Protein–RNA interactions for Protein: P12109

COL6A1, Collagen alpha-1(VI) chain, humanhuman

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1P12109 AC245291.1-201ENST00000419501 328 ntBASIC3.49□□□□□ -1.85
COL6A1P12109 AL031659.1-201ENST00000447075 539 ntBASIC3.49□□□□□ -1.85
COL6A1P12109 AL136164.1-201ENST00000456795 352 ntTSL 3 BASIC3.49□□□□□ -1.85
COL6A1P12109 AP000870.1-201ENST00000472927 406 ntBASIC3.49□□□□□ -1.85
COL6A1P12109 AC021205.2-201ENST00000480069 347 ntBASIC3.49□□□□□ -1.85
COL6A1P12109 LINC02233-201ENST00000513718 358 ntTSL 3 BASIC3.49□□□□□ -1.85
COL6A1P12109 IGHVII-62-1-201ENST00000519283 235 ntBASIC3.49□□□□□ -1.85
COL6A1P12109 AC012413.1-201ENST00000521294 519 ntTSL 2 BASIC3.49□□□□□ -1.85
COL6A1P12109 MDM2-232ENST00000544561 213 ntTSL 5 BASIC3.49□□□□□ -1.85
COL6A1P12109 AC009120.5-201ENST00000561669 475 ntTSL 5 BASIC3.49□□□□□ -1.85
COL6A1P12109 AC024270.4-201ENST00000570202 421 ntTSL 3 BASIC3.49□□□□□ -1.85
COL6A1P12109 AC131274.4-201ENST00000577879 398 ntTSL 3 BASIC3.49□□□□□ -1.85
COL6A1P12109 AC103810.1-201ENST00000579873 453 ntBASIC3.49□□□□□ -1.85
COL6A1P12109 LINC01900-203ENST00000585185 393 ntTSL 3 BASIC3.49□□□□□ -1.85
COL6A1P12109 AC019159.1-201ENST00000605094 187 ntBASIC3.49□□□□□ -1.85
COL6A1P12109 SNORD113-5-201ENST00000607261 78 ntBASIC3.49□□□□□ -1.85
COL6A1P12109 LINC01206-214ENST00000610910 456 ntTSL 5 BASIC3.49□□□□□ -1.85
COL6A1P12109 MDM2-206ENST00000350057 1401 ntTSL 1 (best) BASIC3.49□□□□□ -1.85
COL6A1P12109 POSTN-209ENST00000541179 3214 ntAPPRIS ALT2 TSL 1 (best) BASIC3.49□□□□□ -1.85
COL6A1P12109 UBE2W-203ENST00000517608 8426 ntTSL 1 (best) BASIC3.49□□□□□ -1.85
COL6A1P12109 ZMYM1-210ENST00000611874 4466 ntAPPRIS P1 TSL 2 BASIC3.48□□□□□ -1.85
COL6A1P12109 NEB-201ENST00000172853 20634 ntAPPRIS ALT2 TSL 1 (best) BASIC3.48□□□□□ -1.85
COL6A1P12109 CCDC178-213ENST00000583930 3094 ntAPPRIS ALT2 TSL 1 (best) BASIC3.48□□□□□ -1.85
COL6A1P12109 PRRG1-202ENST00000449135 4481 ntAPPRIS P1 TSL 1 (best) BASIC3.48□□□□□ -1.85
COL6A1P12109 PARPBP-201ENST00000327680 3014 ntAPPRIS P1 TSL 2 BASIC3.48□□□□□ -1.85
COL6A1P12109 DICER1-203ENST00000526495 10331 ntAPPRIS P1 TSL 5 BASIC3.48□□□□□ -1.85
COL6A1P12109 KIAA1109-203ENST00000388738 15574 ntAPPRIS P1 TSL 1 (best) BASIC3.48□□□□□ -1.85
COL6A1P12109 ERBIN-204ENST00000380943 6410 ntAPPRIS P3 TSL 1 (best) BASIC3.48□□□□□ -1.85
COL6A1P12109 SNORA29-201ENST00000384183 140 ntBASIC3.48□□□□□ -1.85
COL6A1P12109 RNU5A-5P-201ENST00000411054 116 ntBASIC3.48□□□□□ -1.85
COL6A1P12109 AL442638.1-201ENST00000443359 237 ntTSL 5 BASIC3.48□□□□□ -1.85
COL6A1P12109 AC125238.1-201ENST00000448842 249 ntBASIC3.48□□□□□ -1.85
COL6A1P12109 AL109933.2-201ENST00000452651 260 ntBASIC3.48□□□□□ -1.85
COL6A1P12109 RPS29P20-201ENST00000489592 171 ntBASIC3.48□□□□□ -1.85
COL6A1P12109 AF186996.7-201ENST00000492781 209 ntBASIC3.48□□□□□ -1.85
COL6A1P12109 SEPT14P8-201ENST00000508026 178 ntBASIC3.48□□□□□ -1.85
COL6A1P12109 uc_338.25-201ENST00000613756 156 ntBASIC3.48□□□□□ -1.85
COL6A1P12109 MIR6134-201ENST00000617606 109 ntBASIC3.48□□□□□ -1.85
COL6A1P12109 MUC7-202ENST00000413702 2540 ntAPPRIS P2 TSL 4 BASIC3.47□□□□□ -1.85
COL6A1P12109 IQCG-205ENST00000455191 1981 ntAPPRIS P1 TSL 2 BASIC3.47□□□□□ -1.85
COL6A1P12109 SNORD56.1-201ENST00000362913 68 ntBASIC3.47□□□□□ -1.85
COL6A1P12109 RNU1-100P-201ENST00000365255 165 ntBASIC3.47□□□□□ -1.85
COL6A1P12109 RNU6-318P-201ENST00000384283 103 ntBASIC3.47□□□□□ -1.85
COL6A1P12109 RNU6-102P-201ENST00000384485 104 ntBASIC3.47□□□□□ -1.85
COL6A1P12109 SNORD12B-201ENST00000410433 91 ntBASIC3.47□□□□□ -1.85
COL6A1P12109 AL513008.1-201ENST00000412701 161 ntTSL 5 BASIC3.47□□□□□ -1.85
COL6A1P12109 NCKAP5-IT1-201ENST00000416437 554 ntTSL 4 BASIC3.47□□□□□ -1.85
COL6A1P12109 RPL23AP95-201ENST00000426806 265 ntBASIC3.47□□□□□ -1.85
COL6A1P12109 AC005002.2-201ENST00000438228 269 ntBASIC3.47□□□□□ -1.85
COL6A1P12109 IFT74-AS1-201ENST00000456198 405 ntTSL 2 BASIC3.47□□□□□ -1.85
COL6A1P12109 Y_RNA.644-201ENST00000459006 113 ntBASIC3.47□□□□□ -1.85
COL6A1P12109 Y_RNA.674-201ENST00000516362 113 ntBASIC3.47□□□□□ -1.85
COL6A1P12109 CR383656.8-201ENST00000549046 145 ntBASIC3.47□□□□□ -1.85
COL6A1P12109 AC011461.1-201ENST00000592671 357 ntTSL 3 BASIC3.47□□□□□ -1.85
COL6A1P12109 AL138963.2-201ENST00000605137 226 ntBASIC3.47□□□□□ -1.85
COL6A1P12109 ST7-AS1_1.1-201ENST00000611142 116 ntBASIC3.47□□□□□ -1.85
COL6A1P12109 AC005296.1-201ENST00000616145 209 ntBASIC3.47□□□□□ -1.85
COL6A1P12109 LINC01002-202ENST00000631412 459 ntTSL 5 BASIC3.47□□□□□ -1.85
COL6A1P12109 SIRT1-203ENST00000406900 3295 ntTSL 2 BASIC3.46□□□□□ -1.85
COL6A1P12109 ADAM3A-203ENST00000461344 2157 ntBASIC3.46□□□□□ -1.85
COL6A1P12109 PTBP2-211ENST00000609116 12014 ntAPPRIS ALT1 TSL 1 (best) BASIC3.46□□□□□ -1.86
COL6A1P12109 FAM46D-201ENST00000308293 3011 ntAPPRIS P1 TSL 1 (best) BASIC3.46□□□□□ -1.86
COL6A1P12109 HELZ-201ENST00000358691 13810 ntTSL 1 (best) BASIC3.46□□□□□ -1.86
COL6A1P12109 RNU6-858P-201ENST00000362436 107 ntBASIC3.46□□□□□ -1.86
COL6A1P12109 Y_RNA.44-201ENST00000362676 108 ntBASIC3.46□□□□□ -1.86
COL6A1P12109 RNU6-137P-201ENST00000363680 108 ntBASIC3.46□□□□□ -1.86
COL6A1P12109 Y_RNA.199-201ENST00000364014 102 ntBASIC3.46□□□□□ -1.86
COL6A1P12109 SNORD32A-201ENST00000364805 84 ntBASIC3.46□□□□□ -1.86
COL6A1P12109 Y_RNA.319-201ENST00000365138 92 ntBASIC3.46□□□□□ -1.86
COL6A1P12109 RNU6-886P-201ENST00000384319 105 ntBASIC3.46□□□□□ -1.86
COL6A1P12109 RNU6-378P-201ENST00000384324 107 ntBASIC3.46□□□□□ -1.86
COL6A1P12109 RNU6-21P-201ENST00000384710 107 ntBASIC3.46□□□□□ -1.86
COL6A1P12109 SNORD15B-201ENST00000384714 146 ntBASIC3.46□□□□□ -1.86
COL6A1P12109 FO393413.1-201ENST00000402892 195 ntBASIC3.46□□□□□ -1.86
COL6A1P12109 RNU2-49P-201ENST00000410666 184 ntBASIC3.46□□□□□ -1.86
COL6A1P12109 AC023141.4-201ENST00000412031 328 ntBASIC3.46□□□□□ -1.86
COL6A1P12109 AC074117.2-201ENST00000417130 397 ntBASIC3.46□□□□□ -1.86
COL6A1P12109 AL136320.1-201ENST00000417273 430 ntTSL 3 BASIC3.46□□□□□ -1.86
COL6A1P12109 AC096638.1-201ENST00000444678 216 ntBASIC3.46□□□□□ -1.86
COL6A1P12109 AC012308.1-201ENST00000451232 178 ntBASIC3.46□□□□□ -1.86
COL6A1P12109 HSPE1P25-201ENST00000455484 251 ntBASIC3.46□□□□□ -1.86
COL6A1P12109 AC091874.1-201ENST00000511402 339 ntBASIC3.46□□□□□ -1.86
COL6A1P12109 RNU6-406P-201ENST00000516470 107 ntBASIC3.46□□□□□ -1.86
COL6A1P12109 RN7SKP49-201ENST00000516675 260 ntBASIC3.46□□□□□ -1.86
COL6A1P12109 RNU6-1198P-201ENST00000516904 67 ntBASIC3.46□□□□□ -1.86
COL6A1P12109 AC091544.4-201ENST00000555268 342 ntBASIC3.46□□□□□ -1.86
COL6A1P12109 MIR4435-1-201ENST00000582552 80 ntBASIC3.46□□□□□ -1.86
COL6A1P12109 HS1BP3-208ENST00000631166 78 ntTSL 5 BASIC3.46□□□□□ -1.86
COL6A1P12109 WDR72-201ENST00000360509 5887 ntAPPRIS P2 TSL 1 (best) BASIC3.46□□□□□ -1.86
COL6A1P12109 THOC2-201ENST00000245838 5609 ntAPPRIS P1 TSL 5 BASIC3.46□□□□□ -1.86
COL6A1P12109 ZNF680-202ENST00000447137 2159 ntTSL 2 BASIC3.46□□□□□ -1.86
COL6A1P12109 C5orf51-201ENST00000381647 5241 ntAPPRIS P1 TSL 1 (best) BASIC3.46□□□□□ -1.86
COL6A1P12109 ADGRG7-202ENST00000475887 2035 ntTSL 2 BASIC3.46□□□□□ -1.86
COL6A1P12109 MGAT4C-211ENST00000621808 2582 ntAPPRIS P1 TSL 1 (best) BASIC3.46□□□□□ -1.86
COL6A1P12109 OR8K3-203ENST00000641662 2438 ntAPPRIS P1 BASIC3.45□□□□□ -1.86
COL6A1P12109 PWAR6-201ENST00000552334 4618 ntBASIC3.45□□□□□ -1.86
COL6A1P12109 CLLU1-201ENST00000378485 3897 ntAPPRIS P1 TSL 1 (best) BASIC3.45□□□□□ -1.86
COL6A1P12109 IL1RL1-204ENST00000409584 2693 ntTSL 5 BASIC3.45□□□□□ -1.86
COL6A1P12109 RNU6-326P-201ENST00000365480 107 ntBASIC3.45□□□□□ -1.86
COL6A1P12109 Y_RNA.504-201ENST00000384481 104 ntBASIC3.45□□□□□ -1.86
Retrieved 100 of 98,524 protein–RNA pairs in 123.8 ms