Protein–RNA interactions for Protein: Q8N6Y0

USHBP1, Usher syndrome type-1C protein-binding protein 1, humanhuman

Predictions only

Length 703 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1Q8N6Y0 LINC02233-201ENST00000513718 358 ntTSL 3 BASIC3.86□□□□□ -1.79
USHBP1Q8N6Y0 SNORA25.14-201ENST00000516481 132 ntBASIC3.86□□□□□ -1.79
USHBP1Q8N6Y0 RNA5SP468-201ENST00000516782 93 ntBASIC3.86□□□□□ -1.79
USHBP1Q8N6Y0 AC104027.1-201ENST00000521887 300 ntBASIC3.86□□□□□ -1.79
USHBP1Q8N6Y0 AC092747.1-201ENST00000538920 351 ntTSL 5 BASIC3.86□□□□□ -1.79
USHBP1Q8N6Y0 CR383656.8-201ENST00000549046 145 ntBASIC3.86□□□□□ -1.79
USHBP1Q8N6Y0 AC016597.1-201ENST00000564893 528 ntTSL 4 BASIC3.86□□□□□ -1.79
USHBP1Q8N6Y0 LINC01900-203ENST00000585185 393 ntTSL 3 BASIC3.86□□□□□ -1.79
USHBP1Q8N6Y0 AC011461.1-201ENST00000592671 357 ntTSL 3 BASIC3.86□□□□□ -1.79
USHBP1Q8N6Y0 AC005296.1-201ENST00000616145 209 ntBASIC3.86□□□□□ -1.79
USHBP1Q8N6Y0 OR4C16-201ENST00000623907 933 ntAPPRIS P1 BASIC3.86□□□□□ -1.79
USHBP1Q8N6Y0 ZNF680-202ENST00000447137 2159 ntTSL 2 BASIC3.86□□□□□ -1.79
USHBP1Q8N6Y0 MGAT4C-211ENST00000621808 2582 ntAPPRIS P1 TSL 1 (best) BASIC3.86□□□□□ -1.79
USHBP1Q8N6Y0 OR13G1-202ENST00000642119 2568 ntAPPRIS P1 BASIC3.86□□□□□ -1.79
USHBP1Q8N6Y0 AP003122.5-201ENST00000527668 3766 ntBASIC3.86□□□□□ -1.79
USHBP1Q8N6Y0 AL021368.2-201ENST00000606125 5352 ntBASIC3.85□□□□□ -1.79
USHBP1Q8N6Y0 DCLRE1A-202ENST00000369305 4241 ntAPPRIS P1 TSL 5 BASIC3.85□□□□□ -1.79
USHBP1Q8N6Y0 MIR411-201ENST00000362239 96 ntBASIC3.85□□□□□ -1.79
USHBP1Q8N6Y0 RNU4-82P-201ENST00000362443 140 ntBASIC3.85□□□□□ -1.79
USHBP1Q8N6Y0 RNU6-774P-201ENST00000363238 107 ntBASIC3.85□□□□□ -1.79
USHBP1Q8N6Y0 SNORD6-201ENST00000365444 73 ntBASIC3.85□□□□□ -1.79
USHBP1Q8N6Y0 SNORD116-20-201ENST00000384529 92 ntBASIC3.85□□□□□ -1.79
USHBP1Q8N6Y0 HMGN2P30-201ENST00000423237 256 ntBASIC3.85□□□□□ -1.79
USHBP1Q8N6Y0 AL442638.1-201ENST00000443359 237 ntTSL 5 BASIC3.85□□□□□ -1.79
USHBP1Q8N6Y0 AC125238.1-201ENST00000448842 249 ntBASIC3.85□□□□□ -1.79
USHBP1Q8N6Y0 SSXP4-201ENST00000451349 245 ntBASIC3.85□□□□□ -1.79
USHBP1Q8N6Y0 RNU7-170P-201ENST00000459303 61 ntBASIC3.85□□□□□ -1.79
USHBP1Q8N6Y0 RPL21P104-201ENST00000464143 478 ntBASIC3.85□□□□□ -1.79
USHBP1Q8N6Y0 NDUFA6-201ENST00000470753 475 ntTSL 2 BASIC3.85□□□□□ -1.79
USHBP1Q8N6Y0 AF186996.7-201ENST00000492781 209 ntBASIC3.85□□□□□ -1.79
USHBP1Q8N6Y0 AC008892.1-201ENST00000511861 384 ntTSL 3 BASIC3.85□□□□□ -1.79
USHBP1Q8N6Y0 RNU2-31P-201ENST00000516954 155 ntBASIC3.85□□□□□ -1.79
USHBP1Q8N6Y0 AC083973.1-205ENST00000518994 601 ntTSL 2 BASIC3.85□□□□□ -1.79
USHBP1Q8N6Y0 AP002392.1-201ENST00000537692 208 ntBASIC3.85□□□□□ -1.79
USHBP1Q8N6Y0 AC020895.1-201ENST00000595362 272 ntBASIC3.85□□□□□ -1.79
USHBP1Q8N6Y0 AC037487.3-201ENST00000606668 112 ntBASIC3.85□□□□□ -1.79
USHBP1Q8N6Y0 AC048347.1-201ENST00000624621 427 ntBASIC3.85□□□□□ -1.79
USHBP1Q8N6Y0 AC073476.4-201ENST00000628409 72 ntBASIC3.85□□□□□ -1.79
USHBP1Q8N6Y0 CCDC178-213ENST00000583930 3094 ntAPPRIS ALT2 TSL 1 (best) BASIC3.85□□□□□ -1.79
USHBP1Q8N6Y0 HDX-201ENST00000297977 6200 ntAPPRIS P1 TSL 1 (best) BASIC3.85□□□□□ -1.79
USHBP1Q8N6Y0 PWAR6-201ENST00000552334 4618 ntBASIC3.85□□□□□ -1.79
USHBP1Q8N6Y0 PRRG1-202ENST00000449135 4481 ntAPPRIS P1 TSL 1 (best) BASIC3.84□□□□□ -1.79
USHBP1Q8N6Y0 PCAT4-201ENST00000504263 2091 ntTSL 1 (best) BASIC3.84□□□□□ -1.79
USHBP1Q8N6Y0 RNU6-50P-201ENST00000362356 103 ntBASIC3.84□□□□□ -1.79
USHBP1Q8N6Y0 Y_RNA.76-201ENST00000362931 109 ntBASIC3.84□□□□□ -1.79
USHBP1Q8N6Y0 RNU5B-2P-201ENST00000363036 113 ntBASIC3.84□□□□□ -1.79
USHBP1Q8N6Y0 RNU6-137P-201ENST00000363680 108 ntBASIC3.84□□□□□ -1.79
USHBP1Q8N6Y0 SNORD32A-201ENST00000364805 84 ntBASIC3.84□□□□□ -1.79
USHBP1Q8N6Y0 Y_RNA.504-201ENST00000384481 104 ntBASIC3.84□□□□□ -1.79
USHBP1Q8N6Y0 TRAJ48-201ENST00000390489 63 ntAPPRIS P1 BASIC3.84□□□□□ -1.79
USHBP1Q8N6Y0 AL359195.1-201ENST00000416657 339 ntTSL 3 BASIC3.84□□□□□ -1.79
USHBP1Q8N6Y0 AC074117.2-201ENST00000417130 397 ntBASIC3.84□□□□□ -1.79
USHBP1Q8N6Y0 YPEL5P1-201ENST00000419731 367 ntBASIC3.84□□□□□ -1.79
USHBP1Q8N6Y0 RPL23AP95-201ENST00000426806 265 ntBASIC3.84□□□□□ -1.79
USHBP1Q8N6Y0 AL135923.2-201ENST00000435444 501 ntTSL 2 BASIC3.84□□□□□ -1.79
USHBP1Q8N6Y0 AC096638.1-201ENST00000444678 216 ntBASIC3.84□□□□□ -1.79
USHBP1Q8N6Y0 HMGB3P8-201ENST00000449709 577 ntBASIC3.84□□□□□ -1.79
USHBP1Q8N6Y0 AL136164.1-201ENST00000456795 352 ntTSL 3 BASIC3.84□□□□□ -1.79
USHBP1Q8N6Y0 COX6CP14-201ENST00000469580 174 ntBASIC3.84□□□□□ -1.79
USHBP1Q8N6Y0 CFAP44-AS1-201ENST00000473329 396 ntTSL 2 BASIC3.84□□□□□ -1.79
USHBP1Q8N6Y0 AC091874.1-201ENST00000511402 339 ntBASIC3.84□□□□□ -1.79
USHBP1Q8N6Y0 AC107393.1-201ENST00000512403 346 ntBASIC3.84□□□□□ -1.79
USHBP1Q8N6Y0 RN7SKP49-201ENST00000516675 260 ntBASIC3.84□□□□□ -1.79
USHBP1Q8N6Y0 RNU6-1198P-201ENST00000516904 67 ntBASIC3.84□□□□□ -1.79
USHBP1Q8N6Y0 AK6P2-201ENST00000549020 471 ntBASIC3.84□□□□□ -1.79
USHBP1Q8N6Y0 MIR6134-201ENST00000617606 109 ntBASIC3.84□□□□□ -1.79
USHBP1Q8N6Y0 IGHVIII-44-202ENST00000636235 289 ntBASIC3.84□□□□□ -1.79
USHBP1Q8N6Y0 AC022336.2-201ENST00000568966 2538 ntBASIC3.84□□□□□ -1.8
USHBP1Q8N6Y0 MBNL1-218ENST00000485910 4257 ntTSL 1 (best) BASIC3.84□□□□□ -1.8
USHBP1Q8N6Y0 AC004944.1-201ENST00000517807 3059 ntBASIC3.84□□□□□ -1.8
USHBP1Q8N6Y0 OR4M1-202ENST00000641200 3493 ntAPPRIS P1 BASIC3.83□□□□□ -1.8
USHBP1Q8N6Y0 SNORD56.1-201ENST00000362913 68 ntBASIC3.83□□□□□ -1.8
USHBP1Q8N6Y0 RNU1-112P-201ENST00000364401 164 ntBASIC3.83□□□□□ -1.8
USHBP1Q8N6Y0 RNU6-281P-201ENST00000384212 103 ntBASIC3.83□□□□□ -1.8
USHBP1Q8N6Y0 SNORA19-201ENST00000384737 128 ntBASIC3.83□□□□□ -1.8
USHBP1Q8N6Y0 Y_RNA.569-201ENST00000384749 103 ntBASIC3.83□□□□□ -1.8
USHBP1Q8N6Y0 AC092660.1-201ENST00000420648 371 ntTSL 2 BASIC3.83□□□□□ -1.8
USHBP1Q8N6Y0 WARS2P1-201ENST00000429678 537 ntBASIC3.83□□□□□ -1.8
USHBP1Q8N6Y0 NDUFB4P6-201ENST00000436819 366 ntBASIC3.83□□□□□ -1.8
USHBP1Q8N6Y0 AC024022.1-202ENST00000508911 394 ntTSL 2 BASIC3.83□□□□□ -1.8
USHBP1Q8N6Y0 RNA5SP217-201ENST00000515959 91 ntBASIC3.83□□□□□ -1.8
USHBP1Q8N6Y0 RNU6-1212P-201ENST00000517023 104 ntBASIC3.83□□□□□ -1.8
USHBP1Q8N6Y0 AC024405.2-202ENST00000532731 184 ntBASIC3.83□□□□□ -1.8
USHBP1Q8N6Y0 AC025271.3-201ENST00000563031 255 ntTSL 5 BASIC3.83□□□□□ -1.8
USHBP1Q8N6Y0 Z83818.1-201ENST00000603584 150 ntBASIC3.83□□□□□ -1.8
USHBP1Q8N6Y0 AC013412.1-201ENST00000610687 192 ntBASIC3.83□□□□□ -1.8
USHBP1Q8N6Y0 AC012531.5-201ENST00000611375 151 ntBASIC3.83□□□□□ -1.8
USHBP1Q8N6Y0 NBPF20-201ENST00000369373 18760 ntAPPRIS ALT2 TSL 5 BASIC3.83□□□□□ -1.8
USHBP1Q8N6Y0 ZNF804B-202ENST00000611114 3968 ntTSL 5 BASIC3.83□□□□□ -1.8
USHBP1Q8N6Y0 LTN1-201ENST00000361371 7685 ntAPPRIS P1 TSL 1 (best) BASIC3.82□□□□□ -1.8
USHBP1Q8N6Y0 ZGRF1-212ENST00000612287 2176 ntTSL 1 (best) BASIC3.82□□□□□ -1.8
USHBP1Q8N6Y0 RNY4P28-201ENST00000365281 93 ntBASIC3.82□□□□□ -1.8
USHBP1Q8N6Y0 RNU6-21P-201ENST00000384710 107 ntBASIC3.82□□□□□ -1.8
USHBP1Q8N6Y0 MIR888-201ENST00000401186 77 ntBASIC3.82□□□□□ -1.8
USHBP1Q8N6Y0 Y_RNA.626-201ENST00000411288 95 ntBASIC3.82□□□□□ -1.8
USHBP1Q8N6Y0 RAB6C-AS1-202ENST00000433431 123 ntBASIC3.82□□□□□ -1.8
USHBP1Q8N6Y0 AC007969.2-201ENST00000441891 191 ntBASIC3.82□□□□□ -1.8
USHBP1Q8N6Y0 AL590422.1-201ENST00000451829 364 ntTSL 3 BASIC3.82□□□□□ -1.8
USHBP1Q8N6Y0 SNORD109B-201ENST00000458961 67 ntBASIC3.82□□□□□ -1.8
USHBP1Q8N6Y0 SNORD109A-201ENST00000459128 67 ntBASIC3.82□□□□□ -1.8
Retrieved 100 of 98,524 protein–RNA pairs in 106.8 ms