Protein–RNA interactions for Protein: Q15465

SHH, Sonic hedgehog protein, humanhuman

Predictions only

Length 462 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHHQ15465 AC055764.1-201ENST00000454526 473 ntTSL 3 BASIC1.71□□□□□ -2.14
SHHQ15465 AL441985.1-201ENST00000457727 251 ntBASIC1.71□□□□□ -2.14
SHHQ15465 SNRPFP3-201ENST00000457792 225 ntBASIC1.71□□□□□ -2.14
SHHQ15465 HMGB3P17-201ENST00000504195 649 ntBASIC1.71□□□□□ -2.14
SHHQ15465 FAM206BP-201ENST00000510179 541 ntBASIC1.71□□□□□ -2.14
SHHQ15465 RNU2-69P-201ENST00000516061 100 ntBASIC1.71□□□□□ -2.14
SHHQ15465 RNU6-120P-201ENST00000516077 103 ntBASIC1.71□□□□□ -2.14
SHHQ15465 AC124290.1-202ENST00000523342 387 ntTSL 3 BASIC1.71□□□□□ -2.14
SHHQ15465 AC011092.2-201ENST00000533659 586 ntTSL 1 (best) BASIC1.71□□□□□ -2.14
SHHQ15465 AC090592.1-203ENST00000533942 575 ntTSL 3 BASIC1.71□□□□□ -2.14
SHHQ15465 UBE2V2P2-201ENST00000587677 504 ntBASIC1.71□□□□□ -2.14
SHHQ15465 AC012594.1-269ENST00000600489 628 ntTSL 5 BASIC1.71□□□□□ -2.14
SHHQ15465 AL133255.1-201ENST00000606374 441 ntBASIC1.71□□□□□ -2.14
SHHQ15465 AL357078.3-201ENST00000607528 618 ntBASIC1.71□□□□□ -2.14
SHHQ15465 AC244093.3-201ENST00000615419 411 ntTSL 3 BASIC1.71□□□□□ -2.14
SHHQ15465 AC084781.2-201ENST00000615568 161 ntBASIC1.71□□□□□ -2.14
SHHQ15465 AC138058.1-201ENST00000620572 449 ntTSL 3 BASIC1.71□□□□□ -2.14
SHHQ15465 FRG1KP-201ENST00000623592 341 ntBASIC1.71□□□□□ -2.14
SHHQ15465 U6.114-201ENST00000636407 96 ntBASIC1.71□□□□□ -2.14
SHHQ15465 AC103993.1-201ENST00000521500 1584 ntTSL 5 BASIC1.71□□□□□ -2.14
SHHQ15465 KTN1-203ENST00000395309 4021 ntAPPRIS ALT2 TSL 5 BASIC1.71□□□□□ -2.14
SHHQ15465 ATF1-201ENST00000262053 2181 ntAPPRIS P1 TSL 1 (best) BASIC1.7□□□□□ -2.14
SHHQ15465 Y_RNA.67-201ENST00000362870 100 ntBASIC1.7□□□□□ -2.14
SHHQ15465 Y_RNA.142-201ENST00000363491 102 ntBASIC1.7□□□□□ -2.14
SHHQ15465 SNORA16B-201ENST00000364674 135 ntBASIC1.7□□□□□ -2.14
SHHQ15465 RNA5SP240-201ENST00000365355 128 ntBASIC1.7□□□□□ -2.14
SHHQ15465 RNU6-767P-201ENST00000384132 107 ntBASIC1.7□□□□□ -2.14
SHHQ15465 Y_RNA.573-201ENST00000384763 105 ntBASIC1.7□□□□□ -2.14
SHHQ15465 TRAJ40-201ENST00000390497 61 ntAPPRIS P1 BASIC1.7□□□□□ -2.14
SHHQ15465 RNU2-3P-201ENST00000410144 191 ntBASIC1.7□□□□□ -2.14
SHHQ15465 LINC02263-203ENST00000426240 515 ntTSL 5 BASIC1.7□□□□□ -2.14
SHHQ15465 CALM1P1-201ENST00000442082 433 ntBASIC1.7□□□□□ -2.14
SHHQ15465 TRAPPC2P3-201ENST00000443200 321 ntBASIC1.7□□□□□ -2.14
SHHQ15465 AL360091.2-201ENST00000446847 650 ntTSL 5 BASIC1.7□□□□□ -2.14
SHHQ15465 MYCBP2-AS1-203ENST00000450627 349 ntTSL 3 BASIC1.7□□□□□ -2.14
SHHQ15465 RNU6-953P-201ENST00000459154 107 ntBASIC1.7□□□□□ -2.14
SHHQ15465 RNU6-1208P-201ENST00000459588 107 ntBASIC1.7□□□□□ -2.14
SHHQ15465 RNU6-329P-201ENST00000459618 107 ntBASIC1.7□□□□□ -2.14
SHHQ15465 AC055731.1-201ENST00000474387 401 ntBASIC1.7□□□□□ -2.14
SHHQ15465 AC046134.1-201ENST00000514454 666 ntBASIC1.7□□□□□ -2.14
SHHQ15465 AC105417.1-201ENST00000514691 285 ntBASIC1.7□□□□□ -2.14
SHHQ15465 RNU2-19P-201ENST00000517288 84 ntBASIC1.7□□□□□ -2.14
SHHQ15465 AC105029.1-201ENST00000520250 669 ntBASIC1.7□□□□□ -2.14
SHHQ15465 UTP23-205ENST00000520733 369 ntTSL 3 BASIC1.7□□□□□ -2.14
SHHQ15465 AL137161.1-201ENST00000532231 390 ntBASIC1.7□□□□□ -2.14
SHHQ15465 CBX3P7-201ENST00000532876 502 ntBASIC1.7□□□□□ -2.14
SHHQ15465 LINC02293-201ENST00000548335 574 ntTSL 5 BASIC1.7□□□□□ -2.14
SHHQ15465 AC090115.3-201ENST00000553218 849 ntBASIC1.7□□□□□ -2.14
SHHQ15465 AC011712.1-201ENST00000588959 234 ntBASIC1.7□□□□□ -2.14
SHHQ15465 AL138963.2-201ENST00000605137 226 ntBASIC1.7□□□□□ -2.14
SHHQ15465 HTN1-205ENST00000610341 536 ntAPPRIS P1 TSL 1 (best) BASIC1.7□□□□□ -2.14
SHHQ15465 AL132765.2-201ENST00000610812 351 ntBASIC1.7□□□□□ -2.14
SHHQ15465 AC025253.1-201ENST00000613623 543 ntBASIC1.7□□□□□ -2.14
SHHQ15465 AL359697.1-201ENST00000624879 587 ntBASIC1.7□□□□□ -2.14
SHHQ15465 AC099654.10-201ENST00000640395 161 ntBASIC1.7□□□□□ -2.14
SHHQ15465 Y_RNA.61-201ENST00000362835 102 ntBASIC1.69□□□□□ -2.14
SHHQ15465 MIR95-201ENST00000385072 81 ntBASIC1.69□□□□□ -2.14
SHHQ15465 MIR517C-201ENST00000385103 95 ntBASIC1.69□□□□□ -2.14
SHHQ15465 MIR676-201ENST00000390702 67 ntBASIC1.69□□□□□ -2.14
SHHQ15465 RNU2-29P-201ENST00000410423 189 ntBASIC1.69□□□□□ -2.14
SHHQ15465 AC007314.1-201ENST00000414538 565 ntTSL 4 BASIC1.69□□□□□ -2.14
SHHQ15465 PGBD4P6-201ENST00000421501 610 ntBASIC1.69□□□□□ -2.14
SHHQ15465 BX510359.4-201ENST00000423750 193 ntBASIC1.69□□□□□ -2.14
SHHQ15465 RPS3AP52-201ENST00000435639 297 ntBASIC1.69□□□□□ -2.14
SHHQ15465 IFNA20P-201ENST00000436840 528 ntBASIC1.69□□□□□ -2.14
SHHQ15465 AC004383.1-201ENST00000438135 289 ntBASIC1.69□□□□□ -2.14
SHHQ15465 MTCO3P18-201ENST00000440206 761 ntBASIC1.69□□□□□ -2.14
SHHQ15465 MTND4LP16-201ENST00000440828 295 ntBASIC1.69□□□□□ -2.14
SHHQ15465 AL138921.2-201ENST00000443919 578 ntTSL 5 BASIC1.69□□□□□ -2.14
SHHQ15465 ATP5J2P3-201ENST00000451550 258 ntBASIC1.69□□□□□ -2.14
SHHQ15465 snoU109.2-201ENST00000459316 135 ntBASIC1.69□□□□□ -2.14
SHHQ15465 RN7SL274P-201ENST00000492268 272 ntBASIC1.69□□□□□ -2.14
SHHQ15465 ATP1B3-AS1-201ENST00000492725 376 ntTSL 5 BASIC1.69□□□□□ -2.14
SHHQ15465 SRP72-202ENST00000504757 745 ntTSL 2 BASIC1.69□□□□□ -2.14
SHHQ15465 Y_RNA.682-201ENST00000516457 100 ntBASIC1.69□□□□□ -2.14
SHHQ15465 SNORD60.2-201ENST00000516883 86 ntBASIC1.69□□□□□ -2.14
SHHQ15465 MTND4P7-201ENST00000523876 130 ntBASIC1.69□□□□□ -2.14
SHHQ15465 AC084851.1-201ENST00000529105 249 ntBASIC1.69□□□□□ -2.14
SHHQ15465 AP003174.2-201ENST00000544663 294 ntTSL 3 BASIC1.69□□□□□ -2.14
SHHQ15465 AL137100.2-201ENST00000555786 315 ntBASIC1.69□□□□□ -2.14
SHHQ15465 MIR4529-201ENST00000578110 78 ntBASIC1.69□□□□□ -2.14
SHHQ15465 RBBP8-210ENST00000581687 617 ntTSL 2 BASIC1.69□□□□□ -2.14
SHHQ15465 FGF7P1-201ENST00000582820 288 ntBASIC1.69□□□□□ -2.14
SHHQ15465 MIR5692C1-201ENST00000585309 91 ntBASIC1.69□□□□□ -2.14
SHHQ15465 AC009233.1-201ENST00000616477 371 ntBASIC1.69□□□□□ -2.14
SHHQ15465 RMST_7.1-201ENST00000621935 268 ntBASIC1.69□□□□□ -2.14
SHHQ15465 AL591030.1-201ENST00000626131 627 ntTSL 3 BASIC1.69□□□□□ -2.14
SHHQ15465 MTND4LP32-201ENST00000636111 270 ntBASIC1.69□□□□□ -2.14
SHHQ15465 CYLC2-202ENST00000487798 2053 ntAPPRIS P1 TSL 5 BASIC1.69□□□□□ -2.14
SHHQ15465 SLCO1B3-202ENST00000381545 2805 ntAPPRIS P1 TSL 2 BASIC1.68□□□□□ -2.14
SHHQ15465 Y_RNA.36-201ENST00000362602 112 ntBASIC1.68□□□□□ -2.14
SHHQ15465 RNU6-254P-201ENST00000363377 107 ntBASIC1.68□□□□□ -2.14
SHHQ15465 RNU6-1059P-201ENST00000363752 98 ntBASIC1.68□□□□□ -2.14
SHHQ15465 RNU6-45P-201ENST00000384471 107 ntBASIC1.68□□□□□ -2.14
SHHQ15465 RNU6-342P-201ENST00000384521 104 ntBASIC1.68□□□□□ -2.14
SHHQ15465 RNU6-306P-201ENST00000384617 107 ntBASIC1.68□□□□□ -2.14
SHHQ15465 MIR301A-201ENST00000385261 86 ntBASIC1.68□□□□□ -2.14
SHHQ15465 SUMO2P12-201ENST00000405924 140 ntBASIC1.68□□□□□ -2.14
SHHQ15465 MIR548F5-201ENST00000408421 86 ntBASIC1.68□□□□□ -2.14
SHHQ15465 RN7SKP101-201ENST00000411376 320 ntBASIC1.68□□□□□ -2.14
Retrieved 100 of 98,524 protein–RNA pairs in 100.3 ms