Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 MIR6891-201ENST00000618788 93 ntBASIC3.76□□□□□ -1.81
COL8A1P27658 PSMD1-213ENST00000619128 3161 ntAPPRIS ALT1 TSL 5 BASIC3.76□□□□□ -1.81
COL8A1P27658 SYT14-204ENST00000472886 2966 ntAPPRIS P3 TSL 1 (best) BASIC3.76□□□□□ -1.81
COL8A1P27658 PRKAA2-202ENST00000610361 9280 ntAPPRIS ALT1 TSL 5 BASIC3.76□□□□□ -1.81
COL8A1P27658 BTAF1-204ENST00000544642 6938 ntAPPRIS ALT1 TSL 5 BASIC3.76□□□□□ -1.81
COL8A1P27658 FOXP2-220ENST00000634411 4065 ntTSL 5 BASIC3.76□□□□□ -1.81
COL8A1P27658 FLG-AS1-205ENST00000445097 2857 ntTSL 1 (best) BASIC3.76□□□□□ -1.81
COL8A1P27658 ZNF705A-204ENST00000610508 3378 ntAPPRIS P1 TSL 5 BASIC3.76□□□□□ -1.81
COL8A1P27658 RIMS1-204ENST00000401910 3542 ntTSL 2 BASIC3.75□□□□□ -1.81
COL8A1P27658 GTDC1-206ENST00000409214 2954 ntAPPRIS P1 TSL 1 (best) BASIC3.75□□□□□ -1.81
COL8A1P27658 OR4M1-202ENST00000641200 3493 ntAPPRIS P1 BASIC3.75□□□□□ -1.81
COL8A1P27658 ELAVL4-206ENST00000371827 3775 ntAPPRIS ALT1 TSL 1 (best) BASIC3.75□□□□□ -1.81
COL8A1P27658 SEC31A-237ENST00000513858 3687 ntTSL 1 (best) BASIC3.75□□□□□ -1.81
COL8A1P27658 ASPN-202ENST00000375544 2470 ntAPPRIS P1 TSL 1 (best) BASIC3.75□□□□□ -1.81
COL8A1P27658 C12orf4-201ENST00000261250 3826 ntAPPRIS P1 TSL 1 (best) BASIC3.75□□□□□ -1.81
COL8A1P27658 RNU1-14P-201ENST00000362759 152 ntBASIC3.75□□□□□ -1.81
COL8A1P27658 RNA5SP22-201ENST00000365393 109 ntBASIC3.75□□□□□ -1.81
COL8A1P27658 MIR708-201ENST00000390708 88 ntBASIC3.75□□□□□ -1.81
COL8A1P27658 AC244098.2-201ENST00000422068 99 ntBASIC3.75□□□□□ -1.81
COL8A1P27658 AL121890.1-201ENST00000435457 205 ntBASIC3.75□□□□□ -1.81
COL8A1P27658 AC099522.1-202ENST00000514718 367 ntBASIC3.75□□□□□ -1.81
COL8A1P27658 RNU6-581P-201ENST00000516214 105 ntBASIC3.75□□□□□ -1.81
COL8A1P27658 SNORA31.8-201ENST00000516327 108 ntBASIC3.75□□□□□ -1.81
COL8A1P27658 RNU4ATAC17P-201ENST00000517272 120 ntBASIC3.75□□□□□ -1.81
COL8A1P27658 AC084364.2-201ENST00000546924 395 ntBASIC3.75□□□□□ -1.81
COL8A1P27658 AC019288.1-201ENST00000557918 224 ntBASIC3.75□□□□□ -1.81
COL8A1P27658 BCLAF1-214ENST00000531224 7263 ntAPPRIS P3 TSL 1 (best) BASIC3.75□□□□□ -1.81
COL8A1P27658 SLC17A3-204ENST00000397060 2052 ntAPPRIS P1 TSL 2 BASIC3.75□□□□□ -1.81
COL8A1P27658 ERICH3-AS1-202ENST00000612390 4874 ntTSL 1 (best) BASIC3.75□□□□□ -1.81
COL8A1P27658 DTWD2-201ENST00000304058 4365 ntTSL 1 (best) BASIC3.75□□□□□ -1.81
COL8A1P27658 CNTN1-201ENST00000347616 5507 ntAPPRIS P1 TSL 1 (best) BASIC3.75□□□□□ -1.81
COL8A1P27658 FMO2-201ENST00000209929 3851 ntAPPRIS P1 TSL 1 (best) BASIC3.75□□□□□ -1.81
COL8A1P27658 AP5M1-201ENST00000261558 11737 ntAPPRIS P1 TSL 1 (best) BASIC3.75□□□□□ -1.81
COL8A1P27658 EIF2S1-202ENST00000466499 2390 ntAPPRIS P1 TSL 1 (best) BASIC3.75□□□□□ -1.81
COL8A1P27658 RAB23-201ENST00000317483 2546 ntAPPRIS P1 TSL 1 (best) BASIC3.75□□□□□ -1.81
COL8A1P27658 FAM133A-202ENST00000332647 3159 ntAPPRIS P1 TSL 2 BASIC3.75□□□□□ -1.81
COL8A1P27658 ALG14-201ENST00000370205 9367 ntAPPRIS P1 TSL 1 (best) BASIC3.75□□□□□ -1.81
COL8A1P27658 OR9H1P-201ENST00000446393 4888 ntAPPRIS P1 BASIC3.75□□□□□ -1.81
COL8A1P27658 DMD-230ENST00000620040 13746 ntAPPRIS ALT2 TSL 5 BASIC3.74□□□□□ -1.81
COL8A1P27658 EMSY-215ENST00000533248 3798 ntTSL 1 (best) BASIC3.74□□□□□ -1.81
COL8A1P27658 AC080128.1-201ENST00000474389 1917 ntBASIC3.74□□□□□ -1.81
COL8A1P27658 AC006971.1-201ENST00000407916 4486 ntBASIC3.74□□□□□ -1.81
COL8A1P27658 SLC30A6-205ENST00000435660 4776 ntTSL 1 (best) BASIC3.74□□□□□ -1.81
COL8A1P27658 PIKFYVE-201ENST00000264380 9901 ntAPPRIS P1 TSL 1 (best) BASIC3.74□□□□□ -1.81
COL8A1P27658 DGKI-204ENST00000453654 12928 ntAPPRIS ALT2 TSL 1 (best) BASIC3.74□□□□□ -1.81
COL8A1P27658 MYOT-201ENST00000239926 2337 ntAPPRIS P1 TSL 1 (best) BASIC3.74□□□□□ -1.81
COL8A1P27658 ANK3-202ENST00000355288 3811 ntTSL 1 (best) BASIC3.74□□□□□ -1.81
COL8A1P27658 RNU6-271P-201ENST00000363858 105 ntBASIC3.74□□□□□ -1.81
COL8A1P27658 MS4A1-202ENST00000389939 3372 ntAPPRIS P1 TSL 1 (best) BASIC3.74□□□□□ -1.81
COL8A1P27658 AL355796.1-201ENST00000406706 323 ntBASIC3.74□□□□□ -1.81
COL8A1P27658 AL157831.1-201ENST00000426134 473 ntBASIC3.74□□□□□ -1.81
COL8A1P27658 RPS26P55-201ENST00000471178 356 ntBASIC3.74□□□□□ -1.81
COL8A1P27658 ATP6V1G1P6-201ENST00000504007 334 ntBASIC3.74□□□□□ -1.81
COL8A1P27658 AC091826.1-201ENST00000514065 313 ntBASIC3.74□□□□□ -1.81
COL8A1P27658 AC087190.4-201ENST00000574616 8334 ntBASIC3.74□□□□□ -1.81
COL8A1P27658 MIR4662B-201ENST00000579498 81 ntBASIC3.74□□□□□ -1.81
COL8A1P27658 MIR2681-201ENST00000581814 105 ntBASIC3.74□□□□□ -1.81
COL8A1P27658 EEF1A1-211ENST00000615060 3508 ntTSL 5 BASIC3.74□□□□□ -1.81
COL8A1P27658 SGIP1-204ENST00000371039 4080 ntAPPRIS ALT2 TSL 1 (best) BASIC3.74□□□□□ -1.81
COL8A1P27658 MARCH1-201ENST00000274056 5367 ntAPPRIS P1 TSL 4 BASIC3.74□□□□□ -1.81
COL8A1P27658 PARP8-201ENST00000281631 7177 ntAPPRIS P1 TSL 1 (best) BASIC3.74□□□□□ -1.81
COL8A1P27658 PPP1R9A-205ENST00000424654 4058 ntTSL 5 BASIC3.74□□□□□ -1.81
COL8A1P27658 EMSY-207ENST00000525919 4074 ntAPPRIS ALT1 TSL 1 (best) BASIC3.74□□□□□ -1.81
COL8A1P27658 RANBP6-201ENST00000259569 4576 ntAPPRIS P1 BASIC3.73□□□□□ -1.81
COL8A1P27658 F8-202ENST00000360256 9059 ntAPPRIS P1 TSL 1 (best) BASIC3.73□□□□□ -1.81
COL8A1P27658 PTPN22-201ENST00000359785 3654 ntAPPRIS P2 TSL 1 (best) BASIC3.73□□□□□ -1.81
COL8A1P27658 AC019117.3-201ENST00000637807 3523 ntAPPRIS P1 TSL 5 BASIC3.73□□□□□ -1.81
COL8A1P27658 PCDH11X-204ENST00000373088 4069 ntAPPRIS ALT2 TSL 1 (best) BASIC3.73□□□□□ -1.81
COL8A1P27658 CEP57L1-216ENST00000521522 2259 ntTSL 5 BASIC3.73□□□□□ -1.81
COL8A1P27658 ADGRL2-205ENST00000370717 5873 ntAPPRIS ALT2 TSL 5 BASIC3.73□□□□□ -1.81
COL8A1P27658 SNORA27.1-201ENST00000362604 124 ntBASIC3.73□□□□□ -1.81
COL8A1P27658 RNU6-884P-201ENST00000363889 107 ntBASIC3.73□□□□□ -1.81
COL8A1P27658 Y_RNA.213-201ENST00000364178 111 ntBASIC3.73□□□□□ -1.81
COL8A1P27658 RNU6-497P-201ENST00000365316 104 ntBASIC3.73□□□□□ -1.81
COL8A1P27658 RNU6-787P-201ENST00000384032 107 ntBASIC3.73□□□□□ -1.81
COL8A1P27658 AP003170.3-201ENST00000399123 158 ntTSL 5 BASIC3.73□□□□□ -1.81
COL8A1P27658 MIR1185-2-201ENST00000408687 86 ntBASIC3.73□□□□□ -1.81
COL8A1P27658 AL513185.1-201ENST00000431638 162 ntTSL 5 BASIC3.73□□□□□ -1.81
COL8A1P27658 HMGB1P22-201ENST00000505315 124 ntBASIC3.73□□□□□ -1.81
COL8A1P27658 AC005921.1-201ENST00000510589 286 ntBASIC3.73□□□□□ -1.81
COL8A1P27658 AC011406.1-201ENST00000512440 370 ntBASIC3.73□□□□□ -1.81
COL8A1P27658 RNA5SP497-201ENST00000516081 97 ntBASIC3.73□□□□□ -1.81
COL8A1P27658 AC104393.1-201ENST00000517495 255 ntTSL 3 BASIC3.73□□□□□ -1.81
COL8A1P27658 GNG2-205ENST00000554736 569 ntAPPRIS P1 TSL 4 BASIC3.73□□□□□ -1.81
COL8A1P27658 AC005000.2-201ENST00000605468 310 ntBASIC3.73□□□□□ -1.81
COL8A1P27658 AC107294.3-201ENST00000609211 526 ntBASIC3.73□□□□□ -1.81
COL8A1P27658 AC006065.5-201ENST00000623427 349 ntBASIC3.73□□□□□ -1.81
COL8A1P27658 PPP1R9A-202ENST00000340694 9689 ntAPPRIS P1 TSL 5 BASIC3.73□□□□□ -1.81
COL8A1P27658 ZNF280D-201ENST00000267807 4328 ntAPPRIS P3 TSL 1 (best) BASIC3.73□□□□□ -1.81
COL8A1P27658 C2CD6-204ENST00000450242 2571 ntAPPRIS ALT2 TSL 1 (best) BASIC3.73□□□□□ -1.81
COL8A1P27658 SHOC2-201ENST00000265277 3691 ntTSL 2 BASIC3.73□□□□□ -1.81
COL8A1P27658 STON1-GTF2A1L-203ENST00000402114 3790 ntTSL 2 BASIC3.73□□□□□ -1.81
COL8A1P27658 CACNB4-257ENST00000637547 7658 ntTSL 5 BASIC3.72□□□□□ -1.81
COL8A1P27658 AL672167.1-203ENST00000641299 2975 ntBASIC3.72□□□□□ -1.81
COL8A1P27658 AL365440.2-201ENST00000419738 2597 ntTSL 2 BASIC3.72□□□□□ -1.81
COL8A1P27658 AL139811.1-201ENST00000424779 2299 ntBASIC3.72□□□□□ -1.81
COL8A1P27658 ZNF808-201ENST00000359798 3600 ntAPPRIS P1 TSL 5 BASIC3.72□□□□□ -1.81
COL8A1P27658 FANCI-202ENST00000310775 4743 ntAPPRIS ALT2 TSL 1 (best) BASIC3.72□□□□□ -1.81
COL8A1P27658 ACEA_U3.1-201ENST00000363057 217 ntBASIC3.72□□□□□ -1.81
COL8A1P27658 RNU6-1125P-201ENST00000363601 107 ntBASIC3.72□□□□□ -1.81
Retrieved 100 of 98,524 protein–RNA pairs in 111.2 ms