Protein–RNA interactions for Protein: O75056

SDC3, Syndecan-3, humanhuman

Predictions only

Length 442 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3O75056 AC005482.1-201ENST00000420758 575 ntTSL 4 BASIC1.76□□□□□ -2.13
SDC3O75056 AC133865.1-201ENST00000438619 339 ntTSL 3 BASIC1.76□□□□□ -2.13
SDC3O75056 AL353148.1-201ENST00000449761 463 ntTSL 2 BASIC1.76□□□□□ -2.13
SDC3O75056 AMD1P1-201ENST00000457220 922 ntBASIC1.76□□□□□ -2.13
SDC3O75056 HMGB3P17-201ENST00000504195 649 ntBASIC1.76□□□□□ -2.13
SDC3O75056 AC091435.1-201ENST00000505442 584 ntBASIC1.76□□□□□ -2.13
SDC3O75056 AC110799.1-201ENST00000509098 449 ntTSL 3 BASIC1.76□□□□□ -2.13
SDC3O75056 RNU6-1332P-201ENST00000516666 104 ntBASIC1.76□□□□□ -2.13
SDC3O75056 RNU6-250P-201ENST00000516958 103 ntBASIC1.76□□□□□ -2.13
SDC3O75056 AP005639.2-201ENST00000527592 928 ntBASIC1.76□□□□□ -2.13
SDC3O75056 EIF4A1P12-201ENST00000551910 141 ntBASIC1.76□□□□□ -2.13
SDC3O75056 AC008083.3-202ENST00000552063 277 ntTSL 3 BASIC1.76□□□□□ -2.13
SDC3O75056 LINC02301-203ENST00000555798 789 ntTSL 3 BASIC1.76□□□□□ -2.13
SDC3O75056 AC007347.1-201ENST00000563879 281 ntTSL 3 BASIC1.76□□□□□ -2.13
SDC3O75056 MIR4498-201ENST00000577599 66 ntBASIC1.76□□□□□ -2.13
SDC3O75056 RPL17P51-201ENST00000605218 238 ntBASIC1.76□□□□□ -2.13
SDC3O75056 AC012557.2-201ENST00000605919 418 ntBASIC1.76□□□□□ -2.13
SDC3O75056 AC009541.1-201ENST00000438279 2662 ntBASIC1.76□□□□□ -2.13
SDC3O75056 SEMG1-201ENST00000372781 1662 ntAPPRIS P1 TSL 1 (best) BASIC1.76□□□□□ -2.13
SDC3O75056 DYNC2H1-203ENST00000398093 12945 ntAPPRIS P3 TSL 5 BASIC1.75□□□□□ -2.13
SDC3O75056 CYLC1-201ENST00000329312 2106 ntAPPRIS P3 TSL 1 (best) BASIC1.75□□□□□ -2.13
SDC3O75056 CYLC2-202ENST00000487798 2053 ntAPPRIS P1 TSL 5 BASIC1.75□□□□□ -2.13
SDC3O75056 SNORD113-7-201ENST00000363762 77 ntBASIC1.75□□□□□ -2.13
SDC3O75056 Y_RNA.450-201ENST00000384198 113 ntBASIC1.75□□□□□ -2.13
SDC3O75056 SNORA36A-201ENST00000384221 132 ntBASIC1.75□□□□□ -2.13
SDC3O75056 Y_RNA.516-201ENST00000384541 124 ntBASIC1.75□□□□□ -2.13
SDC3O75056 Y_RNA.530-201ENST00000384587 101 ntBASIC1.75□□□□□ -2.13
SDC3O75056 AL357139.1-201ENST00000407792 426 ntBASIC1.75□□□□□ -2.13
SDC3O75056 RNU6-373P-201ENST00000411247 98 ntBASIC1.75□□□□□ -2.13
SDC3O75056 AC012306.1-201ENST00000423267 114 ntBASIC1.75□□□□□ -2.13
SDC3O75056 LINC01509-202ENST00000423523 408 ntTSL 3 BASIC1.75□□□□□ -2.13
SDC3O75056 AL645568.3-201ENST00000433683 316 ntBASIC1.75□□□□□ -2.13
SDC3O75056 MTND1P34-201ENST00000438556 671 ntBASIC1.75□□□□□ -2.13
SDC3O75056 AL034345.2-203ENST00000453417 383 ntTSL 3 BASIC1.75□□□□□ -2.13
SDC3O75056 MTCO1P29-201ENST00000496868 288 ntBASIC1.75□□□□□ -2.13
SDC3O75056 MIR449C-201ENST00000516047 92 ntBASIC1.75□□□□□ -2.13
SDC3O75056 ZNF436-AS1-205ENST00000518600 376 ntTSL 5 BASIC1.75□□□□□ -2.13
SDC3O75056 AC026371.1-201ENST00000551867 419 ntBASIC1.75□□□□□ -2.13
SDC3O75056 PWRN1-203ENST00000564898 389 ntTSL 5 BASIC1.75□□□□□ -2.13
SDC3O75056 MIR3683-201ENST00000580847 82 ntBASIC1.75□□□□□ -2.13
SDC3O75056 AC009994.1-201ENST00000606889 253 ntBASIC1.75□□□□□ -2.13
SDC3O75056 PTP4A2-220ENST00000627328 615 ntTSL 5 BASIC1.75□□□□□ -2.13
SDC3O75056 ETDC-201ENST00000635820 180 ntAPPRIS P1 BASIC1.75□□□□□ -2.13
SDC3O75056 AC024614.3-201ENST00000637860 256 ntBASIC1.75□□□□□ -2.13
SDC3O75056 RNU6-661P-201ENST00000362409 107 ntBASIC1.74□□□□□ -2.13
SDC3O75056 Y_RNA.100-201ENST00000363141 102 ntBASIC1.74□□□□□ -2.13
SDC3O75056 RNU6-234P-201ENST00000365229 104 ntBASIC1.74□□□□□ -2.13
SDC3O75056 Y_RNA.373-201ENST00000365600 103 ntBASIC1.74□□□□□ -2.13
SDC3O75056 RNU6-378P-201ENST00000384324 107 ntBASIC1.74□□□□□ -2.13
SDC3O75056 TRAJ50-201ENST00000390487 60 ntAPPRIS P1 BASIC1.74□□□□□ -2.13
SDC3O75056 BTF3P4-201ENST00000418852 495 ntBASIC1.74□□□□□ -2.13
SDC3O75056 ZNF885P-201ENST00000420174 1098 ntBASIC1.74□□□□□ -2.13
SDC3O75056 LINC01344-201ENST00000420760 261 ntTSL 3 BASIC1.74□□□□□ -2.13
SDC3O75056 LINC02541-201ENST00000427157 327 ntTSL 3 BASIC1.74□□□□□ -2.13
SDC3O75056 USP9YP28-201ENST00000435142 589 ntBASIC1.74□□□□□ -2.13
SDC3O75056 AL603839.2-201ENST00000437060 546 ntTSL 5 BASIC1.74□□□□□ -2.13
SDC3O75056 RNU7-66P-201ENST00000459469 62 ntBASIC1.74□□□□□ -2.13
SDC3O75056 AC021146.2-201ENST00000504736 556 ntBASIC1.74□□□□□ -2.13
SDC3O75056 KRTAP13-6P-201ENST00000508999 371 ntBASIC1.74□□□□□ -2.13
SDC3O75056 FAM206BP-201ENST00000510179 541 ntBASIC1.74□□□□□ -2.13
SDC3O75056 AC005741.1-201ENST00000511094 432 ntBASIC1.74□□□□□ -2.13
SDC3O75056 MTND1P35-201ENST00000526739 508 ntBASIC1.74□□□□□ -2.13
SDC3O75056 HMSD-204ENST00000526932 162 ntTSL 3 BASIC1.74□□□□□ -2.13
SDC3O75056 AC087441.2-201ENST00000529141 262 ntBASIC1.74□□□□□ -2.13
SDC3O75056 AC126323.6-201ENST00000561701 451 ntTSL 3 BASIC1.74□□□□□ -2.13
SDC3O75056 AC109446.1-201ENST00000566172 220 ntBASIC1.74□□□□□ -2.13
SDC3O75056 MIR3122-201ENST00000577243 73 ntBASIC1.74□□□□□ -2.13
SDC3O75056 RBBP8-210ENST00000581687 617 ntTSL 2 BASIC1.74□□□□□ -2.13
SDC3O75056 CTHRC1P1-201ENST00000605383 469 ntBASIC1.74□□□□□ -2.13
SDC3O75056 RMST_3.1-201ENST00000611651 109 ntBASIC1.74□□□□□ -2.13
SDC3O75056 HOXA11-AS1_4.1-201ENST00000620901 233 ntBASIC1.74□□□□□ -2.13
SDC3O75056 AC130454.1-201ENST00000622948 401 ntBASIC1.74□□□□□ -2.13
SDC3O75056 MUC15-203ENST00000455601 3156 ntAPPRIS P1 TSL 2 BASIC1.73□□□□□ -2.13
SDC3O75056 ATP11C-202ENST00000361648 6010 ntAPPRIS ALT2 TSL 1 (best) BASIC1.73□□□□□ -2.13
SDC3O75056 RNU5B-2P-201ENST00000363036 113 ntBASIC1.73□□□□□ -2.13
SDC3O75056 SNORA16.1-201ENST00000364597 132 ntBASIC1.73□□□□□ -2.13
SDC3O75056 Y_RNA.332-201ENST00000365271 113 ntBASIC1.73□□□□□ -2.13
SDC3O75056 U8.10-201ENST00000384260 133 ntBASIC1.73□□□□□ -2.13
SDC3O75056 RNU6-1215P-201ENST00000384441 102 ntBASIC1.73□□□□□ -2.13
SDC3O75056 RNU6-332P-201ENST00000391193 108 ntBASIC1.73□□□□□ -2.13
SDC3O75056 RNU4-62P-201ENST00000410125 130 ntBASIC1.73□□□□□ -2.13
SDC3O75056 RNA5SP489-201ENST00000410986 109 ntBASIC1.73□□□□□ -2.13
SDC3O75056 RNA5SP501-201ENST00000410990 112 ntBASIC1.73□□□□□ -2.13
SDC3O75056 RNU6-325P-201ENST00000411132 105 ntBASIC1.73□□□□□ -2.13
SDC3O75056 SNRPG-202ENST00000413456 398 ntTSL 3 BASIC1.73□□□□□ -2.13
SDC3O75056 MTND3P9-201ENST00000429526 346 ntBASIC1.73□□□□□ -2.13
SDC3O75056 SNRPG-205ENST00000449935 428 ntTSL 1 (best) BASIC1.73□□□□□ -2.13
SDC3O75056 HMGN2P18-201ENST00000450680 270 ntBASIC1.73□□□□□ -2.13
SDC3O75056 LINC02540-201ENST00000455554 570 ntTSL 3 BASIC1.73□□□□□ -2.13
SDC3O75056 AC096711.1-201ENST00000510967 347 ntTSL 5 BASIC1.73□□□□□ -2.13
SDC3O75056 MIR4303-201ENST00000581299 66 ntBASIC1.73□□□□□ -2.13
SDC3O75056 AC104819.3-201ENST00000603264 540 ntTSL 4 BASIC1.73□□□□□ -2.13
SDC3O75056 snoU13.31-201ENST00000607291 104 ntBASIC1.73□□□□□ -2.13
SDC3O75056 MIR8076-201ENST00000611401 83 ntBASIC1.73□□□□□ -2.13
SDC3O75056 TDRD15-202ENST00000622654 5805 ntAPPRIS P1 BASIC1.73□□□□□ -2.13
SDC3O75056 AC233981.2-201ENST00000611524 1614 ntBASIC1.73□□□□□ -2.13
SDC3O75056 AC245060.5-201ENST00000610778 3293 ntBASIC1.72□□□□□ -2.13
SDC3O75056 PIK3C2G-203ENST00000535651 2497 ntTSL 5 BASIC1.72□□□□□ -2.13
SDC3O75056 Y_RNA.89-201ENST00000363031 102 ntBASIC1.72□□□□□ -2.13
SDC3O75056 RNU6-23P-201ENST00000363283 107 ntBASIC1.72□□□□□ -2.13
Retrieved 100 of 98,524 protein–RNA pairs in 219.5 ms