Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 AC104332.1-201ENST00000440471 797 ntBASIC-0.33□□□□□ -2.46
CUX1P39880 MTCO3P28-201ENST00000513351 515 ntBASIC-0.33□□□□□ -2.46
CUX1P39880 AC027338.1-201ENST00000514840 825 ntBASIC-0.33□□□□□ -2.46
CUX1P39880 RNA5SP135-201ENST00000517019 125 ntBASIC-0.33□□□□□ -2.46
CUX1P39880 AC011979.2-201ENST00000527568 352 ntBASIC-0.33□□□□□ -2.46
CUX1P39880 CCDC7-209ENST00000539197 581 ntAPPRIS ALT2 TSL 1 (best) BASIC-0.33□□□□□ -2.46
CUX1P39880 SNHG14-219ENST00000553134 470 ntTSL 2 BASIC-0.33□□□□□ -2.46
CUX1P39880 AL159153.1-201ENST00000619688 317 ntBASIC-0.33□□□□□ -2.46
CUX1P39880 AC104985.3-201ENST00000623479 597 ntBASIC-0.33□□□□□ -2.46
CUX1P39880 RNU6-252P-201ENST00000363232 107 ntBASIC-0.33□□□□□ -2.46
CUX1P39880 RNU6-673P-201ENST00000365084 104 ntBASIC-0.33□□□□□ -2.46
CUX1P39880 AL139421.1-201ENST00000423010 169 ntBASIC-0.33□□□□□ -2.46
CUX1P39880 LINC02263-203ENST00000426240 515 ntTSL 5 BASIC-0.33□□□□□ -2.46
CUX1P39880 LINC02264-201ENST00000442020 576 ntTSL 3 BASIC-0.33□□□□□ -2.46
CUX1P39880 OFD1P3Y-201ENST00000453312 783 ntBASIC-0.33□□□□□ -2.46
CUX1P39880 AC092264.1-201ENST00000456002 713 ntTSL 5 BASIC-0.33□□□□□ -2.46
CUX1P39880 LINC02462-201ENST00000503009 430 ntTSL 5 BASIC-0.33□□□□□ -2.46
CUX1P39880 NAF1-205ENST00000509434 385 ntTSL 3 BASIC-0.33□□□□□ -2.46
CUX1P39880 AC008852.1-201ENST00000510198 451 ntTSL 2 BASIC-0.33□□□□□ -2.46
CUX1P39880 SNORA25.12-201ENST00000516202 82 ntBASIC-0.33□□□□□ -2.46
CUX1P39880 RNU6-885P-201ENST00000516607 104 ntBASIC-0.33□□□□□ -2.46
CUX1P39880 AC103798.1-201ENST00000532562 376 ntTSL 2 BASIC-0.33□□□□□ -2.46
CUX1P39880 AL136317.1-201ENST00000612653 226 ntBASIC-0.33□□□□□ -2.46
CUX1P39880 RNU6-28P-201ENST00000362378 107 ntBASIC-0.34□□□□□ -2.46
CUX1P39880 SNORD114-5-201ENST00000362928 70 ntBASIC-0.34□□□□□ -2.46
CUX1P39880 RNA5SP128-201ENST00000365305 116 ntBASIC-0.34□□□□□ -2.46
CUX1P39880 FBXO11-203ENST00000405808 299 ntTSL 5 BASIC-0.34□□□□□ -2.46
CUX1P39880 BTF3P11-201ENST00000426582 477 ntBASIC-0.34□□□□□ -2.46
CUX1P39880 AL162725.1-201ENST00000435405 301 ntBASIC-0.34□□□□□ -2.46
CUX1P39880 SNRPEP8-201ENST00000442866 260 ntBASIC-0.34□□□□□ -2.46
CUX1P39880 KRTAP13-6P-201ENST00000508999 371 ntBASIC-0.34□□□□□ -2.46
CUX1P39880 RNU6-143P-201ENST00000516942 93 ntBASIC-0.34□□□□□ -2.46
CUX1P39880 MIR4742-201ENST00000581069 85 ntBASIC-0.34□□□□□ -2.46
CUX1P39880 AC104408.1-201ENST00000605241 170 ntBASIC-0.34□□□□□ -2.46
CUX1P39880 MIR8064-201ENST00000612863 90 ntBASIC-0.34□□□□□ -2.46
CUX1P39880 RNU6-212P-201ENST00000362642 104 ntBASIC-0.35□□□□□ -2.47
CUX1P39880 SNORA25.3-201ENST00000363205 127 ntBASIC-0.35□□□□□ -2.47
CUX1P39880 RNU4-27P-201ENST00000410889 139 ntBASIC-0.35□□□□□ -2.47
CUX1P39880 AC003985.1-201ENST00000414127 362 ntTSL 3 BASIC-0.35□□□□□ -2.47
CUX1P39880 ATP13A5-AS1-201ENST00000414634 476 ntTSL 3 BASIC-0.35□□□□□ -2.47
CUX1P39880 MTCO3P41-201ENST00000414801 328 ntBASIC-0.35□□□□□ -2.47
CUX1P39880 AC012368.2-201ENST00000423539 560 ntTSL 3 BASIC-0.35□□□□□ -2.47
CUX1P39880 RAC1P6-201ENST00000423911 575 ntBASIC-0.35□□□□□ -2.47
CUX1P39880 AC002542.1-201ENST00000440683 193 ntBASIC-0.35□□□□□ -2.47
CUX1P39880 AC093809.1-201ENST00000509155 340 ntBASIC-0.35□□□□□ -2.47
CUX1P39880 AC025465.4-201ENST00000513422 638 ntBASIC-0.35□□□□□ -2.47
CUX1P39880 SNORA40.12-201ENST00000516329 111 ntBASIC-0.35□□□□□ -2.47
CUX1P39880 RNU6-320P-201ENST00000516511 106 ntBASIC-0.35□□□□□ -2.47
CUX1P39880 SNORA76.2-201ENST00000517095 137 ntBASIC-0.35□□□□□ -2.47
CUX1P39880 AC025524.2-211ENST00000519990 1173 ntTSL 1 (best) BASIC-0.35□□□□□ -2.47
CUX1P39880 AC009712.1-201ENST00000564938 316 ntBASIC-0.35□□□□□ -2.47
CUX1P39880 MIR5695-201ENST00000579717 85 ntBASIC-0.35□□□□□ -2.47
CUX1P39880 MIR3136-201ENST00000583498 78 ntBASIC-0.35□□□□□ -2.47
CUX1P39880 AC008277.1-203ENST00000594921 1149 ntTSL 5 BASIC-0.35□□□□□ -2.47
CUX1P39880 BNIP3P30-201ENST00000601184 574 ntBASIC-0.35□□□□□ -2.47
CUX1P39880 AC064807.4-201ENST00000607201 407 ntBASIC-0.35□□□□□ -2.47
CUX1P39880 AC084824.4-201ENST00000620106 731 ntBASIC-0.35□□□□□ -2.47
CUX1P39880 CAPZA2-214ENST00000628758 525 ntTSL 5 BASIC-0.35□□□□□ -2.47
CUX1P39880 AC134980.1-208ENST00000640228 535 ntTSL 5 BASIC-0.35□□□□□ -2.47
CUX1P39880 SNORD115-41-201ENST00000363608 82 ntBASIC-0.36□□□□□ -2.47
CUX1P39880 RNU6-359P-201ENST00000365466 108 ntBASIC-0.36□□□□□ -2.47
CUX1P39880 RNU6-438P-201ENST00000365561 103 ntBASIC-0.36□□□□□ -2.47
CUX1P39880 MIR635-201ENST00000384830 98 ntBASIC-0.36□□□□□ -2.47
CUX1P39880 TRAJ41-201ENST00000390496 62 ntAPPRIS P1 BASIC-0.36□□□□□ -2.47
CUX1P39880 SNORA75.2-201ENST00000391138 150 ntBASIC-0.36□□□□□ -2.47
CUX1P39880 SNORA75.3-201ENST00000391231 150 ntBASIC-0.36□□□□□ -2.47
CUX1P39880 LINC01774-201ENST00000453569 595 ntTSL 2 BASIC-0.36□□□□□ -2.47
CUX1P39880 RPL39P39-201ENST00000455840 151 ntBASIC-0.36□□□□□ -2.47
CUX1P39880 RPS3AP17-201ENST00000472594 777 ntBASIC-0.36□□□□□ -2.47
CUX1P39880 AC092944.1-205ENST00000494885 517 ntTSL 4 BASIC-0.36□□□□□ -2.47
CUX1P39880 RNU6-1096P-201ENST00000517089 102 ntBASIC-0.36□□□□□ -2.47
CUX1P39880 AC009902.1-201ENST00000519351 183 ntBASIC-0.36□□□□□ -2.47
CUX1P39880 AC023157.2-201ENST00000540596 141 ntBASIC-0.36□□□□□ -2.47
CUX1P39880 AC138749.5-201ENST00000611461 208 ntBASIC-0.36□□□□□ -2.47
CUX1P39880 AC092656.1-203ENST00000624134 423 ntBASIC-0.36□□□□□ -2.47
CUX1P39880 MIR198-201ENST00000637333 62 ntBASIC-0.36□□□□□ -2.47
CUX1P39880 EVI2B-201ENST00000330927 1999 ntAPPRIS P1 TSL 1 (best) BASIC-0.36□□□□□ -2.47
CUX1P39880 RNY3P5-201ENST00000384127 102 ntBASIC-0.37□□□□□ -2.47
CUX1P39880 MIR643-201ENST00000385267 97 ntBASIC-0.37□□□□□ -2.47
CUX1P39880 AL133264.1-201ENST00000407157 562 ntBASIC-0.37□□□□□ -2.47
CUX1P39880 MTCO2P34-201ENST00000421994 607 ntBASIC-0.37□□□□□ -2.47
CUX1P39880 AL359771.1-201ENST00000441809 379 ntTSL 5 BASIC-0.37□□□□□ -2.47
CUX1P39880 MTCO3P45-201ENST00000443036 613 ntBASIC-0.37□□□□□ -2.47
CUX1P39880 MTCO1P19-201ENST00000443487 500 ntBASIC-0.37□□□□□ -2.47
CUX1P39880 ELOCP24-201ENST00000456370 334 ntBASIC-0.37□□□□□ -2.47
CUX1P39880 AC104629.1-201ENST00000494226 508 ntBASIC-0.37□□□□□ -2.47
CUX1P39880 AC145146.2-202ENST00000508118 326 ntTSL 3 BASIC-0.37□□□□□ -2.47
CUX1P39880 AC109810.1-201ENST00000534066 224 ntBASIC-0.37□□□□□ -2.47
CUX1P39880 TPRKBP2-201ENST00000565969 475 ntBASIC-0.37□□□□□ -2.47
CUX1P39880 AC103810.2-203ENST00000584959 631 ntTSL 5 BASIC-0.37□□□□□ -2.47
CUX1P39880 LINC02104-202ENST00000604954 599 ntTSL 3 BASIC-0.37□□□□□ -2.47
CUX1P39880 AC091946.2-201ENST00000606105 291 ntBASIC-0.37□□□□□ -2.47
CUX1P39880 AC008759.3-201ENST00000613300 508 ntBASIC-0.37□□□□□ -2.47
CUX1P39880 AC106754.2-201ENST00000623006 233 ntBASIC-0.37□□□□□ -2.47
CUX1P39880 RNU6-1066P-201ENST00000363573 105 ntBASIC-0.38□□□□□ -2.47
CUX1P39880 C20orf187-201ENST00000378252 446 ntTSL 2 BASIC-0.38□□□□□ -2.47
CUX1P39880 RNU6-432P-201ENST00000384196 109 ntBASIC-0.38□□□□□ -2.47
CUX1P39880 MIR601-201ENST00000385256 79 ntBASIC-0.38□□□□□ -2.47
CUX1P39880 UBE2V1P11-201ENST00000411559 285 ntBASIC-0.38□□□□□ -2.47
CUX1P39880 AL512271.1-201ENST00000439878 434 ntTSL 3 BASIC-0.38□□□□□ -2.47
Retrieved 100 of 98,524 protein–RNA pairs in 186 ms