Protein–RNA interactions for Protein: Q9NXS3

KLHL28, Kelch-like protein 28, humanhuman

Predictions only

Length 571 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KLHL28Q9NXS3 GTF2H2C-212ENST00000512736 832 ntTSL 1 (best) BASIC1.44□□□□□ -2.18
KLHL28Q9NXS3 AP003171.1-201ENST00000532770 266 ntTSL 2 BASIC1.44□□□□□ -2.18
KLHL28Q9NXS3 AC087260.1-201ENST00000546118 401 ntTSL 5 BASIC1.44□□□□□ -2.18
KLHL28Q9NXS3 AC009558.1-201ENST00000561174 581 ntTSL 4 BASIC1.44□□□□□ -2.18
KLHL28Q9NXS3 AC126323.6-201ENST00000561701 451 ntTSL 3 BASIC1.44□□□□□ -2.18
KLHL28Q9NXS3 LINC01919-202ENST00000579506 384 ntTSL 3 BASIC1.44□□□□□ -2.18
KLHL28Q9NXS3 MIR4422-201ENST00000581938 83 ntBASIC1.44□□□□□ -2.18
KLHL28Q9NXS3 AC010620.1-201ENST00000601088 1102 ntBASIC1.44□□□□□ -2.18
KLHL28Q9NXS3 PRR13P7-201ENST00000605538 430 ntBASIC1.44□□□□□ -2.18
KLHL28Q9NXS3 AC002044.1-201ENST00000606707 158 ntBASIC1.44□□□□□ -2.18
KLHL28Q9NXS3 Y_RNA.77-201ENST00000362962 107 ntBASIC1.43□□□□□ -2.18
KLHL28Q9NXS3 Y_RNA.238-201ENST00000364441 102 ntBASIC1.43□□□□□ -2.18
KLHL28Q9NXS3 MIR517C-201ENST00000385103 95 ntBASIC1.43□□□□□ -2.18
KLHL28Q9NXS3 AC007098.1-201ENST00000420122 367 ntBASIC1.43□□□□□ -2.18
KLHL28Q9NXS3 SNRPEP8-201ENST00000442866 260 ntBASIC1.43□□□□□ -2.18
KLHL28Q9NXS3 AC015983.2-201ENST00000446053 472 ntTSL 3 BASIC1.43□□□□□ -2.18
KLHL28Q9NXS3 TPT1P7-201ENST00000458300 517 ntBASIC1.43□□□□□ -2.18
KLHL28Q9NXS3 SNORD53B-201ENST00000577887 78 ntBASIC1.43□□□□□ -2.18
KLHL28Q9NXS3 AC005154.1-222ENST00000579024 341 ntTSL 5 BASIC1.43□□□□□ -2.18
KLHL28Q9NXS3 MIR5583-1-201ENST00000580941 59 ntBASIC1.43□□□□□ -2.18
KLHL28Q9NXS3 AC005304.3-201ENST00000581533 511 ntTSL 3 BASIC1.43□□□□□ -2.18
KLHL28Q9NXS3 AL391646.1-201ENST00000603860 190 ntBASIC1.43□□□□□ -2.18
KLHL28Q9NXS3 AC109347.2-201ENST00000610220 349 ntBASIC1.43□□□□□ -2.18
KLHL28Q9NXS3 PCGEM1.1-201ENST00000613431 131 ntBASIC1.43□□□□□ -2.18
KLHL28Q9NXS3 AC090582.1-201ENST00000636321 199 ntBASIC1.43□□□□□ -2.18
KLHL28Q9NXS3 CFHR4-204ENST00000608469 1601 ntTSL 1 (best) BASIC1.43□□□□□ -2.18
KLHL28Q9NXS3 GLMN-201ENST00000370360 1995 ntAPPRIS P1 TSL 1 (best) BASIC1.43□□□□□ -2.18
KLHL28Q9NXS3 CENPQ-201ENST00000335783 1733 ntAPPRIS P1 TSL 1 (best) BASIC1.43□□□□□ -2.18
KLHL28Q9NXS3 U3.9-201ENST00000363823 204 ntBASIC1.42□□□□□ -2.18
KLHL28Q9NXS3 RNU6-606P-201ENST00000384721 111 ntBASIC1.42□□□□□ -2.18
KLHL28Q9NXS3 RNU1-78P-201ENST00000391248 165 ntBASIC1.42□□□□□ -2.18
KLHL28Q9NXS3 DEFB108C-201ENST00000400154 252 ntBASIC1.42□□□□□ -2.18
KLHL28Q9NXS3 MIR1304-201ENST00000408243 91 ntBASIC1.42□□□□□ -2.18
KLHL28Q9NXS3 ATP13A5-AS1-201ENST00000414634 476 ntTSL 3 BASIC1.42□□□□□ -2.18
KLHL28Q9NXS3 AP1B1P2-201ENST00000416196 106 ntBASIC1.42□□□□□ -2.18
KLHL28Q9NXS3 MTATP6P18-201ENST00000417994 673 ntBASIC1.42□□□□□ -2.18
KLHL28Q9NXS3 AC139712.2-201ENST00000424302 339 ntBASIC1.42□□□□□ -2.18
KLHL28Q9NXS3 MTCO1P44-201ENST00000441935 243 ntBASIC1.42□□□□□ -2.18
KLHL28Q9NXS3 SNRPG-205ENST00000449935 428 ntTSL 1 (best) BASIC1.42□□□□□ -2.18
KLHL28Q9NXS3 AL031274.1-201ENST00000450334 232 ntBASIC1.42□□□□□ -2.18
KLHL28Q9NXS3 RPS29P23-201ENST00000458635 123 ntBASIC1.42□□□□□ -2.18
KLHL28Q9NXS3 SCARNA18-201ENST00000459004 134 ntBASIC1.42□□□□□ -2.18
KLHL28Q9NXS3 AL163540.1-201ENST00000485382 386 ntBASIC1.42□□□□□ -2.18
KLHL28Q9NXS3 AC092944.1-205ENST00000494885 517 ntTSL 4 BASIC1.42□□□□□ -2.18
KLHL28Q9NXS3 AC008539.1-201ENST00000507653 482 ntTSL 3 BASIC1.42□□□□□ -2.18
KLHL28Q9NXS3 AK3P2-201ENST00000507976 429 ntBASIC1.42□□□□□ -2.18
KLHL28Q9NXS3 AC097473.1-201ENST00000508142 408 ntBASIC1.42□□□□□ -2.18
KLHL28Q9NXS3 AC079140.3-201ENST00000511111 550 ntBASIC1.42□□□□□ -2.18
KLHL28Q9NXS3 AC103996.1-201ENST00000555468 102 ntBASIC1.42□□□□□ -2.18
KLHL28Q9NXS3 MTATP6P3-201ENST00000581686 676 ntBASIC1.42□□□□□ -2.18
KLHL28Q9NXS3 AC078795.3-201ENST00000602913 472 ntBASIC1.42□□□□□ -2.18
KLHL28Q9NXS3 RN7SKP299-201ENST00000606679 301 ntBASIC1.42□□□□□ -2.18
KLHL28Q9NXS3 AL512598.1-201ENST00000610158 273 ntBASIC1.42□□□□□ -2.18
KLHL28Q9NXS3 AL807742.1-203ENST00000637444 759 ntTSL 5 BASIC1.42□□□□□ -2.18
KLHL28Q9NXS3 ASPN-202ENST00000375544 2470 ntAPPRIS P1 TSL 1 (best) BASIC1.42□□□□□ -2.18
KLHL28Q9NXS3 BRDT-206ENST00000402388 3125 ntAPPRIS P3 TSL 1 (best) BASIC1.42□□□□□ -2.18
KLHL28Q9NXS3 ANKRD36-208ENST00000639751 3090 ntTSL 5 BASIC1.41□□□□□ -2.18
KLHL28Q9NXS3 AC007370.2-201ENST00000506899 2694 ntTSL 5 BASIC1.41□□□□□ -2.18
KLHL28Q9NXS3 RNU1-42P-201ENST00000364033 160 ntBASIC1.41□□□□□ -2.18
KLHL28Q9NXS3 RNU6-266P-201ENST00000364225 107 ntBASIC1.41□□□□□ -2.18
KLHL28Q9NXS3 RNU6-827P-201ENST00000365553 106 ntBASIC1.41□□□□□ -2.18
KLHL28Q9NXS3 RNU6-438P-201ENST00000365561 103 ntBASIC1.41□□□□□ -2.18
KLHL28Q9NXS3 SNORA32.2-201ENST00000384049 122 ntBASIC1.41□□□□□ -2.18
KLHL28Q9NXS3 RNU6-296P-201ENST00000384608 107 ntBASIC1.41□□□□□ -2.18
KLHL28Q9NXS3 RNU2-41P-201ENST00000410991 178 ntBASIC1.41□□□□□ -2.18
KLHL28Q9NXS3 CDK8P2-201ENST00000415020 547 ntBASIC1.41□□□□□ -2.18
KLHL28Q9NXS3 AL121872.1-201ENST00000420327 281 ntTSL 5 BASIC1.41□□□□□ -2.18
KLHL28Q9NXS3 AL353193.1-201ENST00000421444 268 ntBASIC1.41□□□□□ -2.18
KLHL28Q9NXS3 MTCYBP8-201ENST00000422855 651 ntBASIC1.41□□□□□ -2.18
KLHL28Q9NXS3 AL513185.2-201ENST00000425543 193 ntBASIC1.41□□□□□ -2.18
KLHL28Q9NXS3 MS4A4E-203ENST00000425663 350 ntTSL 1 (best) BASIC1.41□□□□□ -2.18
KLHL28Q9NXS3 AC007547.1-201ENST00000462177 490 ntBASIC1.41□□□□□ -2.18
KLHL28Q9NXS3 AC016632.1-201ENST00000503994 196 ntBASIC1.41□□□□□ -2.18
KLHL28Q9NXS3 AP001001.1-201ENST00000532422 826 ntTSL 3 BASIC1.41□□□□□ -2.18
KLHL28Q9NXS3 AC009107.1-201ENST00000561923 330 ntTSL 3 BASIC1.41□□□□□ -2.18
KLHL28Q9NXS3 AC009754.1-201ENST00000566282 540 ntTSL 4 BASIC1.41□□□□□ -2.18
KLHL28Q9NXS3 AGGF1P4-201ENST00000568249 801 ntBASIC1.41□□□□□ -2.18
KLHL28Q9NXS3 MIR5094-201ENST00000578766 85 ntBASIC1.41□□□□□ -2.18
KLHL28Q9NXS3 MIR4781-201ENST00000585250 76 ntBASIC1.41□□□□□ -2.18
KLHL28Q9NXS3 AC068790.2-201ENST00000602601 557 ntBASIC1.41□□□□□ -2.18
KLHL28Q9NXS3 AL645939.4-201ENST00000604495 135 ntBASIC1.41□□□□□ -2.18
KLHL28Q9NXS3 AC008536.2-201ENST00000607284 349 ntBASIC1.41□□□□□ -2.18
KLHL28Q9NXS3 DLEU2_1.1-201ENST00000612089 120 ntBASIC1.41□□□□□ -2.18
KLHL28Q9NXS3 DLEU2_1.2-201ENST00000614667 120 ntBASIC1.41□□□□□ -2.18
KLHL28Q9NXS3 NCRUPAR_2.1-201ENST00000616308 99 ntBASIC1.41□□□□□ -2.18
KLHL28Q9NXS3 AL450472.1-202ENST00000637286 180 ntBASIC1.41□□□□□ -2.18
KLHL28Q9NXS3 MTND4P14-201ENST00000435799 1354 ntBASIC1.41□□□□□ -2.18
KLHL28Q9NXS3 HFM1-201ENST00000370425 4931 ntAPPRIS P1 TSL 1 (best) BASIC1.41□□□□□ -2.18
KLHL28Q9NXS3 VPS13A-206ENST00000376646 2262 ntTSL 5 BASIC1.41□□□□□ -2.18
KLHL28Q9NXS3 RNU6-552P-201ENST00000362869 119 ntBASIC1.4□□□□□ -2.19
KLHL28Q9NXS3 RNU6-1120P-201ENST00000362988 108 ntBASIC1.4□□□□□ -2.19
KLHL28Q9NXS3 Y_RNA.399-201ENST00000383955 105 ntBASIC1.4□□□□□ -2.19
KLHL28Q9NXS3 SNORD116-9-201ENST00000384000 95 ntBASIC1.4□□□□□ -2.19
KLHL28Q9NXS3 SNORD116-3-201ENST00000384287 95 ntBASIC1.4□□□□□ -2.19
KLHL28Q9NXS3 SNORD116-1-201ENST00000384335 95 ntBASIC1.4□□□□□ -2.19
KLHL28Q9NXS3 SNORD116-7-201ENST00000384404 95 ntBASIC1.4□□□□□ -2.19
KLHL28Q9NXS3 SNORD116-5-201ENST00000384462 95 ntBASIC1.4□□□□□ -2.19
KLHL28Q9NXS3 SNORA12.2-201ENST00000391040 156 ntBASIC1.4□□□□□ -2.19
KLHL28Q9NXS3 RNU6-903P-201ENST00000391270 109 ntBASIC1.4□□□□□ -2.19
KLHL28Q9NXS3 RNU2-29P-201ENST00000410423 189 ntBASIC1.4□□□□□ -2.19
Retrieved 100 of 98,524 protein–RNA pairs in 167.1 ms