Protein–RNA interactions for Protein: O75351

VPS4B, Vacuolar protein sorting-associated protein 4B, humanhuman

Predictions only

Length 444 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4BO75351 AC010731.3-201ENST00000415029 566 ntTSL 4 BASIC2.93□□□□□ -1.94
VPS4BO75351 AC026355.1-201ENST00000423466 587 ntTSL 5 BASIC2.93□□□□□ -1.94
VPS4BO75351 AL731563.1-201ENST00000442202 214 ntBASIC2.93□□□□□ -1.94
VPS4BO75351 snoU13.6-201ENST00000458785 104 ntBASIC2.93□□□□□ -1.94
VPS4BO75351 RPL23AP70-201ENST00000483361 460 ntBASIC2.93□□□□□ -1.94
VPS4BO75351 RPL36AP48-201ENST00000485521 314 ntBASIC2.93□□□□□ -1.94
VPS4BO75351 AC113383.1-204ENST00000507060 552 ntTSL 3 BASIC2.93□□□□□ -1.94
VPS4BO75351 RNA5SP54-201ENST00000516951 92 ntBASIC2.93□□□□□ -1.94
VPS4BO75351 RN7SKP272-201ENST00000516988 232 ntBASIC2.93□□□□□ -1.94
VPS4BO75351 AP003123.1-201ENST00000526041 333 ntTSL 2 BASIC2.93□□□□□ -1.94
VPS4BO75351 HSPE1P20-201ENST00000538133 289 ntBASIC2.93□□□□□ -1.94
VPS4BO75351 AC073410.2-201ENST00000603240 332 ntBASIC2.93□□□□□ -1.94
VPS4BO75351 AL033523.1-201ENST00000605153 153 ntBASIC2.93□□□□□ -1.94
VPS4BO75351 U6.92-201ENST00000636464 89 ntBASIC2.93□□□□□ -1.94
VPS4BO75351 BAZ2B-202ENST00000343439 2364 ntTSL 5 BASIC2.93□□□□□ -1.94
VPS4BO75351 MLF1-203ENST00000392822 2157 ntTSL 5 BASIC2.93□□□□□ -1.94
VPS4BO75351 ATF2-204ENST00000409437 3697 ntTSL 5 BASIC2.92□□□□□ -1.94
VPS4BO75351 DCLRE1A-202ENST00000369305 4241 ntAPPRIS P1 TSL 5 BASIC2.92□□□□□ -1.94
VPS4BO75351 ANKAR-201ENST00000313581 4391 ntAPPRIS P1 TSL 1 (best) BASIC2.92□□□□□ -1.94
VPS4BO75351 AL359854.1-201ENST00000614203 1594 ntBASIC2.92□□□□□ -1.94
VPS4BO75351 AC099654.7-201ENST00000635788 2127 ntBASIC2.92□□□□□ -1.94
VPS4BO75351 NOX4-202ENST00000343727 3347 ntTSL 2 BASIC2.92□□□□□ -1.94
VPS4BO75351 WDR3-201ENST00000349139 9974 ntAPPRIS P1 TSL 1 (best) BASIC2.92□□□□□ -1.94
VPS4BO75351 RNU6-212P-201ENST00000362642 104 ntBASIC2.92□□□□□ -1.94
VPS4BO75351 RNU6-1210P-201ENST00000363775 107 ntBASIC2.92□□□□□ -1.94
VPS4BO75351 Y_RNA.183-201ENST00000363882 113 ntBASIC2.92□□□□□ -1.94
VPS4BO75351 Y_RNA.471-201ENST00000384312 102 ntBASIC2.92□□□□□ -1.94
VPS4BO75351 Y_RNA.556-201ENST00000384677 113 ntBASIC2.92□□□□□ -1.94
VPS4BO75351 CBX3P9-201ENST00000402326 552 ntBASIC2.92□□□□□ -1.94
VPS4BO75351 MIR1302-3-201ENST00000408128 138 ntBASIC2.92□□□□□ -1.94
VPS4BO75351 RN7SKP123-201ENST00000410732 291 ntBASIC2.92□□□□□ -1.94
VPS4BO75351 AC097463.2-201ENST00000421074 142 ntBASIC2.92□□□□□ -1.94
VPS4BO75351 LINC00459-201ENST00000431656 376 ntTSL 2 BASIC2.92□□□□□ -1.94
VPS4BO75351 LINC02336-201ENST00000434117 330 ntTSL 3 BASIC2.92□□□□□ -1.94
VPS4BO75351 KRTAP19-11P-201ENST00000439851 104 ntBASIC2.92□□□□□ -1.94
VPS4BO75351 MIR4435-2HG-213ENST00000451884 423 ntTSL 3 BASIC2.92□□□□□ -1.94
VPS4BO75351 LINC02540-201ENST00000455554 570 ntTSL 3 BASIC2.92□□□□□ -1.94
VPS4BO75351 RPS29P12-201ENST00000460178 152 ntBASIC2.92□□□□□ -1.94
VPS4BO75351 AC112771.1-201ENST00000463581 102 ntBASIC2.92□□□□□ -1.94
VPS4BO75351 AC008885.1-201ENST00000514930 301 ntBASIC2.92□□□□□ -1.94
VPS4BO75351 RNA5SP356-201ENST00000515972 94 ntBASIC2.92□□□□□ -1.94
VPS4BO75351 RNU6-56P-201ENST00000516986 93 ntBASIC2.92□□□□□ -1.94
VPS4BO75351 RNU6-897P-201ENST00000517135 105 ntBASIC2.92□□□□□ -1.94
VPS4BO75351 AC100807.1-201ENST00000517640 552 ntTSL 5 BASIC2.92□□□□□ -1.94
VPS4BO75351 IGHVII-62-1-201ENST00000519283 235 ntBASIC2.92□□□□□ -1.94
VPS4BO75351 AL161670.1-201ENST00000554348 137 ntBASIC2.92□□□□□ -1.94
VPS4BO75351 MIR3162-201ENST00000581818 82 ntBASIC2.92□□□□□ -1.94
VPS4BO75351 MSMB-202ENST00000582163 488 ntAPPRIS P1 TSL 1 (best) BASIC2.92□□□□□ -1.94
VPS4BO75351 AC125232.2-201ENST00000592457 143 ntBASIC2.92□□□□□ -1.94
VPS4BO75351 AC092070.3-201ENST00000596041 337 ntTSL 3 BASIC2.92□□□□□ -1.94
VPS4BO75351 AL356575.1-201ENST00000603008 283 ntBASIC2.92□□□□□ -1.94
VPS4BO75351 LINC01206-214ENST00000610910 456 ntTSL 5 BASIC2.92□□□□□ -1.94
VPS4BO75351 NPPA-AS1_3.1-201ENST00000617059 108 ntBASIC2.92□□□□□ -1.94
VPS4BO75351 UCA1.1-201ENST00000620952 75 ntBASIC2.92□□□□□ -1.94
VPS4BO75351 IGHVIII-44-202ENST00000636235 289 ntBASIC2.92□□□□□ -1.94
VPS4BO75351 PHTF2-202ENST00000275575 4541 ntTSL 1 (best) BASIC2.92□□□□□ -1.94
VPS4BO75351 PIK3CA-201ENST00000263967 9093 ntAPPRIS P1 TSL 2 BASIC2.91□□□□□ -1.94
VPS4BO75351 MIR133A1HG-202ENST00000581072 4226 ntTSL 1 (best) BASIC2.91□□□□□ -1.94
VPS4BO75351 PRKG1-205ENST00000401604 5922 ntTSL 5 BASIC2.91□□□□□ -1.94
VPS4BO75351 BX322639.1-202ENST00000423987 2213 ntBASIC2.91□□□□□ -1.94
VPS4BO75351 RNU4-15P-201ENST00000362613 141 ntBASIC2.91□□□□□ -1.94
VPS4BO75351 RNU6-1083P-201ENST00000384022 107 ntBASIC2.91□□□□□ -1.94
VPS4BO75351 RNA5SP344-201ENST00000411081 104 ntBASIC2.91□□□□□ -1.94
VPS4BO75351 MCF2-204ENST00000414978 3813 ntAPPRIS ALT2 TSL 5 BASIC2.91□□□□□ -1.94
VPS4BO75351 AL451074.5-201ENST00000415894 435 ntBASIC2.91□□□□□ -1.94
VPS4BO75351 MICF-203ENST00000432679 129 ntBASIC2.91□□□□□ -1.94
VPS4BO75351 AL132875.2-201ENST00000436418 325 ntTSL 5 BASIC2.91□□□□□ -1.94
VPS4BO75351 LINC01594-201ENST00000445083 611 ntTSL 5 BASIC2.91□□□□□ -1.94
VPS4BO75351 RPS3P1-201ENST00000456781 192 ntBASIC2.91□□□□□ -1.94
VPS4BO75351 RPL31P41-201ENST00000477967 372 ntBASIC2.91□□□□□ -1.94
VPS4BO75351 AC025465.3-201ENST00000510570 311 ntBASIC2.91□□□□□ -1.94
VPS4BO75351 RNU6-1143P-201ENST00000516125 104 ntBASIC2.91□□□□□ -1.94
VPS4BO75351 SCARNA17.1-201ENST00000516211 143 ntBASIC2.91□□□□□ -1.94
VPS4BO75351 SCARNA17.2-201ENST00000516334 143 ntBASIC2.91□□□□□ -1.94
VPS4BO75351 RN7SKP49-201ENST00000516675 260 ntBASIC2.91□□□□□ -1.94
VPS4BO75351 AC022868.1-201ENST00000517767 391 ntBASIC2.91□□□□□ -1.94
VPS4BO75351 MIR3923-201ENST00000579521 83 ntBASIC2.91□□□□□ -1.94
VPS4BO75351 ELOCP29-201ENST00000588193 334 ntBASIC2.91□□□□□ -1.94
VPS4BO75351 SCARNA17.4-201ENST00000614296 143 ntBASIC2.91□□□□□ -1.94
VPS4BO75351 MIR8062-201ENST00000621515 85 ntBASIC2.91□□□□□ -1.94
VPS4BO75351 ZNF280C-201ENST00000370978 4634 ntAPPRIS P1 TSL 1 (best) BASIC2.91□□□□□ -1.94
VPS4BO75351 CACNB4-238ENST00000636901 7706 ntTSL 5 BASIC2.91□□□□□ -1.94
VPS4BO75351 AL136360.1-201ENST00000503377 1900 ntBASIC2.91□□□□□ -1.94
VPS4BO75351 CCDC178-213ENST00000583930 3094 ntAPPRIS ALT2 TSL 1 (best) BASIC2.91□□□□□ -1.94
VPS4BO75351 COPS2-203ENST00000542928 1580 ntTSL 2 BASIC2.91□□□□□ -1.94
VPS4BO75351 PLS1-201ENST00000337777 3755 ntAPPRIS P1 TSL 1 (best) BASIC2.9□□□□□ -1.94
VPS4BO75351 TFEC-202ENST00000320239 6605 ntAPPRIS P1 TSL 1 (best) BASIC2.9□□□□□ -1.95
VPS4BO75351 AC073325.2-201ENST00000339545 159 ntBASIC2.9□□□□□ -1.95
VPS4BO75351 RNU6-655P-201ENST00000362858 107 ntBASIC2.9□□□□□ -1.95
VPS4BO75351 RNU6-770P-201ENST00000363929 105 ntBASIC2.9□□□□□ -1.95
VPS4BO75351 RNU4-56P-201ENST00000364700 142 ntBASIC2.9□□□□□ -1.95
VPS4BO75351 U8.9-201ENST00000365667 134 ntBASIC2.9□□□□□ -1.95
VPS4BO75351 RNU6-541P-201ENST00000384709 110 ntBASIC2.9□□□□□ -1.95
VPS4BO75351 MRPL35P1-201ENST00000404272 572 ntBASIC2.9□□□□□ -1.95
VPS4BO75351 SNORD88.1-201ENST00000408684 91 ntBASIC2.9□□□□□ -1.95
VPS4BO75351 EIF4EP4-201ENST00000424916 578 ntBASIC2.9□□□□□ -1.95
VPS4BO75351 WARS2P1-201ENST00000429678 537 ntBASIC2.9□□□□□ -1.95
VPS4BO75351 DYNLT3P2-201ENST00000442517 295 ntBASIC2.9□□□□□ -1.95
VPS4BO75351 AL590422.1-201ENST00000451829 364 ntTSL 3 BASIC2.9□□□□□ -1.95
VPS4BO75351 AC004052.1-202ENST00000505680 516 ntTSL 3 BASIC2.9□□□□□ -1.95
Retrieved 100 of 98,524 protein–RNA pairs in 167.8 ms