Protein–RNA interactions for Protein: Q99567

NUP88, Nuclear pore complex protein Nup88, humanhuman

Predicted RBP Predictions only

Length 741 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88Q99567 RNU4-15P-201ENST00000362613 141 ntBASIC3.07□□□□□ -1.92
NUP88Q99567 SNORD42.2-201ENST00000365570 69 ntBASIC3.07□□□□□ -1.92
NUP88Q99567 Y_RNA.605-201ENST00000410577 105 ntBASIC3.07□□□□□ -1.92
NUP88Q99567 AL592435.1-201ENST00000416401 469 ntTSL 3 BASIC3.07□□□□□ -1.92
NUP88Q99567 AC009963.1-201ENST00000417265 157 ntBASIC3.07□□□□□ -1.92
NUP88Q99567 LINC01344-201ENST00000420760 261 ntTSL 3 BASIC3.07□□□□□ -1.92
NUP88Q99567 MRPS18CP6-201ENST00000423587 223 ntBASIC3.07□□□□□ -1.92
NUP88Q99567 LINC01628-201ENST00000444266 397 ntTSL 2 BASIC3.07□□□□□ -1.92
NUP88Q99567 OR2AQ1P-201ENST00000451972 200 ntBASIC3.07□□□□□ -1.92
NUP88Q99567 CYP2C59P-201ENST00000457790 269 ntBASIC3.07□□□□□ -1.92
NUP88Q99567 Y_RNA.639-201ENST00000458981 102 ntBASIC3.07□□□□□ -1.92
NUP88Q99567 SRI-210ENST00000490437 570 ntTSL 2 BASIC3.07□□□□□ -1.92
NUP88Q99567 AC004052.1-202ENST00000505680 516 ntTSL 3 BASIC3.07□□□□□ -1.92
NUP88Q99567 ELOCP31-201ENST00000540463 467 ntBASIC3.07□□□□□ -1.92
NUP88Q99567 LINC02386-203ENST00000552182 501 ntTSL 3 BASIC3.07□□□□□ -1.92
NUP88Q99567 AL132819.1-201ENST00000555595 208 ntTSL 3 BASIC3.07□□□□□ -1.92
NUP88Q99567 AC074052.2-201ENST00000562516 214 ntTSL 3 BASIC3.07□□□□□ -1.92
NUP88Q99567 MIR5701-3-201ENST00000578890 82 ntBASIC3.07□□□□□ -1.92
NUP88Q99567 MIR4635-201ENST00000583759 79 ntBASIC3.07□□□□□ -1.92
NUP88Q99567 MIR5701-1-201ENST00000585138 82 ntBASIC3.07□□□□□ -1.92
NUP88Q99567 AC012594.1-269ENST00000600489 628 ntTSL 5 BASIC3.07□□□□□ -1.92
NUP88Q99567 AL713866.2-201ENST00000603579 219 ntBASIC3.07□□□□□ -1.92
NUP88Q99567 ZNRD1-AS1_2.5-201ENST00000614729 76 ntBASIC3.07□□□□□ -1.92
NUP88Q99567 MIR5701-2-201ENST00000615634 82 ntBASIC3.07□□□□□ -1.92
NUP88Q99567 AC134503.1-201ENST00000633048 54 ntBASIC3.07□□□□□ -1.92
NUP88Q99567 FOXP2-210ENST00000403559 6415 ntTSL 2 BASIC3.07□□□□□ -1.92
NUP88Q99567 PIK3C2G-206ENST00000538779 4963 ntTSL 5 BASIC3.07□□□□□ -1.92
NUP88Q99567 NOC3L-201ENST00000371361 3455 ntAPPRIS P1 TSL 1 (best) BASIC3.06□□□□□ -1.92
NUP88Q99567 GAGE12B-201ENST00000361446 117 ntAPPRIS P1 BASIC3.06□□□□□ -1.92
NUP88Q99567 Y_RNA.128-201ENST00000363391 112 ntBASIC3.06□□□□□ -1.92
NUP88Q99567 SNORD115-32-201ENST00000364079 82 ntBASIC3.06□□□□□ -1.92
NUP88Q99567 RNU6-378P-201ENST00000384324 107 ntBASIC3.06□□□□□ -1.92
NUP88Q99567 SNORA46.1-201ENST00000391069 153 ntBASIC3.06□□□□□ -1.92
NUP88Q99567 MIR190B-201ENST00000401119 79 ntBASIC3.06□□□□□ -1.92
NUP88Q99567 AC092427.1-202ENST00000430569 476 ntBASIC3.06□□□□□ -1.92
NUP88Q99567 RNU7-169P-201ENST00000459456 61 ntBASIC3.06□□□□□ -1.92
NUP88Q99567 MAP4K3-205ENST00000437545 3924 ntTSL 5 BASIC3.06□□□□□ -1.92
NUP88Q99567 ERBIN-202ENST00000380935 6692 ntTSL 5 BASIC3.06□□□□□ -1.92
NUP88Q99567 SENP7-205ENST00000394091 4434 ntAPPRIS ALT2 TSL 1 (best) BASIC3.05□□□□□ -1.92
NUP88Q99567 RNU1-72P-201ENST00000362976 153 ntBASIC3.05□□□□□ -1.92
NUP88Q99567 U3.9-201ENST00000363823 204 ntBASIC3.05□□□□□ -1.92
NUP88Q99567 Y_RNA.319-201ENST00000365138 92 ntBASIC3.05□□□□□ -1.92
NUP88Q99567 MIR887-201ENST00000401258 79 ntBASIC3.05□□□□□ -1.92
NUP88Q99567 MIR548P-201ENST00000408336 84 ntBASIC3.05□□□□□ -1.92
NUP88Q99567 Y_RNA.597-201ENST00000410463 100 ntBASIC3.05□□□□□ -1.92
NUP88Q99567 AC005534.2-201ENST00000431047 433 ntBASIC3.05□□□□□ -1.92
NUP88Q99567 AC091153.2-202ENST00000441700 384 ntTSL 3 BASIC3.05□□□□□ -1.92
NUP88Q99567 AP000705.1-201ENST00000454567 350 ntBASIC3.05□□□□□ -1.92
NUP88Q99567 AC144568.1-201ENST00000520139 137 ntBASIC3.05□□□□□ -1.92
NUP88Q99567 GNG2-205ENST00000554736 569 ntAPPRIS P1 TSL 4 BASIC3.05□□□□□ -1.92
NUP88Q99567 AC006504.5-204ENST00000592404 765 ntTSL 3 BASIC3.05□□□□□ -1.92
NUP88Q99567 AL356055.1-201ENST00000602528 446 ntBASIC3.05□□□□□ -1.92
NUP88Q99567 AL355297.2-201ENST00000604792 129 ntBASIC3.05□□□□□ -1.92
NUP88Q99567 AC006157.1-201ENST00000611750 366 ntBASIC3.05□□□□□ -1.92
NUP88Q99567 uc_338.22-201ENST00000622722 187 ntBASIC3.05□□□□□ -1.92
NUP88Q99567 N4BP2L2-211ENST00000504114 2513 ntTSL 5 BASIC3.05□□□□□ -1.92
NUP88Q99567 CEP57L1-216ENST00000521522 2259 ntTSL 5 BASIC3.05□□□□□ -1.92
NUP88Q99567 SLCO1B3-201ENST00000261196 2840 ntAPPRIS P1 TSL 1 (best) BASIC3.05□□□□□ -1.92
NUP88Q99567 CHD9-202ENST00000398510 11337 ntTSL 1 (best) BASIC3.05□□□□□ -1.92
NUP88Q99567 SLC30A6-202ENST00000357055 4758 ntTSL 2 BASIC3.04□□□□□ -1.92
NUP88Q99567 N4BP2L2-205ENST00000446957 2071 ntTSL 5 BASIC3.04□□□□□ -1.92
NUP88Q99567 RNA5SP240-201ENST00000365355 128 ntBASIC3.04□□□□□ -1.92
NUP88Q99567 RNU6-1274P-201ENST00000384557 107 ntBASIC3.04□□□□□ -1.92
NUP88Q99567 MIR487A-201ENST00000385009 80 ntBASIC3.04□□□□□ -1.92
NUP88Q99567 MIR628-201ENST00000385229 95 ntBASIC3.04□□□□□ -1.92
NUP88Q99567 SNORA12-201ENST00000391162 147 ntBASIC3.04□□□□□ -1.92
NUP88Q99567 USP9YP16-201ENST00000430287 407 ntBASIC3.04□□□□□ -1.92
NUP88Q99567 AL354949.1-201ENST00000446438 170 ntTSL 2 BASIC3.04□□□□□ -1.92
NUP88Q99567 AL513328.1-201ENST00000446460 224 ntBASIC3.04□□□□□ -1.92
NUP88Q99567 USP9YP23-201ENST00000455085 407 ntBASIC3.04□□□□□ -1.92
NUP88Q99567 AC008243.1-201ENST00000504955 389 ntTSL 3 BASIC3.04□□□□□ -1.92
NUP88Q99567 AC113383.1-204ENST00000507060 552 ntTSL 3 BASIC3.04□□□□□ -1.92
NUP88Q99567 AC013412.1-201ENST00000610687 192 ntBASIC3.04□□□□□ -1.92
NUP88Q99567 PCGEM1.1-201ENST00000613431 131 ntBASIC3.04□□□□□ -1.92
NUP88Q99567 TEX41-243ENST00000614173 190 ntTSL 5 BASIC3.04□□□□□ -1.92
NUP88Q99567 MGAT4C-210ENST00000620241 3194 ntAPPRIS P1 TSL 2 BASIC3.04□□□□□ -1.92
NUP88Q99567 SYTL2-230ENST00000634661 6672 ntTSL 5 BASIC3.03□□□□□ -1.92
NUP88Q99567 ANKRD18EP-201ENST00000405487 2632 ntBASIC3.03□□□□□ -1.92
NUP88Q99567 CACNB4-238ENST00000636901 7706 ntTSL 5 BASIC3.03□□□□□ -1.92
NUP88Q99567 Y_RNA.5-201ENST00000362334 102 ntBASIC3.03□□□□□ -1.92
NUP88Q99567 Y_RNA.106-201ENST00000363189 100 ntBASIC3.03□□□□□ -1.92
NUP88Q99567 SNORA63-201ENST00000363450 132 ntBASIC3.03□□□□□ -1.92
NUP88Q99567 RNY3P11-201ENST00000364153 102 ntBASIC3.03□□□□□ -1.92
NUP88Q99567 Y_RNA.358-201ENST00000365491 99 ntBASIC3.03□□□□□ -1.92
NUP88Q99567 RNU6-474P-201ENST00000384243 107 ntBASIC3.03□□□□□ -1.92
NUP88Q99567 RNU6-17P-201ENST00000384245 107 ntBASIC3.03□□□□□ -1.92
NUP88Q99567 RNU6-18P-201ENST00000384527 107 ntBASIC3.03□□□□□ -1.92
NUP88Q99567 SNORA69.1-201ENST00000390904 137 ntBASIC3.03□□□□□ -1.92
NUP88Q99567 MIR320B2-201ENST00000408479 138 ntBASIC3.03□□□□□ -1.92
NUP88Q99567 LINC00407-201ENST00000426509 295 ntTSL 5 BASIC3.03□□□□□ -1.92
NUP88Q99567 AL445305.1-201ENST00000432577 575 ntBASIC3.03□□□□□ -1.92
NUP88Q99567 RPL21P2-201ENST00000440049 481 ntBASIC3.03□□□□□ -1.92
NUP88Q99567 AL161788.1-201ENST00000441805 169 ntBASIC3.03□□□□□ -1.92
NUP88Q99567 AL035666.1-201ENST00000446195 348 ntBASIC3.03□□□□□ -1.92
NUP88Q99567 EEF1B2P7-201ENST00000451177 676 ntBASIC3.03□□□□□ -1.92
NUP88Q99567 AC090096.1-201ENST00000489168 390 ntBASIC3.03□□□□□ -1.92
NUP88Q99567 LINC02233-201ENST00000513718 358 ntTSL 3 BASIC3.03□□□□□ -1.92
NUP88Q99567 RNU6-1198P-201ENST00000516904 67 ntBASIC3.03□□□□□ -1.92
NUP88Q99567 RN7SKP40-201ENST00000517211 242 ntBASIC3.03□□□□□ -1.92
NUP88Q99567 AC091144.1-201ENST00000519573 138 ntBASIC3.03□□□□□ -1.92
Retrieved 100 of 98,524 protein–RNA pairs in 143.3 ms