Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 DNAH14-208ENST00000430092 13763 ntAPPRIS P1 TSL 5 BASIC4.71□□□□□ -1.66
COL9A1P20849 ERICH3-AS1-202ENST00000612390 4874 ntTSL 1 (best) BASIC4.71□□□□□ -1.66
COL9A1P20849 AC021146.4-201ENST00000309229 279 ntBASIC4.71□□□□□ -1.66
COL9A1P20849 RNU6-1209P-201ENST00000363655 107 ntBASIC4.71□□□□□ -1.66
COL9A1P20849 RNU6-301P-201ENST00000384277 107 ntBASIC4.71□□□□□ -1.66
COL9A1P20849 RNA5SP354-201ENST00000391247 136 ntBASIC4.71□□□□□ -1.66
COL9A1P20849 AC011406.1-201ENST00000512440 370 ntBASIC4.71□□□□□ -1.66
COL9A1P20849 HMGN2P15-201ENST00000585707 270 ntBASIC4.71□□□□□ -1.66
COL9A1P20849 VWC2L-202ENST00000427124 4480 ntTSL 1 (best) BASIC4.71□□□□□ -1.66
COL9A1P20849 OR56A1-202ENST00000641423 6096 ntAPPRIS P1 BASIC4.71□□□□□ -1.66
COL9A1P20849 RIMS2-205ENST00000436393 4384 ntTSL 2 BASIC4.71□□□□□ -1.66
COL9A1P20849 PROX1-205ENST00000498508 8498 ntAPPRIS P1 TSL 1 (best) BASIC4.71□□□□□ -1.66
COL9A1P20849 AC112198.2-201ENST00000426589 6996 ntBASIC4.71□□□□□ -1.66
COL9A1P20849 IQCH-202ENST00000358767 3062 ntTSL 5 BASIC4.71□□□□□ -1.66
COL9A1P20849 AHNAK-202ENST00000378024 18787 ntAPPRIS P3 TSL 2 BASIC4.7□□□□□ -1.66
COL9A1P20849 CP-201ENST00000264613 4676 ntAPPRIS P1 TSL 1 (best) BASIC4.7□□□□□ -1.66
COL9A1P20849 C6-202ENST00000337836 3551 ntAPPRIS P1 TSL 1 (best) BASIC4.7□□□□□ -1.66
COL9A1P20849 RNU1-57P-201ENST00000384491 166 ntBASIC4.7□□□□□ -1.66
COL9A1P20849 MIR607-201ENST00000385241 96 ntBASIC4.7□□□□□ -1.66
COL9A1P20849 SNORA12-201ENST00000391162 147 ntBASIC4.7□□□□□ -1.66
COL9A1P20849 MIR1289-1-201ENST00000408836 144 ntBASIC4.7□□□□□ -1.66
COL9A1P20849 PGBD4P5-201ENST00000445958 426 ntBASIC4.7□□□□□ -1.66
COL9A1P20849 IGHVIII-67-2-201ENST00000519849 88 ntBASIC4.7□□□□□ -1.66
COL9A1P20849 AP001458.1-201ENST00000532626 92 ntTSL 3 BASIC4.7□□□□□ -1.66
COL9A1P20849 GNRHR2P1-201ENST00000555315 631 ntBASIC4.7□□□□□ -1.66
COL9A1P20849 RNU1-30P-201ENST00000606575 163 ntBASIC4.7□□□□□ -1.66
COL9A1P20849 IFIT2-203ENST00000638108 3703 ntAPPRIS P2 TSL 5 BASIC4.7□□□□□ -1.66
COL9A1P20849 RC3H1-202ENST00000367694 3775 ntAPPRIS ALT1 TSL 2 BASIC4.7□□□□□ -1.66
COL9A1P20849 MBNL1-218ENST00000485910 4257 ntTSL 1 (best) BASIC4.7□□□□□ -1.66
COL9A1P20849 PATJ-213ENST00000613764 4172 ntTSL 5 BASIC4.7□□□□□ -1.66
COL9A1P20849 NSD1-202ENST00000354179 12195 ntTSL 5 BASIC4.7□□□□□ -1.66
COL9A1P20849 ABCA8-215ENST00000615593 3264 ntTSL 5 BASIC4.7□□□□□ -1.66
COL9A1P20849 WDR49-201ENST00000308378 2594 ntAPPRIS P2 TSL 1 (best) BASIC4.69□□□□□ -1.66
COL9A1P20849 FAM111B-202ENST00000411426 3344 ntTSL 4 BASIC4.69□□□□□ -1.66
COL9A1P20849 LINC00670-201ENST00000313495 2953 ntTSL 2 BASIC4.69□□□□□ -1.66
COL9A1P20849 R3HDM1-201ENST00000264160 4648 ntAPPRIS P3 TSL 1 (best) BASIC4.69□□□□□ -1.66
COL9A1P20849 FTX-210ENST00000603037 8347 ntTSL 5 BASIC4.69□□□□□ -1.66
COL9A1P20849 NXT2-201ENST00000218004 2692 ntTSL 1 (best) BASIC4.69□□□□□ -1.66
COL9A1P20849 RNU6-228P-201ENST00000362700 106 ntBASIC4.69□□□□□ -1.66
COL9A1P20849 RNY1P10-201ENST00000363268 113 ntBASIC4.69□□□□□ -1.66
COL9A1P20849 Y_RNA.342-201ENST00000365352 113 ntBASIC4.69□□□□□ -1.66
COL9A1P20849 SNORA1-201ENST00000384107 130 ntBASIC4.69□□□□□ -1.66
COL9A1P20849 RNU6-1124P-201ENST00000384169 107 ntBASIC4.69□□□□□ -1.66
COL9A1P20849 SNORA48.2-201ENST00000390926 124 ntBASIC4.69□□□□□ -1.66
COL9A1P20849 RPL21P65-201ENST00000406094 466 ntBASIC4.69□□□□□ -1.66
COL9A1P20849 AC078918.1-201ENST00000498515 228 ntBASIC4.69□□□□□ -1.66
COL9A1P20849 AC023141.12-201ENST00000512399 199 ntBASIC4.69□□□□□ -1.66
COL9A1P20849 RNA5SP395-201ENST00000516567 118 ntBASIC4.69□□□□□ -1.66
COL9A1P20849 RNU6-1098P-201ENST00000516772 96 ntBASIC4.69□□□□□ -1.66
COL9A1P20849 AC026992.1-202ENST00000558454 421 ntTSL 3 BASIC4.69□□□□□ -1.66
COL9A1P20849 OSBPL1A-217ENST00000638614 84 ntTSL 5 BASIC4.69□□□□□ -1.66
COL9A1P20849 PTPRB-202ENST00000334414 12316 ntAPPRIS P4 TSL 1 (best) BASIC4.69□□□□□ -1.66
COL9A1P20849 UNC80-203ENST00000439458 13562 ntAPPRIS P1 TSL 5 BASIC4.69□□□□□ -1.66
COL9A1P20849 MUC15-203ENST00000455601 3156 ntAPPRIS P1 TSL 2 BASIC4.69□□□□□ -1.66
COL9A1P20849 STK31-201ENST00000354639 3596 ntTSL 1 (best) BASIC4.69□□□□□ -1.66
COL9A1P20849 ANO6-205ENST00000441606 5955 ntAPPRIS ALT2 TSL 1 (best) BASIC4.69□□□□□ -1.66
COL9A1P20849 RAP1B-201ENST00000250559 13438 ntAPPRIS P1 TSL 1 (best) BASIC4.69□□□□□ -1.66
COL9A1P20849 POLR2B-213ENST00000639658 3300 ntTSL 5 BASIC4.69□□□□□ -1.66
COL9A1P20849 PIGN-245ENST00000640252 7924 ntAPPRIS P1 TSL 1 (best) BASIC4.68□□□□□ -1.66
COL9A1P20849 EFCAB5-201ENST00000394835 5132 ntAPPRIS P2 TSL 1 (best) BASIC4.68□□□□□ -1.66
COL9A1P20849 CSMD1-215ENST00000537824 13512 ntAPPRIS ALT2 TSL 5 BASIC4.68□□□□□ -1.66
COL9A1P20849 PTPRC-209ENST00000442510 5164 ntAPPRIS P4 TSL 1 (best) BASIC4.68□□□□□ -1.66
COL9A1P20849 OR8J3-204ENST00000642058 3806 ntAPPRIS P1 BASIC4.68□□□□□ -1.66
COL9A1P20849 AC009487.4-201ENST00000624969 3585 ntBASIC4.68□□□□□ -1.66
COL9A1P20849 DST-205ENST00000370765 8999 ntTSL 1 (best) BASIC4.68□□□□□ -1.66
COL9A1P20849 ATF7IP2-202ENST00000356427 3463 ntAPPRIS P1 TSL 1 (best) BASIC4.68□□□□□ -1.66
COL9A1P20849 LINC00276-202ENST00000418420 3503 ntTSL 1 (best) BASIC4.68□□□□□ -1.66
COL9A1P20849 DNM3OS-201ENST00000417354 4358 ntTSL 4 BASIC4.68□□□□□ -1.66
COL9A1P20849 SYT14-206ENST00000537238 5208 ntAPPRIS ALT2 TSL 5 BASIC4.68□□□□□ -1.66
COL9A1P20849 snoU2_19.1-201ENST00000362361 80 ntBASIC4.68□□□□□ -1.66
COL9A1P20849 Y_RNA.107-201ENST00000363190 121 ntBASIC4.68□□□□□ -1.66
COL9A1P20849 SNORD32B-201ENST00000364460 84 ntBASIC4.68□□□□□ -1.66
COL9A1P20849 MIR147B-201ENST00000390185 80 ntBASIC4.68□□□□□ -1.66
COL9A1P20849 SNORA19.1-201ENST00000410656 129 ntBASIC4.68□□□□□ -1.66
COL9A1P20849 VDAC1P3-201ENST00000434069 851 ntBASIC4.68□□□□□ -1.66
COL9A1P20849 RPL29-203ENST00000475248 551 ntAPPRIS P1 TSL 3 BASIC4.68□□□□□ -1.66
COL9A1P20849 RNU6-1149P-201ENST00000516810 97 ntBASIC4.68□□□□□ -1.66
COL9A1P20849 AC027419.1-201ENST00000522976 328 ntBASIC4.68□□□□□ -1.66
COL9A1P20849 AC141557.1-201ENST00000540982 400 ntBASIC4.68□□□□□ -1.66
COL9A1P20849 AC084364.2-201ENST00000546924 395 ntBASIC4.68□□□□□ -1.66
COL9A1P20849 AL355076.2-201ENST00000555736 544 ntTSL 5 BASIC4.68□□□□□ -1.66
COL9A1P20849 AC022601.1-201ENST00000596954 577 ntTSL 4 BASIC4.68□□□□□ -1.66
COL9A1P20849 C20orf24-208ENST00000639924 351 ntTSL 5 BASIC4.68□□□□□ -1.66
COL9A1P20849 AC139769.2-201ENST00000599944 2291 ntTSL 2 BASIC4.68□□□□□ -1.66
COL9A1P20849 LRRC37A-203ENST00000496930 3860 ntTSL 2 BASIC4.68□□□□□ -1.66
COL9A1P20849 FGF12-204ENST00000445105 5406 ntTSL 1 (best) BASIC4.68□□□□□ -1.66
COL9A1P20849 KLHL13-201ENST00000262820 3972 ntAPPRIS P3 TSL 1 (best) BASIC4.68□□□□□ -1.66
COL9A1P20849 AC100800.1-201ENST00000524252 2054 ntTSL 1 (best) BASIC4.68□□□□□ -1.66
COL9A1P20849 AC009975.1-201ENST00000634588 2698 ntTSL 5 BASIC4.68□□□□□ -1.66
COL9A1P20849 MED13-201ENST00000397786 10465 ntAPPRIS P1 TSL 1 (best) BASIC4.68□□□□□ -1.66
COL9A1P20849 SPART-201ENST00000355182 4820 ntAPPRIS P1 TSL 5 BASIC4.67□□□□□ -1.66
COL9A1P20849 HGF-201ENST00000222390 5989 ntAPPRIS P3 TSL 1 (best) BASIC4.67□□□□□ -1.66
COL9A1P20849 ZNF594-201ENST00000399604 4862 ntAPPRIS P1 BASIC4.67□□□□□ -1.66
COL9A1P20849 RNU6-414P-201ENST00000363705 104 ntBASIC4.67□□□□□ -1.66
COL9A1P20849 SNORD14D-201ENST00000384390 87 ntBASIC4.67□□□□□ -1.66
COL9A1P20849 ARPP21-211ENST00000427542 568 ntTSL 4 BASIC4.67□□□□□ -1.66
COL9A1P20849 AC006349.1-201ENST00000555526 235 ntBASIC4.67□□□□□ -1.66
COL9A1P20849 JPX_2.1-201ENST00000614161 69 ntBASIC4.67□□□□□ -1.66
COL9A1P20849 PTPRC-201ENST00000348564 4626 ntAPPRIS ALT2 TSL 1 (best) BASIC4.67□□□□□ -1.66
COL9A1P20849 A1CF-205ENST00000374001 9221 ntAPPRIS ALT1 TSL 5 BASIC4.67□□□□□ -1.66
Retrieved 100 of 98,524 protein–RNA pairs in 100.5 ms