Protein–RNA interactions for Protein: Q9UN37

VPS4A, Vacuolar protein sorting-associated protein 4A, humanhuman

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4AQ9UN37 AC083973.1-205ENST00000518994 601 ntTSL 2 BASIC2.77□□□□□ -1.97
VPS4AQ9UN37 AC144568.1-201ENST00000520139 137 ntBASIC2.77□□□□□ -1.97
VPS4AQ9UN37 MIR5188-201ENST00000583467 113 ntBASIC2.77□□□□□ -1.97
VPS4AQ9UN37 7SK.7-201ENST00000603504 247 ntBASIC2.77□□□□□ -1.97
VPS4AQ9UN37 Z84484.1-202ENST00000612718 60 ntTSL 5 BASIC2.77□□□□□ -1.97
VPS4AQ9UN37 AL138825.1-201ENST00000618587 192 ntBASIC2.77□□□□□ -1.97
VPS4AQ9UN37 AC137590.2-201ENST00000619709 240 ntBASIC2.77□□□□□ -1.97
VPS4AQ9UN37 AC243829.7-201ENST00000633081 225 ntBASIC2.77□□□□□ -1.97
VPS4AQ9UN37 AC026241.1-201ENST00000517873 2142 ntBASIC2.77□□□□□ -1.97
VPS4AQ9UN37 LUZP4-201ENST00000371920 1701 ntAPPRIS P2 TSL 1 (best) BASIC2.76□□□□□ -1.97
VPS4AQ9UN37 PSG1-205ENST00000595124 1692 ntTSL 2 BASIC2.76□□□□□ -1.97
VPS4AQ9UN37 CCDC178-213ENST00000583930 3094 ntAPPRIS ALT2 TSL 1 (best) BASIC2.76□□□□□ -1.97
VPS4AQ9UN37 COPS2-203ENST00000542928 1580 ntTSL 2 BASIC2.76□□□□□ -1.97
VPS4AQ9UN37 RNU1-35P-201ENST00000362782 153 ntBASIC2.76□□□□□ -1.97
VPS4AQ9UN37 Y_RNA.485-201ENST00000384395 102 ntBASIC2.76□□□□□ -1.97
VPS4AQ9UN37 MIR196B-201ENST00000384852 84 ntBASIC2.76□□□□□ -1.97
VPS4AQ9UN37 SNORA69.1-201ENST00000390904 137 ntBASIC2.76□□□□□ -1.97
VPS4AQ9UN37 CBX3P9-201ENST00000402326 552 ntBASIC2.76□□□□□ -1.97
VPS4AQ9UN37 RNU6-1328P-201ENST00000410938 106 ntBASIC2.76□□□□□ -1.97
VPS4AQ9UN37 HMGN2P35-201ENST00000412164 270 ntBASIC2.76□□□□□ -1.97
VPS4AQ9UN37 AC113618.1-201ENST00000416747 285 ntBASIC2.76□□□□□ -1.97
VPS4AQ9UN37 AL513477.1-202ENST00000417061 214 ntBASIC2.76□□□□□ -1.97
VPS4AQ9UN37 AC073323.1-201ENST00000419832 451 ntTSL 2 BASIC2.76□□□□□ -1.97
VPS4AQ9UN37 AC097463.2-201ENST00000421074 142 ntBASIC2.76□□□□□ -1.97
VPS4AQ9UN37 AC012306.1-201ENST00000423267 114 ntBASIC2.76□□□□□ -1.97
VPS4AQ9UN37 AC092423.1-201ENST00000430165 186 ntBASIC2.76□□□□□ -1.97
VPS4AQ9UN37 AC092813.2-201ENST00000434540 399 ntTSL 3 BASIC2.76□□□□□ -1.97
VPS4AQ9UN37 UBBP3-201ENST00000445497 241 ntBASIC2.76□□□□□ -1.97
VPS4AQ9UN37 OR2AQ1P-201ENST00000451972 200 ntBASIC2.76□□□□□ -1.97
VPS4AQ9UN37 AC090525.1-201ENST00000479116 478 ntBASIC2.76□□□□□ -1.97
VPS4AQ9UN37 AC093852.1-201ENST00000503587 266 ntBASIC2.76□□□□□ -1.97
VPS4AQ9UN37 AC021146.2-201ENST00000504736 556 ntBASIC2.76□□□□□ -1.97
VPS4AQ9UN37 AC008243.1-201ENST00000504955 389 ntTSL 3 BASIC2.76□□□□□ -1.97
VPS4AQ9UN37 SAR1B-211ENST00000509937 455 ntTSL 5 BASIC2.76□□□□□ -1.97
VPS4AQ9UN37 RNU6-237P-201ENST00000515985 71 ntBASIC2.76□□□□□ -1.97
VPS4AQ9UN37 AP002770.2-201ENST00000543613 532 ntBASIC2.76□□□□□ -1.97
VPS4AQ9UN37 LINC02253-201ENST00000559321 448 ntTSL 2 BASIC2.76□□□□□ -1.97
VPS4AQ9UN37 AC090510.1-201ENST00000567456 425 ntTSL 3 BASIC2.76□□□□□ -1.97
VPS4AQ9UN37 AC024270.4-201ENST00000570202 421 ntTSL 3 BASIC2.76□□□□□ -1.97
VPS4AQ9UN37 VN1R91P-201ENST00000594377 169 ntBASIC2.76□□□□□ -1.97
VPS4AQ9UN37 Z98751.3-201ENST00000604447 521 ntBASIC2.76□□□□□ -1.97
VPS4AQ9UN37 AC090115.4-201ENST00000609970 188 ntBASIC2.76□□□□□ -1.97
VPS4AQ9UN37 MESTIT1_1.1-201ENST00000618871 140 ntBASIC2.76□□□□□ -1.97
VPS4AQ9UN37 SNORD98-201ENST00000636377 67 ntBASIC2.76□□□□□ -1.97
VPS4AQ9UN37 CEP57L1-223ENST00000523787 2522 ntAPPRIS ALT2 TSL 5 BASIC2.76□□□□□ -1.97
VPS4AQ9UN37 ARHGAP5-202ENST00000345122 9604 ntAPPRIS P3 TSL 5 BASIC2.76□□□□□ -1.97
VPS4AQ9UN37 PRKACB-207ENST00000394838 4294 ntTSL 5 BASIC2.76□□□□□ -1.97
VPS4AQ9UN37 AC091812.1-201ENST00000432235 1948 ntBASIC2.76□□□□□ -1.97
VPS4AQ9UN37 TSLP-202ENST00000379706 2411 ntTSL 1 (best) BASIC2.76□□□□□ -1.97
VPS4AQ9UN37 CACNB4-238ENST00000636901 7706 ntTSL 5 BASIC2.75□□□□□ -1.97
VPS4AQ9UN37 PLS1-201ENST00000337777 3755 ntAPPRIS P1 TSL 1 (best) BASIC2.75□□□□□ -1.97
VPS4AQ9UN37 OGN-202ENST00000375561 2743 ntAPPRIS P1 TSL 1 (best) BASIC2.75□□□□□ -1.97
VPS4AQ9UN37 AC062016.1-201ENST00000355719 319 ntBASIC2.75□□□□□ -1.97
VPS4AQ9UN37 RNU6-851P-201ENST00000384565 107 ntBASIC2.75□□□□□ -1.97
VPS4AQ9UN37 NPS-201ENST00000398023 270 ntAPPRIS P1 TSL 5 BASIC2.75□□□□□ -1.97
VPS4AQ9UN37 RNA5SP201-201ENST00000410316 124 ntBASIC2.75□□□□□ -1.97
VPS4AQ9UN37 AL590135.1-201ENST00000422215 156 ntBASIC2.75□□□□□ -1.97
VPS4AQ9UN37 AC019205.3-201ENST00000424573 156 ntBASIC2.75□□□□□ -1.97
VPS4AQ9UN37 EIF4EP4-201ENST00000424916 578 ntBASIC2.75□□□□□ -1.97
VPS4AQ9UN37 RPS29P6-201ENST00000438196 145 ntBASIC2.75□□□□□ -1.97
VPS4AQ9UN37 AC016700.2-201ENST00000446011 156 ntBASIC2.75□□□□□ -1.97
VPS4AQ9UN37 AC112771.1-201ENST00000463581 102 ntBASIC2.75□□□□□ -1.97
VPS4AQ9UN37 RPS29P26-201ENST00000477483 171 ntBASIC2.75□□□□□ -1.97
VPS4AQ9UN37 RPL23AP70-201ENST00000483361 460 ntBASIC2.75□□□□□ -1.97
VPS4AQ9UN37 AC015911.1-201ENST00000495111 156 ntBASIC2.75□□□□□ -1.97
VPS4AQ9UN37 SEM1P1-201ENST00000506694 209 ntBASIC2.75□□□□□ -1.97
VPS4AQ9UN37 AC027288.2-201ENST00000553028 243 ntBASIC2.75□□□□□ -1.97
VPS4AQ9UN37 AC073410.2-201ENST00000603240 332 ntBASIC2.75□□□□□ -1.97
VPS4AQ9UN37 AC016727.2-201ENST00000603988 621 ntBASIC2.75□□□□□ -1.97
VPS4AQ9UN37 AL162373.1-201ENST00000620433 407 ntBASIC2.75□□□□□ -1.97
VPS4AQ9UN37 AC010329.5-201ENST00000623497 2174 ntBASIC2.75□□□□□ -1.97
VPS4AQ9UN37 N4BP2L2-205ENST00000446957 2071 ntTSL 5 BASIC2.75□□□□□ -1.97
VPS4AQ9UN37 ANKAR-201ENST00000313581 4391 ntAPPRIS P1 TSL 1 (best) BASIC2.75□□□□□ -1.97
VPS4AQ9UN37 GLMN-201ENST00000370360 1995 ntAPPRIS P1 TSL 1 (best) BASIC2.74□□□□□ -1.97
VPS4AQ9UN37 IDE-201ENST00000265986 5877 ntAPPRIS P1 TSL 1 (best) BASIC2.74□□□□□ -1.97
VPS4AQ9UN37 HERC4-201ENST00000277817 4371 ntTSL 1 (best) BASIC2.74□□□□□ -1.97
VPS4AQ9UN37 OR2L2-203ENST00000642011 4225 ntAPPRIS P1 BASIC2.74□□□□□ -1.97
VPS4AQ9UN37 RNU6-1210P-201ENST00000363775 107 ntBASIC2.74□□□□□ -1.97
VPS4AQ9UN37 RNY3P11-201ENST00000364153 102 ntBASIC2.74□□□□□ -1.97
VPS4AQ9UN37 SNORD56.5-201ENST00000364281 72 ntBASIC2.74□□□□□ -1.97
VPS4AQ9UN37 MIR512-1-201ENST00000384913 84 ntBASIC2.74□□□□□ -1.97
VPS4AQ9UN37 MIR153-2-201ENST00000385225 87 ntBASIC2.74□□□□□ -1.97
VPS4AQ9UN37 RNU1-139P-201ENST00000391307 165 ntBASIC2.74□□□□□ -1.97
VPS4AQ9UN37 AC138623.1-201ENST00000418060 216 ntBASIC2.74□□□□□ -1.97
VPS4AQ9UN37 LINC00459-201ENST00000431656 376 ntTSL 2 BASIC2.74□□□□□ -1.97
VPS4AQ9UN37 LINC02336-201ENST00000434117 330 ntTSL 3 BASIC2.74□□□□□ -1.97
VPS4AQ9UN37 LINC00448-201ENST00000438352 402 ntTSL 3 BASIC2.74□□□□□ -1.97
VPS4AQ9UN37 AC007215.1-201ENST00000464893 276 ntBASIC2.74□□□□□ -1.97
VPS4AQ9UN37 APOA2-205ENST00000468465 421 ntTSL 2 BASIC2.74□□□□□ -1.97
VPS4AQ9UN37 SNRPGP7-201ENST00000469016 106 ntBASIC2.74□□□□□ -1.97
VPS4AQ9UN37 HMGN1P10-201ENST00000474557 553 ntBASIC2.74□□□□□ -1.97
VPS4AQ9UN37 ANXA2P1-201ENST00000505539 926 ntBASIC2.74□□□□□ -1.97
VPS4AQ9UN37 Y_RNA.706-201ENST00000516933 99 ntBASIC2.74□□□□□ -1.97
VPS4AQ9UN37 Y_RNA.720-201ENST00000517166 92 ntBASIC2.74□□□□□ -1.97
VPS4AQ9UN37 MIR2355-201ENST00000517199 87 ntBASIC2.74□□□□□ -1.97
VPS4AQ9UN37 AC091544.4-201ENST00000555268 342 ntBASIC2.74□□□□□ -1.97
VPS4AQ9UN37 CYP4A27P-201ENST00000567218 190 ntBASIC2.74□□□□□ -1.97
VPS4AQ9UN37 AC136443.5-201ENST00000603741 370 ntBASIC2.74□□□□□ -1.97
VPS4AQ9UN37 AL355596.1-201ENST00000565399 3996 ntBASIC2.74□□□□□ -1.97
VPS4AQ9UN37 CHD9-202ENST00000398510 11337 ntTSL 1 (best) BASIC2.74□□□□□ -1.97
Retrieved 100 of 98,524 protein–RNA pairs in 146.2 ms