Protein–RNA interactions for Protein: O15551

CLDN3, Claudin-3, humanhuman

Predictions only

Length 220 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN3O15551 RPL21P111-201ENST00000418453 477 ntBASIC1.63□□□□□ -2.15
CLDN3O15551 AL121601.2-201ENST00000438019 707 ntBASIC1.63□□□□□ -2.15
CLDN3O15551 AC112492.4-201ENST00000456549 352 ntBASIC1.63□□□□□ -2.15
CLDN3O15551 TOMM22P6-201ENST00000465035 409 ntBASIC1.63□□□□□ -2.15
CLDN3O15551 AC023790.1-201ENST00000482174 347 ntBASIC1.63□□□□□ -2.15
CLDN3O15551 RNA5SP458-201ENST00000516188 119 ntBASIC1.63□□□□□ -2.15
CLDN3O15551 RNU6-970P-201ENST00000516312 107 ntBASIC1.63□□□□□ -2.15
CLDN3O15551 RNU6-1098P-201ENST00000516772 96 ntBASIC1.63□□□□□ -2.15
CLDN3O15551 AP003469.3-201ENST00000518090 473 ntTSL 3 BASIC1.63□□□□□ -2.15
CLDN3O15551 LINC01493-203ENST00000534756 509 ntTSL 3 BASIC1.63□□□□□ -2.15
CLDN3O15551 MDM2-233ENST00000545204 398 ntTSL 5 BASIC1.63□□□□□ -2.15
CLDN3O15551 LINC02301-203ENST00000555798 789 ntTSL 3 BASIC1.63□□□□□ -2.15
CLDN3O15551 SUB1P4-201ENST00000566062 339 ntBASIC1.63□□□□□ -2.15
CLDN3O15551 RBBP8-210ENST00000581687 617 ntTSL 2 BASIC1.63□□□□□ -2.15
CLDN3O15551 MIR8074-201ENST00000615081 81 ntBASIC1.63□□□□□ -2.15
CLDN3O15551 AC010722.1-201ENST00000622595 582 ntTSL 5 BASIC1.63□□□□□ -2.15
CLDN3O15551 AC078883.4-201ENST00000623218 367 ntBASIC1.63□□□□□ -2.15
CLDN3O15551 AC005609.4-201ENST00000625071 447 ntBASIC1.63□□□□□ -2.15
CLDN3O15551 FGF7-202ENST00000560270 1688 ntTSL 1 (best) BASIC1.63□□□□□ -2.15
CLDN3O15551 SKIL-202ENST00000413427 2702 ntTSL 1 (best) BASIC1.63□□□□□ -2.15
CLDN3O15551 XRCC4-202ENST00000338635 1579 ntAPPRIS P4 TSL 2 BASIC1.63□□□□□ -2.15
CLDN3O15551 MIPOL1-203ENST00000537471 5954 ntAPPRIS P1 TSL 5 BASIC1.63□□□□□ -2.15
CLDN3O15551 MIR320A-201ENST00000385302 82 ntBASIC1.62□□□□□ -2.15
CLDN3O15551 SNORD73A-201ENST00000386062 65 ntBASIC1.62□□□□□ -2.15
CLDN3O15551 RNA5SP219-201ENST00000390940 113 ntBASIC1.62□□□□□ -2.15
CLDN3O15551 AP000275.1-201ENST00000411943 390 ntBASIC1.62□□□□□ -2.15
CLDN3O15551 MS4A4E-203ENST00000425663 350 ntTSL 1 (best) BASIC1.62□□□□□ -2.15
CLDN3O15551 SNRPG-205ENST00000449935 428 ntTSL 1 (best) BASIC1.62□□□□□ -2.15
CLDN3O15551 RNU7-180P-201ENST00000459240 63 ntBASIC1.62□□□□□ -2.15
CLDN3O15551 RNU7-138P-201ENST00000459479 64 ntBASIC1.62□□□□□ -2.15
CLDN3O15551 AL355512.1-202ENST00000607952 209 ntTSL 5 BASIC1.62□□□□□ -2.15
CLDN3O15551 AC022513.1-201ENST00000624512 117 ntBASIC1.62□□□□□ -2.15
CLDN3O15551 AL450472.1-202ENST00000637286 180 ntBASIC1.62□□□□□ -2.15
CLDN3O15551 AC009541.1-201ENST00000438279 2662 ntBASIC1.61□□□□□ -2.15
CLDN3O15551 TRAV40-201ENST00000390467 317 ntAPPRIS P1 BASIC1.61□□□□□ -2.15
CLDN3O15551 SNORA12.2-201ENST00000391040 156 ntBASIC1.61□□□□□ -2.15
CLDN3O15551 AC079150.1-201ENST00000413043 383 ntTSL 3 BASIC1.61□□□□□ -2.15
CLDN3O15551 AL354695.1-201ENST00000427935 228 ntBASIC1.61□□□□□ -2.15
CLDN3O15551 AL512271.1-201ENST00000439878 434 ntTSL 3 BASIC1.61□□□□□ -2.15
CLDN3O15551 AC073415.1-201ENST00000449240 153 ntBASIC1.61□□□□□ -2.15
CLDN3O15551 AL355314.1-201ENST00000453639 316 ntTSL 5 BASIC1.61□□□□□ -2.15
CLDN3O15551 AC131571.1-202ENST00000454509 598 ntTSL 4 BASIC1.61□□□□□ -2.15
CLDN3O15551 AC005908.1-201ENST00000468701 347 ntBASIC1.61□□□□□ -2.15
CLDN3O15551 PLCH1-AS2-201ENST00000472913 408 ntTSL 2 BASIC1.61□□□□□ -2.15
CLDN3O15551 AL163973.1-201ENST00000484753 577 ntBASIC1.61□□□□□ -2.15
CLDN3O15551 AC021146.2-201ENST00000504736 556 ntBASIC1.61□□□□□ -2.15
CLDN3O15551 RPL39P5-202ENST00000512505 151 ntBASIC1.61□□□□□ -2.15
CLDN3O15551 Y_RNA.675-201ENST00000516389 149 ntBASIC1.61□□□□□ -2.15
CLDN3O15551 AC011257.1-201ENST00000519048 281 ntTSL 3 BASIC1.61□□□□□ -2.15
CLDN3O15551 AC007834.2-201ENST00000536310 343 ntBASIC1.61□□□□□ -2.15
CLDN3O15551 HMGB1P33-201ENST00000563485 527 ntBASIC1.61□□□□□ -2.15
CLDN3O15551 VN1R80P-201ENST00000597126 338 ntBASIC1.61□□□□□ -2.15
CLDN3O15551 AC007684.1-201ENST00000609671 477 ntBASIC1.61□□□□□ -2.15
CLDN3O15551 AL512598.1-201ENST00000610158 273 ntBASIC1.61□□□□□ -2.15
CLDN3O15551 AC083806.3-201ENST00000614016 455 ntBASIC1.61□□□□□ -2.15
CLDN3O15551 AP000648.3-201ENST00000623539 4507 ntBASIC1.61□□□□□ -2.15
CLDN3O15551 VPS13A-206ENST00000376646 2262 ntTSL 5 BASIC1.61□□□□□ -2.15
CLDN3O15551 TDRD15-202ENST00000622654 5805 ntAPPRIS P1 BASIC1.6□□□□□ -2.15
CLDN3O15551 RNU4-13P-201ENST00000364019 141 ntBASIC1.6□□□□□ -2.15
CLDN3O15551 Y_RNA.296-201ENST00000364930 108 ntBASIC1.6□□□□□ -2.15
CLDN3O15551 SNORD31B-201ENST00000364977 69 ntBASIC1.6□□□□□ -2.15
CLDN3O15551 Y_RNA.381-201ENST00000365666 102 ntBASIC1.6□□□□□ -2.15
CLDN3O15551 SNORD37.1-201ENST00000390968 65 ntBASIC1.6□□□□□ -2.15
CLDN3O15551 RNU6-174P-201ENST00000410406 106 ntBASIC1.6□□□□□ -2.15
CLDN3O15551 AC012306.1-201ENST00000423267 114 ntBASIC1.6□□□□□ -2.15
CLDN3O15551 MTCO3P46-201ENST00000425787 232 ntBASIC1.6□□□□□ -2.15
CLDN3O15551 MAMDC2-AS1-205ENST00000451488 317 ntTSL 3 BASIC1.6□□□□□ -2.15
CLDN3O15551 RPS3AP17-201ENST00000472594 777 ntBASIC1.6□□□□□ -2.15
CLDN3O15551 RPS23P5-201ENST00000495419 428 ntBASIC1.6□□□□□ -2.15
CLDN3O15551 HMGN1P13-201ENST00000505795 138 ntBASIC1.6□□□□□ -2.15
CLDN3O15551 AC025465.3-201ENST00000510570 311 ntBASIC1.6□□□□□ -2.15
CLDN3O15551 RNU4ATAC8P-201ENST00000516196 109 ntBASIC1.6□□□□□ -2.15
CLDN3O15551 AP001001.1-201ENST00000532422 826 ntTSL 3 BASIC1.6□□□□□ -2.15
CLDN3O15551 OSBPL9P5-201ENST00000542581 171 ntBASIC1.6□□□□□ -2.15
CLDN3O15551 AC026765.1-201ENST00000547876 435 ntTSL 3 BASIC1.6□□□□□ -2.15
CLDN3O15551 AC090115.3-201ENST00000553218 849 ntBASIC1.6□□□□□ -2.15
CLDN3O15551 AL391646.1-201ENST00000603860 190 ntBASIC1.6□□□□□ -2.15
CLDN3O15551 SCOC-AS1-203ENST00000609616 405 ntTSL 3 BASIC1.6□□□□□ -2.15
CLDN3O15551 HULC.1-201ENST00000612720 240 ntBASIC1.6□□□□□ -2.15
CLDN3O15551 AC008147.4-201ENST00000617570 1204 ntBASIC1.6□□□□□ -2.15
CLDN3O15551 AL136221.1-201ENST00000621449 509 ntBASIC1.6□□□□□ -2.15
CLDN3O15551 SNORA43.4-201ENST00000629559 138 ntBASIC1.6□□□□□ -2.15
CLDN3O15551 MIR340-201ENST00000362125 95 ntBASIC1.59□□□□□ -2.15
CLDN3O15551 RNU6-112P-201ENST00000363599 104 ntBASIC1.59□□□□□ -2.15
CLDN3O15551 RNU6-414P-201ENST00000363705 104 ntBASIC1.59□□□□□ -2.15
CLDN3O15551 RNU6-338P-201ENST00000383888 105 ntBASIC1.59□□□□□ -2.15
CLDN3O15551 AC000123.1-201ENST00000418215 516 ntTSL 5 BASIC1.59□□□□□ -2.15
CLDN3O15551 MTCO2P3-201ENST00000442543 421 ntBASIC1.59□□□□□ -2.15
CLDN3O15551 CCDC34P1-201ENST00000507441 517 ntBASIC1.59□□□□□ -2.15
CLDN3O15551 RN7SKP298-201ENST00000515950 94 ntBASIC1.59□□□□□ -2.15
CLDN3O15551 MTND3P12-201ENST00000559068 328 ntBASIC1.59□□□□□ -2.15
CLDN3O15551 Z99497.2-201ENST00000603634 310 ntBASIC1.59□□□□□ -2.15
CLDN3O15551 AC064807.4-201ENST00000607201 407 ntBASIC1.59□□□□□ -2.15
CLDN3O15551 MESTIT1_1.1-201ENST00000618871 140 ntBASIC1.59□□□□□ -2.15
CLDN3O15551 Z69908.1-201ENST00000622603 247 ntBASIC1.59□□□□□ -2.15
CLDN3O15551 AL159152.1-201ENST00000635019 2587 ntBASIC1.59□□□□□ -2.15
CLDN3O15551 MTND5P9-201ENST00000503854 1755 ntBASIC1.59□□□□□ -2.16
CLDN3O15551 AC242426.3-202ENST00000607149 2397 ntTSL 5 BASIC1.58□□□□□ -2.16
CLDN3O15551 AC008781.2-201ENST00000502205 2480 ntTSL 1 (best) BASIC1.58□□□□□ -2.16
CLDN3O15551 MIR378A-201ENST00000362177 66 ntBASIC1.58□□□□□ -2.16
Retrieved 100 of 98,524 protein–RNA pairs in 92.8 ms