL18A1P39060 RSL24D1P11-201ENST00000591045 491 ntBASIC0.88□□□□□ -2.27
Retrieved 100 of 98,524 protein–RNA pairs in 102.8 ms