Protein–RNA interactions for Protein: Q9NY93

DDX56, Probable ATP-dependent RNA helicase DDX56, humanhuman

Known RBP Predictions only

Length 547 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX56Q9NY93 USP9YP16-201ENST00000430287 407 ntBASIC3□□□□□ -1.93
DDX56Q9NY93 AC004386.2-201ENST00000441858 148 ntBASIC3□□□□□ -1.93
DDX56Q9NY93 U91324.1-201ENST00000442864 447 ntTSL 5 BASIC3□□□□□ -1.93
DDX56Q9NY93 ITCH-AS1-201ENST00000454205 299 ntTSL 5 BASIC3□□□□□ -1.93
DDX56Q9NY93 USP9YP23-201ENST00000455085 407 ntBASIC3□□□□□ -1.93
DDX56Q9NY93 LINC01203-202ENST00000456091 476 ntTSL 3 BASIC3□□□□□ -1.93
DDX56Q9NY93 SAR1B-211ENST00000509937 455 ntTSL 5 BASIC3□□□□□ -1.93
DDX56Q9NY93 AC108037.1-201ENST00000514103 423 ntTSL 3 BASIC3□□□□□ -1.93
DDX56Q9NY93 RNU6-1098P-201ENST00000516772 96 ntBASIC3□□□□□ -1.93
DDX56Q9NY93 RNA5SP137-201ENST00000516833 135 ntBASIC3□□□□□ -1.93
DDX56Q9NY93 RNU1-104P-201ENST00000517280 175 ntBASIC3□□□□□ -1.93
DDX56Q9NY93 AC025871.1-202ENST00000518819 432 ntTSL 3 BASIC3□□□□□ -1.93
DDX56Q9NY93 AP000755.2-201ENST00000526777 571 ntTSL 5 BASIC3□□□□□ -1.93
DDX56Q9NY93 AC027288.2-201ENST00000553028 243 ntBASIC3□□□□□ -1.93
DDX56Q9NY93 ANP32BP3-201ENST00000559213 706 ntBASIC3□□□□□ -1.93
DDX56Q9NY93 NPPA-AS1_3.1-201ENST00000617059 108 ntBASIC3□□□□□ -1.93
DDX56Q9NY93 NEBL-202ENST00000377122 9216 ntTSL 1 (best) BASIC3□□□□□ -1.93
DDX56Q9NY93 CHD9-218ENST00000566029 13110 ntAPPRIS P1 TSL 1 (best) BASIC2.99□□□□□ -1.93
DDX56Q9NY93 TAB3-203ENST00000378930 6255 ntAPPRIS P1 TSL 1 (best) BASIC2.99□□□□□ -1.93
DDX56Q9NY93 RNU6-99P-201ENST00000364721 107 ntBASIC2.99□□□□□ -1.93
DDX56Q9NY93 Y_RNA.364-201ENST00000365532 101 ntBASIC2.99□□□□□ -1.93
DDX56Q9NY93 MIR300-201ENST00000401138 83 ntBASIC2.99□□□□□ -1.93
DDX56Q9NY93 RNA5SP270-201ENST00000411361 118 ntBASIC2.99□□□□□ -1.93
DDX56Q9NY93 AL354751.2-201ENST00000415471 210 ntBASIC2.99□□□□□ -1.93
DDX56Q9NY93 LINC01870-201ENST00000427042 390 ntTSL 3 BASIC2.99□□□□□ -1.93
DDX56Q9NY93 AC009237.7-201ENST00000447357 229 ntBASIC2.99□□□□□ -1.93
DDX56Q9NY93 PRELID3BP1-201ENST00000457142 540 ntBASIC2.99□□□□□ -1.93
DDX56Q9NY93 AC096721.1-201ENST00000513540 552 ntTSL 4 BASIC2.99□□□□□ -1.93
DDX56Q9NY93 RNU7-4P-201ENST00000516961 62 ntBASIC2.99□□□□□ -1.93
DDX56Q9NY93 RNU6-699P-201ENST00000517081 110 ntBASIC2.99□□□□□ -1.93
DDX56Q9NY93 SMARCAD1-201ENST00000354268 4912 ntAPPRIS P3 TSL 1 (best) BASIC2.99□□□□□ -1.93
DDX56Q9NY93 MCF2-208ENST00000519895 3346 ntAPPRIS ALT2 TSL 2 BASIC2.99□□□□□ -1.93
DDX56Q9NY93 OR8K3-204ENST00000641689 2380 ntAPPRIS P1 BASIC2.98□□□□□ -1.93
DDX56Q9NY93 CHD9-203ENST00000447540 11509 ntTSL 5 BASIC2.98□□□□□ -1.93
DDX56Q9NY93 RNU6-474P-201ENST00000384243 107 ntBASIC2.98□□□□□ -1.93
DDX56Q9NY93 Y_RNA.463-201ENST00000384271 102 ntBASIC2.98□□□□□ -1.93
DDX56Q9NY93 MIR181A2-201ENST00000384863 110 ntBASIC2.98□□□□□ -1.93
DDX56Q9NY93 MIR181B1-201ENST00000385240 110 ntBASIC2.98□□□□□ -1.93
DDX56Q9NY93 RNU6-159P-201ENST00000391080 106 ntBASIC2.98□□□□□ -1.93
DDX56Q9NY93 PLCL2-AS1-201ENST00000414844 311 ntTSL 2 BASIC2.98□□□□□ -1.93
DDX56Q9NY93 MAGEA8-AS1-201ENST00000427671 476 ntTSL 3 BASIC2.98□□□□□ -1.93
DDX56Q9NY93 AC022018.1-201ENST00000430685 241 ntBASIC2.98□□□□□ -1.93
DDX56Q9NY93 CEP57L1P1-201ENST00000430943 1201 ntBASIC2.98□□□□□ -1.93
DDX56Q9NY93 AC099799.1-201ENST00000439809 192 ntBASIC2.98□□□□□ -1.93
DDX56Q9NY93 HMGN2P18-201ENST00000450680 270 ntBASIC2.98□□□□□ -1.93
DDX56Q9NY93 Y_RNA.639-201ENST00000458981 102 ntBASIC2.98□□□□□ -1.93
DDX56Q9NY93 SCGB1D5P-201ENST00000515134 247 ntBASIC2.98□□□□□ -1.93
DDX56Q9NY93 RNU6-1114P-201ENST00000516022 107 ntBASIC2.98□□□□□ -1.93
DDX56Q9NY93 SNORA9.3-201ENST00000516383 129 ntBASIC2.98□□□□□ -1.93
DDX56Q9NY93 AP001318.2-201ENST00000533378 492 ntTSL 3 BASIC2.98□□□□□ -1.93
DDX56Q9NY93 AC126323.6-201ENST00000561701 451 ntTSL 3 BASIC2.98□□□□□ -1.93
DDX56Q9NY93 MIR5194-201ENST00000582634 120 ntBASIC2.98□□□□□ -1.93
DDX56Q9NY93 RPL12P50-201ENST00000603116 116 ntBASIC2.98□□□□□ -1.93
DDX56Q9NY93 PRB2-201ENST00000389362 1429 ntAPPRIS P2 TSL 5 BASIC2.98□□□□□ -1.93
DDX56Q9NY93 ADGRG7-202ENST00000475887 2035 ntTSL 2 BASIC2.98□□□□□ -1.93
DDX56Q9NY93 FGF14-201ENST00000376131 12882 ntTSL 1 (best) BASIC2.98□□□□□ -1.93
DDX56Q9NY93 AC009487.2-201ENST00000420969 6821 ntBASIC2.97□□□□□ -1.93
DDX56Q9NY93 TBC1D31-214ENST00000522420 3167 ntTSL 1 (best) BASIC2.97□□□□□ -1.93
DDX56Q9NY93 SLC39A10-201ENST00000359634 5322 ntAPPRIS P1 TSL 1 (best) BASIC2.97□□□□□ -1.93
DDX56Q9NY93 ZBTB26-202ENST00000373656 4443 ntAPPRIS P1 TSL 1 (best) BASIC2.97□□□□□ -1.93
DDX56Q9NY93 MIR422A-201ENST00000362286 90 ntBASIC2.97□□□□□ -1.93
DDX56Q9NY93 RNA5SP374-201ENST00000362939 125 ntBASIC2.97□□□□□ -1.93
DDX56Q9NY93 Y_RNA.106-201ENST00000363189 100 ntBASIC2.97□□□□□ -1.93
DDX56Q9NY93 SNORD31B-201ENST00000364977 69 ntBASIC2.97□□□□□ -1.93
DDX56Q9NY93 SNORA18.3-201ENST00000384122 132 ntBASIC2.97□□□□□ -1.93
DDX56Q9NY93 MIR29C-201ENST00000385231 88 ntBASIC2.97□□□□□ -1.93
DDX56Q9NY93 AL356057.3-201ENST00000402607 340 ntBASIC2.97□□□□□ -1.93
DDX56Q9NY93 RN7SKP284-201ENST00000411002 343 ntBASIC2.97□□□□□ -1.93
DDX56Q9NY93 AC020743.3-201ENST00000440351 360 ntTSL 3 BASIC2.97□□□□□ -1.93
DDX56Q9NY93 RPL39P40-201ENST00000445481 146 ntBASIC2.97□□□□□ -1.93
DDX56Q9NY93 RNU7-87P-201ENST00000459343 62 ntBASIC2.97□□□□□ -1.93
DDX56Q9NY93 RPL7P49-201ENST00000471402 708 ntBASIC2.97□□□□□ -1.93
DDX56Q9NY93 AC093259.1-201ENST00000509755 300 ntBASIC2.97□□□□□ -1.93
DDX56Q9NY93 SNORA25.14-201ENST00000516481 132 ntBASIC2.97□□□□□ -1.93
DDX56Q9NY93 AC144568.1-201ENST00000520139 137 ntBASIC2.97□□□□□ -1.93
DDX56Q9NY93 AP003465.1-201ENST00000520575 382 ntTSL 2 BASIC2.97□□□□□ -1.93
DDX56Q9NY93 AC012229.1-201ENST00000558699 499 ntTSL 4 BASIC2.97□□□□□ -1.93
DDX56Q9NY93 AC074050.1-201ENST00000563247 211 ntBASIC2.97□□□□□ -1.93
DDX56Q9NY93 AC090510.1-201ENST00000567456 425 ntTSL 3 BASIC2.97□□□□□ -1.93
DDX56Q9NY93 MIR3605-201ENST00000583214 100 ntBASIC2.97□□□□□ -1.93
DDX56Q9NY93 AL031274.2-201ENST00000599419 203 ntBASIC2.97□□□□□ -1.93
DDX56Q9NY93 SNORD14A-201ENST00000606526 91 ntBASIC2.97□□□□□ -1.93
DDX56Q9NY93 uc_338.22-201ENST00000622722 187 ntBASIC2.97□□□□□ -1.93
DDX56Q9NY93 MT-ND4-201ENST00000361381 1378 ntAPPRIS P1 BASIC2.97□□□□□ -1.93
DDX56Q9NY93 CHD9-202ENST00000398510 11337 ntTSL 1 (best) BASIC2.97□□□□□ -1.93
DDX56Q9NY93 GCNT4-201ENST00000322348 5554 ntAPPRIS P1 BASIC2.97□□□□□ -1.93
DDX56Q9NY93 ZNF280D-201ENST00000267807 4328 ntAPPRIS P3 TSL 1 (best) BASIC2.97□□□□□ -1.93
DDX56Q9NY93 WDR3-201ENST00000349139 9974 ntAPPRIS P1 TSL 1 (best) BASIC2.97□□□□□ -1.93
DDX56Q9NY93 Y_RNA.5-201ENST00000362334 102 ntBASIC2.96□□□□□ -1.94
DDX56Q9NY93 RNU6-1115P-201ENST00000362490 106 ntBASIC2.96□□□□□ -1.94
DDX56Q9NY93 RNU1-62P-201ENST00000362599 164 ntBASIC2.96□□□□□ -1.94
DDX56Q9NY93 Y_RNA.99-201ENST00000363138 105 ntBASIC2.96□□□□□ -1.94
DDX56Q9NY93 Y_RNA.395-201ENST00000383945 109 ntBASIC2.96□□□□□ -1.94
DDX56Q9NY93 RNU1-139P-201ENST00000391307 165 ntBASIC2.96□□□□□ -1.94
DDX56Q9NY93 AL138885.1-201ENST00000405921 675 ntBASIC2.96□□□□□ -1.94
DDX56Q9NY93 AL355388.1-201ENST00000415726 401 ntTSL 2 BASIC2.96□□□□□ -1.94
DDX56Q9NY93 MRPS18CP6-201ENST00000423587 223 ntBASIC2.96□□□□□ -1.94
DDX56Q9NY93 LINC01564-201ENST00000448327 566 ntTSL 3 BASIC2.96□□□□□ -1.94
DDX56Q9NY93 AC074290.1-201ENST00000448883 135 ntBASIC2.96□□□□□ -1.94
DDX56Q9NY93 MTCO3P8-201ENST00000453691 755 ntBASIC2.96□□□□□ -1.94
Retrieved 100 of 98,524 protein–RNA pairs in 192.4 ms