Protein–RNA interactions for Protein: Q9NQT5

EXOSC3, Exosome complex component RRP40, humanhuman

Known RBP Predictions only

Length 275 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
EXOSC3Q9NQT5 AC090517.2-201ENST00000614966 680 ntBASIC1.78□□□□□ -2.12
EXOSC3Q9NQT5 AC010722.1-201ENST00000622595 582 ntTSL 5 BASIC1.78□□□□□ -2.12
EXOSC3Q9NQT5 AC090617.10-201ENST00000624308 134 ntBASIC1.78□□□□□ -2.12
EXOSC3Q9NQT5 MIR3688-2-201ENST00000636963 87 ntBASIC1.78□□□□□ -2.12
EXOSC3Q9NQT5 AC073869.6-201ENST00000640656 341 ntBASIC1.78□□□□□ -2.12
EXOSC3Q9NQT5 SLITRK6-201ENST00000400286 4318 ntAPPRIS P1 TSL 1 (best) BASIC1.78□□□□□ -2.12
EXOSC3Q9NQT5 CLLU1-201ENST00000378485 3897 ntAPPRIS P1 TSL 1 (best) BASIC1.77□□□□□ -2.13
EXOSC3Q9NQT5 AC092268.1-201ENST00000342691 405 ntBASIC1.77□□□□□ -2.13
EXOSC3Q9NQT5 RNU6-227P-201ENST00000362865 103 ntBASIC1.77□□□□□ -2.13
EXOSC3Q9NQT5 Y_RNA.453-201ENST00000384223 109 ntBASIC1.77□□□□□ -2.13
EXOSC3Q9NQT5 VN1R36P-201ENST00000414936 291 ntBASIC1.77□□□□□ -2.13
EXOSC3Q9NQT5 SNRPEP10-201ENST00000420249 274 ntBASIC1.77□□□□□ -2.13
EXOSC3Q9NQT5 AC005482.1-201ENST00000420758 575 ntTSL 4 BASIC1.77□□□□□ -2.13
EXOSC3Q9NQT5 AL358234.1-201ENST00000421132 273 ntTSL 5 BASIC1.77□□□□□ -2.13
EXOSC3Q9NQT5 MTND1P34-201ENST00000438556 671 ntBASIC1.77□□□□□ -2.13
EXOSC3Q9NQT5 AC110995.1-201ENST00000444185 628 ntTSL 3 BASIC1.77□□□□□ -2.13
EXOSC3Q9NQT5 LINC01628-201ENST00000444266 397 ntTSL 2 BASIC1.77□□□□□ -2.13
EXOSC3Q9NQT5 AL137159.1-201ENST00000452808 512 ntBASIC1.77□□□□□ -2.13
EXOSC3Q9NQT5 PRELID3BP1-201ENST00000457142 540 ntBASIC1.77□□□□□ -2.13
EXOSC3Q9NQT5 RNU7-66P-201ENST00000459469 62 ntBASIC1.77□□□□□ -2.13
EXOSC3Q9NQT5 RPS27P21-201ENST00000486977 252 ntBASIC1.77□□□□□ -2.13
EXOSC3Q9NQT5 RN7SL274P-201ENST00000492268 272 ntBASIC1.77□□□□□ -2.13
EXOSC3Q9NQT5 AC116563.1-201ENST00000505454 396 ntTSL 3 BASIC1.77□□□□□ -2.13
EXOSC3Q9NQT5 RNU6-991P-201ENST00000516168 107 ntBASIC1.77□□□□□ -2.13
EXOSC3Q9NQT5 AC018630.3-201ENST00000542637 96 ntBASIC1.77□□□□□ -2.13
EXOSC3Q9NQT5 AC023796.2-201ENST00000545410 451 ntTSL 3 BASIC1.77□□□□□ -2.13
EXOSC3Q9NQT5 AC026371.1-201ENST00000551867 419 ntBASIC1.77□□□□□ -2.13
EXOSC3Q9NQT5 SCOCP1-201ENST00000554676 349 ntBASIC1.77□□□□□ -2.13
EXOSC3Q9NQT5 AC007347.1-201ENST00000563879 281 ntTSL 3 BASIC1.77□□□□□ -2.13
EXOSC3Q9NQT5 AC087463.2-201ENST00000565943 472 ntTSL 3 BASIC1.77□□□□□ -2.13
EXOSC3Q9NQT5 SNRPGP17-201ENST00000603780 214 ntBASIC1.77□□□□□ -2.13
EXOSC3Q9NQT5 Z98751.3-201ENST00000604447 521 ntBASIC1.77□□□□□ -2.13
EXOSC3Q9NQT5 AL356157.2-201ENST00000605122 111 ntBASIC1.77□□□□□ -2.13
EXOSC3Q9NQT5 AC091965.1-202ENST00000607662 397 ntTSL 3 BASIC1.77□□□□□ -2.13
EXOSC3Q9NQT5 AC100810.6-201ENST00000638068 285 ntBASIC1.77□□□□□ -2.13
EXOSC3Q9NQT5 SEMG1-201ENST00000372781 1662 ntAPPRIS P1 TSL 1 (best) BASIC1.77□□□□□ -2.13
EXOSC3Q9NQT5 XRCC4-205ENST00000511817 1636 ntAPPRIS P4 TSL 1 (best) BASIC1.77□□□□□ -2.13
EXOSC3Q9NQT5 AC027514.1-201ENST00000588561 1603 ntBASIC1.77□□□□□ -2.13
EXOSC3Q9NQT5 ZCCHC10-202ENST00000355372 2160 ntAPPRIS ALT2 TSL 2 BASIC1.76□□□□□ -2.13
EXOSC3Q9NQT5 PYGO1-201ENST00000302000 8488 ntTSL 1 (best) BASIC1.76□□□□□ -2.13
EXOSC3Q9NQT5 NEDD1-204ENST00000457368 3162 ntTSL 2 BASIC1.76□□□□□ -2.13
EXOSC3Q9NQT5 Y_RNA.6-201ENST00000362350 114 ntBASIC1.76□□□□□ -2.13
EXOSC3Q9NQT5 SNORD113-7-201ENST00000363762 77 ntBASIC1.76□□□□□ -2.13
EXOSC3Q9NQT5 SNORD32B-201ENST00000364460 84 ntBASIC1.76□□□□□ -2.13
EXOSC3Q9NQT5 RNU4-56P-201ENST00000364700 142 ntBASIC1.76□□□□□ -2.13
EXOSC3Q9NQT5 GSTA3-202ENST00000370968 775 ntTSL 1 (best) BASIC1.76□□□□□ -2.13
EXOSC3Q9NQT5 DEFB125-201ENST00000382410 587 ntAPPRIS P1 TSL 1 (best) BASIC1.76□□□□□ -2.13
EXOSC3Q9NQT5 RNU6-611P-201ENST00000384276 104 ntBASIC1.76□□□□□ -2.13
EXOSC3Q9NQT5 MIR23A-201ENST00000385245 73 ntBASIC1.76□□□□□ -2.13
EXOSC3Q9NQT5 SNORA26.3-201ENST00000391119 136 ntBASIC1.76□□□□□ -2.13
EXOSC3Q9NQT5 HMGN2P39-201ENST00000398005 273 ntBASIC1.76□□□□□ -2.13
EXOSC3Q9NQT5 MIR1262-201ENST00000408276 93 ntBASIC1.76□□□□□ -2.13
EXOSC3Q9NQT5 AL590632.1-201ENST00000424289 371 ntBASIC1.76□□□□□ -2.13
EXOSC3Q9NQT5 UBE2V1P4-201ENST00000425374 344 ntBASIC1.76□□□□□ -2.13
EXOSC3Q9NQT5 UBE2V1P8-201ENST00000437166 265 ntBASIC1.76□□□□□ -2.13
EXOSC3Q9NQT5 MTCO3P18-201ENST00000440206 761 ntBASIC1.76□□□□□ -2.13
EXOSC3Q9NQT5 AL360091.2-201ENST00000446847 650 ntTSL 5 BASIC1.76□□□□□ -2.13
EXOSC3Q9NQT5 AC055764.1-201ENST00000454526 473 ntTSL 3 BASIC1.76□□□□□ -2.13
EXOSC3Q9NQT5 NDUFAF4P4-201ENST00000454883 502 ntBASIC1.76□□□□□ -2.13
EXOSC3Q9NQT5 RNU7-187P-201ENST00000458985 68 ntBASIC1.76□□□□□ -2.13
EXOSC3Q9NQT5 U8.21-201ENST00000459536 136 ntBASIC1.76□□□□□ -2.13
EXOSC3Q9NQT5 AC107032.1-201ENST00000485945 480 ntBASIC1.76□□□□□ -2.13
EXOSC3Q9NQT5 AC104564.1-201ENST00000493028 407 ntBASIC1.76□□□□□ -2.13
EXOSC3Q9NQT5 FAM206BP-201ENST00000510179 541 ntBASIC1.76□□□□□ -2.13
EXOSC3Q9NQT5 AC011352.1-201ENST00000512300 793 ntBASIC1.76□□□□□ -2.13
EXOSC3Q9NQT5 RNA5SP137-201ENST00000516833 135 ntBASIC1.76□□□□□ -2.13
EXOSC3Q9NQT5 AC023906.2-201ENST00000558343 462 ntTSL 3 BASIC1.76□□□□□ -2.13
EXOSC3Q9NQT5 AC109446.1-201ENST00000566172 220 ntBASIC1.76□□□□□ -2.13
EXOSC3Q9NQT5 EAF1-AS1-207ENST00000599742 772 ntTSL 5 BASIC1.76□□□□□ -2.13
EXOSC3Q9NQT5 AC146944.4-201ENST00000602697 718 ntBASIC1.76□□□□□ -2.13
EXOSC3Q9NQT5 AC012493.3-201ENST00000604494 112 ntBASIC1.76□□□□□ -2.13
EXOSC3Q9NQT5 C16orf97-206ENST00000622950 415 ntTSL 2 BASIC1.76□□□□□ -2.13
EXOSC3Q9NQT5 MIR3662-201ENST00000637030 95 ntBASIC1.76□□□□□ -2.13
EXOSC3Q9NQT5 PARPBP-201ENST00000327680 3014 ntAPPRIS P1 TSL 2 BASIC1.76□□□□□ -2.13
EXOSC3Q9NQT5 ZNF644-212ENST00000621077 2056 ntTSL 5 BASIC1.76□□□□□ -2.13
EXOSC3Q9NQT5 U8.2-201ENST00000363156 134 ntBASIC1.75□□□□□ -2.13
EXOSC3Q9NQT5 Y_RNA.123-201ENST00000363338 102 ntBASIC1.75□□□□□ -2.13
EXOSC3Q9NQT5 RNU6-378P-201ENST00000384324 107 ntBASIC1.75□□□□□ -2.13
EXOSC3Q9NQT5 Y_RNA.530-201ENST00000384587 101 ntBASIC1.75□□□□□ -2.13
EXOSC3Q9NQT5 Y_RNA.573-201ENST00000384763 105 ntBASIC1.75□□□□□ -2.13
EXOSC3Q9NQT5 MIR521-1-201ENST00000384902 87 ntBASIC1.75□□□□□ -2.13
EXOSC3Q9NQT5 DEFB110-202ENST00000393660 189 ntAPPRIS ALT2 TSL 1 (best) BASIC1.75□□□□□ -2.13
EXOSC3Q9NQT5 MIR1294-201ENST00000408503 142 ntBASIC1.75□□□□□ -2.13
EXOSC3Q9NQT5 CBX3P6-201ENST00000430257 527 ntBASIC1.75□□□□□ -2.13
EXOSC3Q9NQT5 USP9YP28-201ENST00000435142 589 ntBASIC1.75□□□□□ -2.13
EXOSC3Q9NQT5 LINC01201-202ENST00000451431 401 ntTSL 3 BASIC1.75□□□□□ -2.13
EXOSC3Q9NQT5 snoU13.6-201ENST00000458785 104 ntBASIC1.75□□□□□ -2.13
EXOSC3Q9NQT5 AC007547.1-201ENST00000462177 490 ntBASIC1.75□□□□□ -2.13
EXOSC3Q9NQT5 AC021146.2-201ENST00000504736 556 ntBASIC1.75□□□□□ -2.13
EXOSC3Q9NQT5 AC110799.1-201ENST00000509098 449 ntTSL 3 BASIC1.75□□□□□ -2.13
EXOSC3Q9NQT5 AC010457.1-201ENST00000510469 458 ntTSL 3 BASIC1.75□□□□□ -2.13
EXOSC3Q9NQT5 MTND1P5-201ENST00000517906 940 ntBASIC1.75□□□□□ -2.13
EXOSC3Q9NQT5 LINC02398-201ENST00000536666 431 ntTSL 3 BASIC1.75□□□□□ -2.13
EXOSC3Q9NQT5 AC025917.1-202ENST00000566344 635 ntTSL 5 BASIC1.75□□□□□ -2.13
EXOSC3Q9NQT5 AC026271.5-201ENST00000577873 130 ntBASIC1.75□□□□□ -2.13
EXOSC3Q9NQT5 MIR3923-201ENST00000579521 83 ntBASIC1.75□□□□□ -2.13
EXOSC3Q9NQT5 AP006219.1-201ENST00000580258 472 ntTSL 3 BASIC1.75□□□□□ -2.13
EXOSC3Q9NQT5 AC100830.2-201ENST00000581636 240 ntBASIC1.75□□□□□ -2.13
EXOSC3Q9NQT5 LINC01206-214ENST00000610910 456 ntTSL 5 BASIC1.75□□□□□ -2.13
EXOSC3Q9NQT5 ZEB2_AS1_1.1-201ENST00000621504 128 ntBASIC1.75□□□□□ -2.13
Retrieved 100 of 98,524 protein–RNA pairs in 131.9 ms