Protein–RNA interactions for Protein: Q96PN7

TRERF1, Transcriptional-regulating factor 1, humanhuman

Predictions only

Length 1,200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRERF1Q96PN7 RNU6-600P-201ENST00000362524 99 ntBASIC4.45□□□□□ -1.7
TRERF1Q96PN7 Y_RNA.251-201ENST00000364551 99 ntBASIC4.45□□□□□ -1.7
TRERF1Q96PN7 RNU6-915P-201ENST00000364943 103 ntBASIC4.45□□□□□ -1.7
TRERF1Q96PN7 RNU6-643P-201ENST00000384018 107 ntBASIC4.45□□□□□ -1.7
TRERF1Q96PN7 MIR449B-201ENST00000384995 97 ntBASIC4.45□□□□□ -1.7
TRERF1Q96PN7 MT-TT-201ENST00000387460 66 ntBASIC4.45□□□□□ -1.7
TRERF1Q96PN7 U3.40-201ENST00000408706 208 ntBASIC4.45□□□□□ -1.7
TRERF1Q96PN7 RHEBP3-201ENST00000411920 351 ntBASIC4.45□□□□□ -1.7
TRERF1Q96PN7 AC096649.2-201ENST00000416186 393 ntBASIC4.45□□□□□ -1.7
TRERF1Q96PN7 AC074117.2-201ENST00000417130 397 ntBASIC4.45□□□□□ -1.7
TRERF1Q96PN7 CYCSP49-201ENST00000420810 319 ntBASIC4.45□□□□□ -1.7
TRERF1Q96PN7 AC004870.4-201ENST00000424359 360 ntTSL 2 BASIC4.45□□□□□ -1.7
TRERF1Q96PN7 HMGB1P37-201ENST00000439613 609 ntBASIC4.45□□□□□ -1.7
TRERF1Q96PN7 AL356535.1-201ENST00000440335 398 ntBASIC4.45□□□□□ -1.7
TRERF1Q96PN7 AC007969.2-201ENST00000441891 191 ntBASIC4.45□□□□□ -1.7
TRERF1Q96PN7 AL121914.1-201ENST00000450188 156 ntBASIC4.45□□□□□ -1.7
TRERF1Q96PN7 RNU1-95P-201ENST00000516357 160 ntBASIC4.45□□□□□ -1.7
TRERF1Q96PN7 RNU1-128P-201ENST00000516704 160 ntBASIC4.45□□□□□ -1.7
TRERF1Q96PN7 AC024220.1-201ENST00000603675 484 ntBASIC4.45□□□□□ -1.7
TRERF1Q96PN7 SNORA51-201ENST00000606420 132 ntBASIC4.45□□□□□ -1.7
TRERF1Q96PN7 MIR3674-201ENST00000636576 68 ntBASIC4.45□□□□□ -1.7
TRERF1Q96PN7 hsa-mir-548d-1.1-201ENST00000636914 97 ntBASIC4.45□□□□□ -1.7
TRERF1Q96PN7 MIR3914-2-201ENST00000637339 95 ntBASIC4.45□□□□□ -1.7
TRERF1Q96PN7 CRB1-201ENST00000367397 9023 ntTSL 2 BASIC4.45□□□□□ -1.7
TRERF1Q96PN7 SYNE2-202ENST00000344113 21777 ntAPPRIS ALT2 TSL 1 (best) BASIC4.45□□□□□ -1.7
TRERF1Q96PN7 DNAJC10-201ENST00000264065 20129 ntAPPRIS P1 TSL 1 (best) BASIC4.44□□□□□ -1.7
TRERF1Q96PN7 GPRC6A-203ENST00000530250 2310 ntTSL 1 (best) BASIC4.44□□□□□ -1.7
TRERF1Q96PN7 RNU6-727P-201ENST00000363592 107 ntBASIC4.44□□□□□ -1.7
TRERF1Q96PN7 RNU6-324P-201ENST00000363957 106 ntBASIC4.44□□□□□ -1.7
TRERF1Q96PN7 SNORA25.7-201ENST00000364375 127 ntBASIC4.44□□□□□ -1.7
TRERF1Q96PN7 RNU6-969P-201ENST00000383900 105 ntBASIC4.44□□□□□ -1.7
TRERF1Q96PN7 AL591419.1-201ENST00000427423 339 ntBASIC4.44□□□□□ -1.7
TRERF1Q96PN7 SNRPEP9-201ENST00000436794 238 ntBASIC4.44□□□□□ -1.7
TRERF1Q96PN7 NDUFS5P3-201ENST00000450668 321 ntBASIC4.44□□□□□ -1.7
TRERF1Q96PN7 AC055733.2-201ENST00000504737 340 ntTSL 2 BASIC4.44□□□□□ -1.7
TRERF1Q96PN7 RNU2-12P-201ENST00000517216 168 ntBASIC4.44□□□□□ -1.7
TRERF1Q96PN7 AC136628.3-201ENST00000521868 290 ntBASIC4.44□□□□□ -1.7
TRERF1Q96PN7 AC008739.3-201ENST00000603262 127 ntBASIC4.44□□□□□ -1.7
TRERF1Q96PN7 AC136601.2-201ENST00000604356 474 ntBASIC4.44□□□□□ -1.7
TRERF1Q96PN7 AC099654.7-201ENST00000635788 2127 ntBASIC4.44□□□□□ -1.7
TRERF1Q96PN7 MIR6844-201ENST00000637122 62 ntBASIC4.44□□□□□ -1.7
TRERF1Q96PN7 PDE1A-205ENST00000435564 4885 ntAPPRIS P3 TSL 1 (best) BASIC4.44□□□□□ -1.7
TRERF1Q96PN7 TNNI3K-201ENST00000326637 3001 ntAPPRIS P1 TSL 1 (best) BASIC4.44□□□□□ -1.7
TRERF1Q96PN7 OTUD6B-AS1-201ENST00000522817 4275 ntTSL 2 BASIC4.44□□□□□ -1.7
TRERF1Q96PN7 AC010329.5-201ENST00000623497 2174 ntBASIC4.44□□□□□ -1.7
TRERF1Q96PN7 DDX60L-201ENST00000260184 6754 ntAPPRIS P1 TSL 5 BASIC4.44□□□□□ -1.7
TRERF1Q96PN7 CENPF-201ENST00000366955 10307 ntAPPRIS P1 TSL 1 (best) BASIC4.44□□□□□ -1.7
TRERF1Q96PN7 SKIL-201ENST00000259119 3057 ntAPPRIS P1 TSL 1 (best) BASIC4.44□□□□□ -1.7
TRERF1Q96PN7 PLCL2-202ENST00000432376 3940 ntAPPRIS P3 TSL 1 (best) BASIC4.43□□□□□ -1.7
TRERF1Q96PN7 ZNF705E-201ENST00000525199 3442 ntAPPRIS P1 TSL 2 BASIC4.43□□□□□ -1.7
TRERF1Q96PN7 ZNF644-212ENST00000621077 2056 ntTSL 5 BASIC4.43□□□□□ -1.7
TRERF1Q96PN7 RNU6-1181P-201ENST00000384191 106 ntBASIC4.43□□□□□ -1.7
TRERF1Q96PN7 MIR544A-201ENST00000384855 91 ntBASIC4.43□□□□□ -1.7
TRERF1Q96PN7 MIR15B-201ENST00000385045 98 ntBASIC4.43□□□□□ -1.7
TRERF1Q96PN7 MIR493-201ENST00000385254 89 ntBASIC4.43□□□□□ -1.7
TRERF1Q96PN7 MIR616-201ENST00000385293 97 ntBASIC4.43□□□□□ -1.7
TRERF1Q96PN7 TRAJ7-201ENST00000390530 59 ntAPPRIS P1 BASIC4.43□□□□□ -1.7
TRERF1Q96PN7 KRTAP25-1-201ENST00000416044 370 ntAPPRIS P1 BASIC4.43□□□□□ -1.7
TRERF1Q96PN7 AL139247.1-201ENST00000422768 325 ntBASIC4.43□□□□□ -1.7
TRERF1Q96PN7 AC005154.1-208ENST00000440438 353 ntTSL 5 BASIC4.43□□□□□ -1.7
TRERF1Q96PN7 AC007099.2-201ENST00000444852 336 ntTSL 5 BASIC4.43□□□□□ -1.7
TRERF1Q96PN7 AL353742.1-201ENST00000453455 224 ntTSL 3 BASIC4.43□□□□□ -1.7
TRERF1Q96PN7 RPL23AP14-201ENST00000468281 468 ntBASIC4.43□□□□□ -1.7
TRERF1Q96PN7 RNU6-772P-201ENST00000516042 105 ntBASIC4.43□□□□□ -1.7
TRERF1Q96PN7 SNORA31.8-201ENST00000516327 108 ntBASIC4.43□□□□□ -1.7
TRERF1Q96PN7 RNA5SP54-201ENST00000516951 92 ntBASIC4.43□□□□□ -1.7
TRERF1Q96PN7 CYCSP23-201ENST00000519781 313 ntBASIC4.43□□□□□ -1.7
TRERF1Q96PN7 AC022695.1-201ENST00000522089 237 ntBASIC4.43□□□□□ -1.7
TRERF1Q96PN7 AF099810.1-201ENST00000554219 525 ntTSL 3 BASIC4.43□□□□□ -1.7
TRERF1Q96PN7 MUCL1-205ENST00000619042 243 ntAPPRIS ALT2 TSL 5 BASIC4.43□□□□□ -1.7
TRERF1Q96PN7 LINC01002-202ENST00000631412 459 ntTSL 5 BASIC4.43□□□□□ -1.7
TRERF1Q96PN7 ETV1-202ENST00000399357 6096 ntTSL 2 BASIC4.43□□□□□ -1.7
TRERF1Q96PN7 ETV1-203ENST00000403527 3363 ntTSL 1 (best) BASIC4.43□□□□□ -1.7
TRERF1Q96PN7 N4BP2L2-201ENST00000267068 9427 ntAPPRIS P1 TSL 1 (best) BASIC4.42□□□□□ -1.7
TRERF1Q96PN7 PALMD-205ENST00000615664 1844 ntTSL 5 BASIC4.42□□□□□ -1.7
TRERF1Q96PN7 RNFT1-201ENST00000305783 2101 ntAPPRIS P1 TSL 1 (best) BASIC4.42□□□□□ -1.7
TRERF1Q96PN7 PRKD3-202ENST00000379066 6111 ntAPPRIS P1 TSL 5 BASIC4.42□□□□□ -1.7
TRERF1Q96PN7 BIRC3-206ENST00000532808 4238 ntAPPRIS P1 TSL 5 BASIC4.42□□□□□ -1.7
TRERF1Q96PN7 LATS1-201ENST00000253339 4256 ntAPPRIS P1 TSL 1 (best) BASIC4.42□□□□□ -1.7
TRERF1Q96PN7 RNU6-799P-201ENST00000363567 107 ntBASIC4.42□□□□□ -1.7
TRERF1Q96PN7 RNU6-454P-201ENST00000364292 107 ntBASIC4.42□□□□□ -1.7
TRERF1Q96PN7 RNU6-1310P-201ENST00000384153 107 ntBASIC4.42□□□□□ -1.7
TRERF1Q96PN7 RNU6-793P-201ENST00000384233 104 ntBASIC4.42□□□□□ -1.7
TRERF1Q96PN7 RPL21P17-201ENST00000397467 475 ntBASIC4.42□□□□□ -1.7
TRERF1Q96PN7 MTCO1P44-201ENST00000441935 243 ntBASIC4.42□□□□□ -1.7
TRERF1Q96PN7 AC006026.2-201ENST00000457376 180 ntBASIC4.42□□□□□ -1.7
TRERF1Q96PN7 AL133162.1-201ENST00000463228 453 ntBASIC4.42□□□□□ -1.7
TRERF1Q96PN7 AC016632.1-201ENST00000503994 196 ntBASIC4.42□□□□□ -1.7
TRERF1Q96PN7 AC010457.1-201ENST00000510469 458 ntTSL 3 BASIC4.42□□□□□ -1.7
TRERF1Q96PN7 SNORD33.1-201ENST00000516213 88 ntBASIC4.42□□□□□ -1.7
TRERF1Q96PN7 AL356157.2-201ENST00000605122 111 ntBASIC4.42□□□□□ -1.7
TRERF1Q96PN7 AL391261.4-201ENST00000616012 481 ntBASIC4.42□□□□□ -1.7
TRERF1Q96PN7 AL591424.2-201ENST00000617023 128 ntBASIC4.42□□□□□ -1.7
TRERF1Q96PN7 USH2A-202ENST00000366942 6320 ntTSL 1 (best) BASIC4.42□□□□□ -1.7
TRERF1Q96PN7 AC010733.2-201ENST00000589496 5702 ntBASIC4.42□□□□□ -1.7
TRERF1Q96PN7 WDR72-201ENST00000360509 5887 ntAPPRIS P2 TSL 1 (best) BASIC4.42□□□□□ -1.7
TRERF1Q96PN7 SLC6A15-203ENST00000450363 4229 ntTSL 1 (best) BASIC4.41□□□□□ -1.7
TRERF1Q96PN7 SYNE1-212ENST00000423061 27436 ntAPPRIS ALT2 TSL 1 (best) BASIC4.41□□□□□ -1.7
TRERF1Q96PN7 MGA-201ENST00000219905 12042 ntAPPRIS P4 TSL 5 BASIC4.41□□□□□ -1.7
TRERF1Q96PN7 LRRTM4-201ENST00000409088 3616 ntTSL 1 (best) BASIC4.41□□□□□ -1.7
Retrieved 100 of 98,524 protein–RNA pairs in 108.7 ms