Protein–RNA interactions for Protein: Q9Y2B5

VPS9D1, VPS9 domain-containing protein 1, humanhuman

Predictions only

Length 631 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1Q9Y2B5 RNU6-117P-201ENST00000365415 107 ntBASIC4.7□□□□□ -1.66
VPS9D1Q9Y2B5 SNORD116-22-201ENST00000384430 92 ntBASIC4.7□□□□□ -1.66
VPS9D1Q9Y2B5 MIR921-201ENST00000401133 56 ntBASIC4.7□□□□□ -1.66
VPS9D1Q9Y2B5 AL133475.1-201ENST00000404414 305 ntBASIC4.7□□□□□ -1.66
VPS9D1Q9Y2B5 AL161651.1-201ENST00000440882 223 ntBASIC4.7□□□□□ -1.66
VPS9D1Q9Y2B5 RBMY2UP-201ENST00000453474 324 ntBASIC4.7□□□□□ -1.66
VPS9D1Q9Y2B5 RN7SL807P-201ENST00000470923 297 ntBASIC4.7□□□□□ -1.66
VPS9D1Q9Y2B5 RNU6-1270P-201ENST00000517128 108 ntBASIC4.7□□□□□ -1.66
VPS9D1Q9Y2B5 MIR4646-201ENST00000580775 63 ntBASIC4.7□□□□□ -1.66
VPS9D1Q9Y2B5 MIR3163-201ENST00000581592 73 ntBASIC4.7□□□□□ -1.66
VPS9D1Q9Y2B5 JPX_2.1-201ENST00000614161 69 ntBASIC4.7□□□□□ -1.66
VPS9D1Q9Y2B5 MIR3199-2-201ENST00000636243 86 ntBASIC4.7□□□□□ -1.66
VPS9D1Q9Y2B5 CYP19A1-201ENST00000396402 4417 ntAPPRIS P1 TSL 1 (best) BASIC4.7□□□□□ -1.66
VPS9D1Q9Y2B5 DDX20-202ENST00000475700 4332 ntTSL 2 BASIC4.7□□□□□ -1.66
VPS9D1Q9Y2B5 PSMD1-213ENST00000619128 3161 ntAPPRIS ALT1 TSL 5 BASIC4.7□□□□□ -1.66
VPS9D1Q9Y2B5 POLR2B-203ENST00000431623 3666 ntTSL 2 BASIC4.7□□□□□ -1.66
VPS9D1Q9Y2B5 USP8-204ENST00000425032 3559 ntTSL 2 BASIC4.7□□□□□ -1.66
VPS9D1Q9Y2B5 CHL1-216ENST00000620033 7311 ntTSL 1 (best) BASIC4.7□□□□□ -1.66
VPS9D1Q9Y2B5 RAB23-201ENST00000317483 2546 ntAPPRIS P1 TSL 1 (best) BASIC4.7□□□□□ -1.66
VPS9D1Q9Y2B5 IQGAP2-203ENST00000396234 3376 ntTSL 1 (best) BASIC4.7□□□□□ -1.66
VPS9D1Q9Y2B5 RAD17-203ENST00000345306 2789 ntTSL 1 (best) BASIC4.7□□□□□ -1.66
VPS9D1Q9Y2B5 FANCI-202ENST00000310775 4743 ntAPPRIS ALT2 TSL 1 (best) BASIC4.7□□□□□ -1.66
VPS9D1Q9Y2B5 USP29-202ENST00000598197 3284 ntAPPRIS P1 BASIC4.7□□□□□ -1.66
VPS9D1Q9Y2B5 AP5M1-201ENST00000261558 11737 ntAPPRIS P1 TSL 1 (best) BASIC4.69□□□□□ -1.66
VPS9D1Q9Y2B5 RNU6-888P-201ENST00000363010 101 ntBASIC4.69□□□□□ -1.66
VPS9D1Q9Y2B5 SNORD24-201ENST00000383884 75 ntBASIC4.69□□□□□ -1.66
VPS9D1Q9Y2B5 AL645608.4-201ENST00000423619 154 ntBASIC4.69□□□□□ -1.66
VPS9D1Q9Y2B5 AL354863.1-202ENST00000431695 494 ntTSL 5 BASIC4.69□□□□□ -1.66
VPS9D1Q9Y2B5 RPL23AP52-201ENST00000439311 478 ntBASIC4.69□□□□□ -1.66
VPS9D1Q9Y2B5 SCARNA22-201ENST00000503991 125 ntBASIC4.69□□□□□ -1.66
VPS9D1Q9Y2B5 RNA5SP464-201ENST00000516251 108 ntBASIC4.69□□□□□ -1.66
VPS9D1Q9Y2B5 SUMO2P16-201ENST00000519475 264 ntBASIC4.69□□□□□ -1.66
VPS9D1Q9Y2B5 AC106785.1-201ENST00000565935 262 ntBASIC4.69□□□□□ -1.66
VPS9D1Q9Y2B5 AC018695.3-201ENST00000602617 408 ntTSL 2 BASIC4.69□□□□□ -1.66
VPS9D1Q9Y2B5 AC021443.1-201ENST00000604478 211 ntBASIC4.69□□□□□ -1.66
VPS9D1Q9Y2B5 AC005086.4-201ENST00000623065 213 ntBASIC4.69□□□□□ -1.66
VPS9D1Q9Y2B5 QSER1-201ENST00000399302 9335 ntAPPRIS P1 TSL 1 (best) BASIC4.69□□□□□ -1.66
VPS9D1Q9Y2B5 ABI3BP-201ENST00000284322 4498 ntAPPRIS P2 TSL 1 (best) BASIC4.69□□□□□ -1.66
VPS9D1Q9Y2B5 FAM35BP-202ENST00000497389 3337 ntBASIC4.69□□□□□ -1.66
VPS9D1Q9Y2B5 SKIL-201ENST00000259119 3057 ntAPPRIS P1 TSL 1 (best) BASIC4.69□□□□□ -1.66
VPS9D1Q9Y2B5 AL391684.1-201ENST00000416191 2998 ntTSL 5 BASIC4.69□□□□□ -1.66
VPS9D1Q9Y2B5 SDAD1P1-202ENST00000524156 2051 ntBASIC4.69□□□□□ -1.66
VPS9D1Q9Y2B5 AC100800.1-201ENST00000524252 2054 ntTSL 1 (best) BASIC4.69□□□□□ -1.66
VPS9D1Q9Y2B5 POSTN-210ENST00000541481 3113 ntTSL 1 (best) BASIC4.69□□□□□ -1.66
VPS9D1Q9Y2B5 OR8K3-204ENST00000641689 2380 ntAPPRIS P1 BASIC4.69□□□□□ -1.66
VPS9D1Q9Y2B5 SALL4P2-201ENST00000423288 2910 ntBASIC4.69□□□□□ -1.66
VPS9D1Q9Y2B5 NKRF-202ENST00000371527 3741 ntAPPRIS P1 TSL 1 (best) BASIC4.69□□□□□ -1.66
VPS9D1Q9Y2B5 ADGRL2-201ENST00000319517 5479 ntAPPRIS P2 TSL 1 (best) BASIC4.68□□□□□ -1.66
VPS9D1Q9Y2B5 SMAD5-212ENST00000545620 6937 ntAPPRIS P1 TSL 5 BASIC4.68□□□□□ -1.66
VPS9D1Q9Y2B5 RNU1-133P-201ENST00000364867 167 ntBASIC4.68□□□□□ -1.66
VPS9D1Q9Y2B5 Y_RNA.298-201ENST00000364960 107 ntBASIC4.68□□□□□ -1.66
VPS9D1Q9Y2B5 OBSCN-204ENST00000366707 26772 ntAPPRIS P1 TSL 5 BASIC4.68□□□□□ -1.66
VPS9D1Q9Y2B5 SNORD14D-201ENST00000384390 87 ntBASIC4.68□□□□□ -1.66
VPS9D1Q9Y2B5 SNORD77.3-201ENST00000391113 65 ntBASIC4.68□□□□□ -1.66
VPS9D1Q9Y2B5 AC096949.1-201ENST00000412047 152 ntBASIC4.68□□□□□ -1.66
VPS9D1Q9Y2B5 RPS23P1-201ENST00000491662 432 ntBASIC4.68□□□□□ -1.66
VPS9D1Q9Y2B5 AL078612.1-201ENST00000533009 150 ntTSL 5 BASIC4.68□□□□□ -1.66
VPS9D1Q9Y2B5 AC022081.1-201ENST00000537327 433 ntTSL 2 BASIC4.68□□□□□ -1.66
VPS9D1Q9Y2B5 AC095350.2-201ENST00000544034 201 ntTSL 5 BASIC4.68□□□□□ -1.66
VPS9D1Q9Y2B5 AC007598.1-202ENST00000561528 435 ntTSL 3 BASIC4.68□□□□□ -1.66
VPS9D1Q9Y2B5 L34079.2-201ENST00000597119 561 ntTSL 3 BASIC4.68□□□□□ -1.66
VPS9D1Q9Y2B5 U6.73-201ENST00000619194 103 ntBASIC4.68□□□□□ -1.66
VPS9D1Q9Y2B5 GHR-202ENST00000357703 4316 ntTSL 5 BASIC4.68□□□□□ -1.66
VPS9D1Q9Y2B5 ACSM3-201ENST00000289416 2845 ntAPPRIS P1 TSL 1 (best) BASIC4.68□□□□□ -1.66
VPS9D1Q9Y2B5 ANKRD30A-202ENST00000374660 4762 ntAPPRIS ALT2 TSL 5 BASIC4.68□□□□□ -1.66
VPS9D1Q9Y2B5 ADGRL2-203ENST00000370713 5382 ntTSL 1 (best) BASIC4.68□□□□□ -1.66
VPS9D1Q9Y2B5 PIKFYVE-201ENST00000264380 9901 ntAPPRIS P1 TSL 1 (best) BASIC4.67□□□□□ -1.66
VPS9D1Q9Y2B5 MME-211ENST00000492661 2854 ntAPPRIS P1 TSL 2 BASIC4.67□□□□□ -1.66
VPS9D1Q9Y2B5 PPP1R9A-202ENST00000340694 9689 ntAPPRIS P1 TSL 5 BASIC4.67□□□□□ -1.66
VPS9D1Q9Y2B5 FOXP2-220ENST00000634411 4065 ntTSL 5 BASIC4.67□□□□□ -1.66
VPS9D1Q9Y2B5 ASB5-201ENST00000296525 3031 ntAPPRIS P1 TSL 1 (best) BASIC4.67□□□□□ -1.66
VPS9D1Q9Y2B5 SNORD115-13-201ENST00000363358 82 ntBASIC4.67□□□□□ -1.66
VPS9D1Q9Y2B5 SNORD115-16-201ENST00000363887 82 ntBASIC4.67□□□□□ -1.66
VPS9D1Q9Y2B5 SNORD115-1-201ENST00000364961 82 ntBASIC4.67□□□□□ -1.66
VPS9D1Q9Y2B5 SNORA56-201ENST00000383966 129 ntBASIC4.67□□□□□ -1.66
VPS9D1Q9Y2B5 Y_RNA.426-201ENST00000384068 113 ntBASIC4.67□□□□□ -1.66
VPS9D1Q9Y2B5 RNU1-82P-201ENST00000390851 165 ntBASIC4.67□□□□□ -1.66
VPS9D1Q9Y2B5 RNU6-938P-201ENST00000411285 103 ntBASIC4.67□□□□□ -1.66
VPS9D1Q9Y2B5 AC004941.2-201ENST00000427009 228 ntBASIC4.67□□□□□ -1.66
VPS9D1Q9Y2B5 RPS4XP11-201ENST00000446897 772 ntBASIC4.67□□□□□ -1.66
VPS9D1Q9Y2B5 IFNWP4-201ENST00000453148 294 ntBASIC4.67□□□□□ -1.66
VPS9D1Q9Y2B5 AC109329.2-201ENST00000519658 482 ntBASIC4.67□□□□□ -1.66
VPS9D1Q9Y2B5 AC026992.1-202ENST00000558454 421 ntTSL 3 BASIC4.67□□□□□ -1.66
VPS9D1Q9Y2B5 RPL23AP97-201ENST00000568955 471 ntBASIC4.67□□□□□ -1.66
VPS9D1Q9Y2B5 MIR3667-201ENST00000581025 74 ntBASIC4.67□□□□□ -1.66
VPS9D1Q9Y2B5 AC024220.1-201ENST00000603675 484 ntBASIC4.67□□□□□ -1.66
VPS9D1Q9Y2B5 RNU6-91P-201ENST00000607774 107 ntBASIC4.67□□□□□ -1.66
VPS9D1Q9Y2B5 FAM25E-202ENST00000608562 189 ntBASIC4.67□□□□□ -1.66
VPS9D1Q9Y2B5 OSBPL1A-217ENST00000638614 84 ntTSL 5 BASIC4.67□□□□□ -1.66
VPS9D1Q9Y2B5 INPP4B-215ENST00000509777 4334 ntTSL 5 BASIC4.67□□□□□ -1.66
VPS9D1Q9Y2B5 STEAP2-203ENST00000394622 6612 ntAPPRIS P1 TSL 1 (best) BASIC4.67□□□□□ -1.66
VPS9D1Q9Y2B5 TTC21B-AS1-201ENST00000440322 2260 ntTSL 4 BASIC4.67□□□□□ -1.66
VPS9D1Q9Y2B5 AC026241.1-201ENST00000517873 2142 ntBASIC4.67□□□□□ -1.66
VPS9D1Q9Y2B5 SLC30A6-205ENST00000435660 4776 ntTSL 1 (best) BASIC4.67□□□□□ -1.66
VPS9D1Q9Y2B5 AC092435.4-201ENST00000623012 4159 ntBASIC4.67□□□□□ -1.66
VPS9D1Q9Y2B5 ZNF560-201ENST00000301480 2654 ntAPPRIS P1 TSL 1 (best) BASIC4.67□□□□□ -1.66
VPS9D1Q9Y2B5 C12orf45-204ENST00000552951 23529 ntAPPRIS P1 TSL 1 (best) BASIC4.67□□□□□ -1.66
VPS9D1Q9Y2B5 ZNF28-204ENST00000457749 4556 ntAPPRIS P1 TSL 1 (best) BASIC4.67□□□□□ -1.66
VPS9D1Q9Y2B5 C1orf112-202ENST00000359326 4002 ntAPPRIS P3 TSL 1 (best) BASIC4.66□□□□□ -1.66
VPS9D1Q9Y2B5 CASK-207ENST00000421587 8204 ntAPPRIS ALT2 TSL 1 (best) BASIC4.66□□□□□ -1.66
Retrieved 100 of 98,524 protein–RNA pairs in 103.2 ms