Protein–RNA interactions for Protein: O75112

LDB3, LIM domain-binding protein 3, humanhuman

Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3O75112 HAUS6P2-201ENST00000433254 2404 ntBASIC2.56□□□□□ -2
LDB3O75112 OFD1P6Y-202ENST00000451061 2724 ntBASIC2.55□□□□□ -2
LDB3O75112 CHD1-201ENST00000284049 6457 ntAPPRIS P1 TSL 1 (best) BASIC2.55□□□□□ -2
LDB3O75112 Y_RNA.123-201ENST00000363338 102 ntBASIC2.55□□□□□ -2
LDB3O75112 Y_RNA.461-201ENST00000384263 103 ntBASIC2.55□□□□□ -2
LDB3O75112 Y_RNA.476-201ENST00000384347 108 ntBASIC2.55□□□□□ -2
LDB3O75112 MIR625-201ENST00000385047 85 ntBASIC2.55□□□□□ -2
LDB3O75112 TRAJ34-201ENST00000390503 58 ntAPPRIS P1 BASIC2.55□□□□□ -2
LDB3O75112 Y_RNA.592-201ENST00000410274 109 ntBASIC2.55□□□□□ -2
LDB3O75112 RNU2-38P-201ENST00000410856 79 ntBASIC2.55□□□□□ -2
LDB3O75112 RPL21P38-201ENST00000418090 167 ntBASIC2.55□□□□□ -2
LDB3O75112 AC012370.1-201ENST00000419244 530 ntTSL 3 BASIC2.55□□□□□ -2
LDB3O75112 AC112220.1-201ENST00000434628 355 ntBASIC2.55□□□□□ -2
LDB3O75112 AL136369.1-201ENST00000437825 244 ntTSL 5 BASIC2.55□□□□□ -2
LDB3O75112 TRAPPC2P8-201ENST00000440676 396 ntBASIC2.55□□□□□ -2
LDB3O75112 Z68323.1-201ENST00000450365 519 ntTSL 3 BASIC2.55□□□□□ -2
LDB3O75112 AC090525.1-201ENST00000479116 478 ntBASIC2.55□□□□□ -2
LDB3O75112 AC098869.1-201ENST00000481627 292 ntBASIC2.55□□□□□ -2
LDB3O75112 AC008869.1-201ENST00000510938 442 ntTSL 2 BASIC2.55□□□□□ -2
LDB3O75112 AC091874.1-201ENST00000511402 339 ntBASIC2.55□□□□□ -2
LDB3O75112 RNU6-408P-201ENST00000515910 100 ntBASIC2.55□□□□□ -2
LDB3O75112 SNORA25.11-201ENST00000515935 105 ntBASIC2.55□□□□□ -2
LDB3O75112 RNU5F-8P-201ENST00000515941 111 ntBASIC2.55□□□□□ -2
LDB3O75112 RNU6-56P-201ENST00000516986 93 ntBASIC2.55□□□□□ -2
LDB3O75112 RNU6-897P-201ENST00000517135 105 ntBASIC2.55□□□□□ -2
LDB3O75112 MCF2-208ENST00000519895 3346 ntAPPRIS ALT2 TSL 2 BASIC2.55□□□□□ -2
LDB3O75112 MRPS36P4-201ENST00000534436 298 ntBASIC2.55□□□□□ -2
LDB3O75112 AC126323.6-201ENST00000561701 451 ntTSL 3 BASIC2.55□□□□□ -2
LDB3O75112 ELOCP29-201ENST00000588193 334 ntBASIC2.55□□□□□ -2
LDB3O75112 AC005357.1-201ENST00000588399 301 ntBASIC2.55□□□□□ -2
LDB3O75112 VN1R91P-201ENST00000594377 169 ntBASIC2.55□□□□□ -2
LDB3O75112 BX546450.2-201ENST00000602419 435 ntTSL 5 BASIC2.55□□□□□ -2
LDB3O75112 AC016727.2-201ENST00000603988 621 ntBASIC2.55□□□□□ -2
LDB3O75112 AC019159.1-201ENST00000605094 187 ntBASIC2.55□□□□□ -2
LDB3O75112 AL442067.1-201ENST00000613261 223 ntBASIC2.55□□□□□ -2
LDB3O75112 AL159153.1-201ENST00000619688 317 ntBASIC2.55□□□□□ -2
LDB3O75112 MAPK10-266ENST00000641066 6555 ntBASIC2.55□□□□□ -2
LDB3O75112 CACNB4-238ENST00000636901 7706 ntTSL 5 BASIC2.55□□□□□ -2
LDB3O75112 AK9-203ENST00000368948 2478 ntTSL 5 BASIC2.54□□□□□ -2
LDB3O75112 SNORA68.1-201ENST00000364537 132 ntBASIC2.54□□□□□ -2
LDB3O75112 RNU6-843P-201ENST00000384454 104 ntBASIC2.54□□□□□ -2
LDB3O75112 RNU6-748P-201ENST00000384648 107 ntBASIC2.54□□□□□ -2
LDB3O75112 TRAV34-201ENST00000390461 349 ntAPPRIS P1 BASIC2.54□□□□□ -2
LDB3O75112 U3.26-201ENST00000391236 204 ntBASIC2.54□□□□□ -2
LDB3O75112 RNU6ATAC23P-201ENST00000408448 123 ntBASIC2.54□□□□□ -2
LDB3O75112 SNORD88.1-201ENST00000408684 91 ntBASIC2.54□□□□□ -2
LDB3O75112 RNA5SP21-201ENST00000410917 96 ntBASIC2.54□□□□□ -2
LDB3O75112 RNA5SP344-201ENST00000411081 104 ntBASIC2.54□□□□□ -2
LDB3O75112 RNU6-1245P-201ENST00000411130 106 ntBASIC2.54□□□□□ -2
LDB3O75112 AL513008.1-201ENST00000412701 161 ntTSL 5 BASIC2.54□□□□□ -2
LDB3O75112 LINC00428-201ENST00000415620 227 ntTSL 5 BASIC2.54□□□□□ -2
LDB3O75112 EIF4EP2-201ENST00000422816 654 ntBASIC2.54□□□□□ -2
LDB3O75112 FCF1P4-201ENST00000448326 183 ntBASIC2.54□□□□□ -2
LDB3O75112 AL441985.1-201ENST00000457727 251 ntBASIC2.54□□□□□ -2
LDB3O75112 AC107626.1-201ENST00000471084 183 ntBASIC2.54□□□□□ -2
LDB3O75112 AC010469.2-201ENST00000496412 480 ntBASIC2.54□□□□□ -2
LDB3O75112 AKIRIN2P1-201ENST00000505898 352 ntBASIC2.54□□□□□ -2
LDB3O75112 AC109927.1-202ENST00000511951 282 ntTSL 3 BASIC2.54□□□□□ -2
LDB3O75112 RNU6-1143P-201ENST00000516125 104 ntBASIC2.54□□□□□ -2
LDB3O75112 RNY3P15-201ENST00000516297 97 ntBASIC2.54□□□□□ -2
LDB3O75112 SCARNA11.3-201ENST00000517276 130 ntBASIC2.54□□□□□ -2
LDB3O75112 LINC02095-202ENST00000543512 323 ntTSL 3 BASIC2.54□□□□□ -2
LDB3O75112 PWRN1-209ENST00000568019 359 ntTSL 3 BASIC2.54□□□□□ -2
LDB3O75112 AL122017.1-202ENST00000570612 319 ntTSL 5 BASIC2.54□□□□□ -2
LDB3O75112 AC022809.1-201ENST00000579247 428 ntTSL 3 BASIC2.54□□□□□ -2
LDB3O75112 AC092070.3-201ENST00000596041 337 ntTSL 3 BASIC2.54□□□□□ -2
LDB3O75112 AL391813.1-201ENST00000603098 260 ntBASIC2.54□□□□□ -2
LDB3O75112 AC100812.1-201ENST00000607622 580 ntBASIC2.54□□□□□ -2
LDB3O75112 DLEU2_6.1-201ENST00000610536 112 ntBASIC2.54□□□□□ -2
LDB3O75112 KBTBD3-207ENST00000534815 3396 ntTSL 5 BASIC2.54□□□□□ -2
LDB3O75112 NOX4-202ENST00000343727 3347 ntTSL 2 BASIC2.54□□□□□ -2
LDB3O75112 AC026241.1-201ENST00000517873 2142 ntBASIC2.54□□□□□ -2
LDB3O75112 KCNIP4-IT1-201ENST00000627566 9848 ntBASIC2.54□□□□□ -2
LDB3O75112 SLC4A7-201ENST00000295736 7757 ntAPPRIS P3 TSL 1 (best) BASIC2.54□□□□□ -2
LDB3O75112 SMARCAD1-206ENST00000509418 2348 ntTSL 2 BASIC2.53□□□□□ -2
LDB3O75112 OR2J3-203ENST00000641960 3342 ntAPPRIS P1 BASIC2.53□□□□□ -2
LDB3O75112 Y_RNA.19-201ENST00000362462 99 ntBASIC2.53□□□□□ -2
LDB3O75112 SNORD56.1-201ENST00000362913 68 ntBASIC2.53□□□□□ -2
LDB3O75112 Y_RNA.405-201ENST00000383979 100 ntBASIC2.53□□□□□ -2
LDB3O75112 Y_RNA.451-201ENST00000384200 100 ntBASIC2.53□□□□□ -2
LDB3O75112 Y_RNA.477-201ENST00000384352 108 ntBASIC2.53□□□□□ -2
LDB3O75112 Y_RNA.524-201ENST00000384564 100 ntBASIC2.53□□□□□ -2
LDB3O75112 Y_RNA.561-201ENST00000384694 100 ntBASIC2.53□□□□□ -2
LDB3O75112 MIR215-201ENST00000384858 110 ntBASIC2.53□□□□□ -2
LDB3O75112 DEFB130A-201ENST00000400079 240 ntAPPRIS P1 TSL 1 (best) BASIC2.53□□□□□ -2
LDB3O75112 AC104332.2-201ENST00000429959 156 ntBASIC2.53□□□□□ -2
LDB3O75112 DEFB130B-201ENST00000437818 240 ntAPPRIS P1 TSL 1 (best) BASIC2.53□□□□□ -2
LDB3O75112 AC133865.1-201ENST00000438619 339 ntTSL 3 BASIC2.53□□□□□ -2
LDB3O75112 RPEP5-201ENST00000441137 268 ntBASIC2.53□□□□□ -2
LDB3O75112 AL138900.1-201ENST00000449345 399 ntTSL 3 BASIC2.53□□□□□ -2
LDB3O75112 LINC01399-202ENST00000458450 244 ntBASIC2.53□□□□□ -2
LDB3O75112 SNORD127-201ENST00000458892 86 ntBASIC2.53□□□□□ -2
LDB3O75112 AC117462.1-201ENST00000461186 554 ntTSL 4 BASIC2.53□□□□□ -2
LDB3O75112 AP001486.1-201ENST00000463339 476 ntBASIC2.53□□□□□ -2
LDB3O75112 AC103975.1-201ENST00000482506 483 ntBASIC2.53□□□□□ -2
LDB3O75112 RN7SL297P-201ENST00000483161 293 ntBASIC2.53□□□□□ -2
LDB3O75112 RPL30P10-201ENST00000488148 337 ntBASIC2.53□□□□□ -2
LDB3O75112 AC010420.1-201ENST00000515077 509 ntTSL 3 BASIC2.53□□□□□ -2
LDB3O75112 SCARNA17.1-201ENST00000516211 143 ntBASIC2.53□□□□□ -2
LDB3O75112 SCARNA17.2-201ENST00000516334 143 ntBASIC2.53□□□□□ -2
Retrieved 100 of 98,524 protein–RNA pairs in 101 ms