Protein–RNA interactions for Protein: Q9Y3E7

CHMP3, Charged multivesicular body protein 3, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP3Q9Y3E7 MIR888-201ENST00000401186 77 ntBASIC4.51□□□□□ -1.69
CHMP3Q9Y3E7 LINC00459-201ENST00000431656 376 ntTSL 2 BASIC4.51□□□□□ -1.69
CHMP3Q9Y3E7 VDAC1P3-201ENST00000434069 851 ntBASIC4.51□□□□□ -1.69
CHMP3Q9Y3E7 RNU6-625P-201ENST00000459412 107 ntBASIC4.51□□□□□ -1.69
CHMP3Q9Y3E7 TRAPPC2P7-201ENST00000509650 231 ntBASIC4.51□□□□□ -1.69
CHMP3Q9Y3E7 RNU6-191P-201ENST00000516295 94 ntBASIC4.51□□□□□ -1.69
CHMP3Q9Y3E7 RNU6-1198P-201ENST00000516904 67 ntBASIC4.51□□□□□ -1.69
CHMP3Q9Y3E7 AC233702.2-202ENST00000562547 291 ntBASIC4.51□□□□□ -1.69
CHMP3Q9Y3E7 AC012531.5-201ENST00000611375 151 ntBASIC4.51□□□□□ -1.69
CHMP3Q9Y3E7 MIR3529-201ENST00000637713 78 ntBASIC4.51□□□□□ -1.69
CHMP3Q9Y3E7 AL109809.4-201ENST00000603520 2185 ntBASIC4.51□□□□□ -1.69
CHMP3Q9Y3E7 CEP44-201ENST00000296519 4173 ntAPPRIS P1 TSL 1 (best) BASIC4.51□□□□□ -1.69
CHMP3Q9Y3E7 AC018462.1-201ENST00000425966 1684 ntTSL 1 (best) BASIC4.51□□□□□ -1.69
CHMP3Q9Y3E7 RMDN2-203ENST00000402091 1973 ntTSL 2 BASIC4.51□□□□□ -1.69
CHMP3Q9Y3E7 CCDC178-205ENST00000406524 3039 ntAPPRIS ALT2 TSL 5 BASIC4.51□□□□□ -1.69
CHMP3Q9Y3E7 AC007656.2-201ENST00000624902 4547 ntBASIC4.5□□□□□ -1.69
CHMP3Q9Y3E7 AC110491.1-201ENST00000562191 2010 ntBASIC4.5□□□□□ -1.69
CHMP3Q9Y3E7 LINC01938-201ENST00000521341 1864 ntTSL 2 BASIC4.5□□□□□ -1.69
CHMP3Q9Y3E7 MTND5P35-201ENST00000557537 1720 ntBASIC4.5□□□□□ -1.69
CHMP3Q9Y3E7 Y_RNA.262-201ENST00000364641 102 ntBASIC4.5□□□□□ -1.69
CHMP3Q9Y3E7 LINC01545-201ENST00000377879 521 ntTSL 1 (best) BASIC4.5□□□□□ -1.69
CHMP3Q9Y3E7 SNORD116-18-201ENST00000383961 92 ntBASIC4.5□□□□□ -1.69
CHMP3Q9Y3E7 RNU6-1081P-201ENST00000384537 107 ntBASIC4.5□□□□□ -1.69
CHMP3Q9Y3E7 MIR607-201ENST00000385241 96 ntBASIC4.5□□□□□ -1.69
CHMP3Q9Y3E7 YPEL5P1-201ENST00000419731 367 ntBASIC4.5□□□□□ -1.69
CHMP3Q9Y3E7 AL139254.1-201ENST00000421114 376 ntTSL 3 BASIC4.5□□□□□ -1.69
CHMP3Q9Y3E7 AC099548.1-201ENST00000421443 426 ntBASIC4.5□□□□□ -1.69
CHMP3Q9Y3E7 SNORD105B-201ENST00000458770 79 ntBASIC4.5□□□□□ -1.69
CHMP3Q9Y3E7 SNRPGP3-201ENST00000469405 227 ntBASIC4.5□□□□□ -1.69
CHMP3Q9Y3E7 RN7SKP289-201ENST00000517244 295 ntBASIC4.5□□□□□ -1.69
CHMP3Q9Y3E7 AC018448.1-201ENST00000552843 316 ntBASIC4.5□□□□□ -1.69
CHMP3Q9Y3E7 AC021231.3-201ENST00000558497 370 ntBASIC4.5□□□□□ -1.69
CHMP3Q9Y3E7 AC009163.5-201ENST00000575421 637 ntBASIC4.5□□□□□ -1.69
CHMP3Q9Y3E7 AC108706.1-201ENST00000611053 297 ntBASIC4.5□□□□□ -1.69
CHMP3Q9Y3E7 AC068831.7-201ENST00000616954 363 ntBASIC4.5□□□□□ -1.69
CHMP3Q9Y3E7 U4.6-201ENST00000621618 127 ntBASIC4.5□□□□□ -1.69
CHMP3Q9Y3E7 AC091932.3-201ENST00000624223 323 ntBASIC4.5□□□□□ -1.69
CHMP3Q9Y3E7 ZNF99-202ENST00000596209 7817 ntTSL 5 BASIC4.5□□□□□ -1.69
CHMP3Q9Y3E7 AC242426.3-202ENST00000607149 2397 ntTSL 5 BASIC4.5□□□□□ -1.69
CHMP3Q9Y3E7 TTC6-201ENST00000267368 1681 ntTSL 5 BASIC4.5□□□□□ -1.69
CHMP3Q9Y3E7 AC079160.1-202ENST00000508406 2795 ntTSL 5 BASIC4.5□□□□□ -1.69
CHMP3Q9Y3E7 XRN1-202ENST00000392981 5383 ntAPPRIS ALT1 TSL 1 (best) BASIC4.5□□□□□ -1.69
CHMP3Q9Y3E7 GPRC6A-201ENST00000310357 2860 ntAPPRIS P1 TSL 1 (best) BASIC4.5□□□□□ -1.69
CHMP3Q9Y3E7 OR9G4-203ENST00000641581 2603 ntAPPRIS P1 BASIC4.49□□□□□ -1.69
CHMP3Q9Y3E7 OR9G4-204ENST00000641668 2608 ntAPPRIS P1 BASIC4.49□□□□□ -1.69
CHMP3Q9Y3E7 IQCH-201ENST00000335894 4208 ntAPPRIS P1 TSL 1 (best) BASIC4.49□□□□□ -1.69
CHMP3Q9Y3E7 Y_RNA.333-201ENST00000365274 102 ntBASIC4.49□□□□□ -1.69
CHMP3Q9Y3E7 Y_RNA.441-201ENST00000384123 112 ntBASIC4.49□□□□□ -1.69
CHMP3Q9Y3E7 MIR490-201ENST00000384865 128 ntBASIC4.49□□□□□ -1.69
CHMP3Q9Y3E7 MIR183-201ENST00000384958 110 ntBASIC4.49□□□□□ -1.69
CHMP3Q9Y3E7 MIR186-201ENST00000384988 86 ntBASIC4.49□□□□□ -1.69
CHMP3Q9Y3E7 AL357075.1-201ENST00000404107 726 ntBASIC4.49□□□□□ -1.69
CHMP3Q9Y3E7 AL357139.1-201ENST00000407792 426 ntBASIC4.49□□□□□ -1.69
CHMP3Q9Y3E7 AC078851.1-201ENST00000415918 298 ntTSL 3 BASIC4.49□□□□□ -1.69
CHMP3Q9Y3E7 AC012306.1-201ENST00000423267 114 ntBASIC4.49□□□□□ -1.69
CHMP3Q9Y3E7 RAB28P5-201ENST00000427490 651 ntBASIC4.49□□□□□ -1.69
CHMP3Q9Y3E7 AC078809.1-201ENST00000427601 140 ntBASIC4.49□□□□□ -1.69
CHMP3Q9Y3E7 RPL39P29-201ENST00000447779 157 ntBASIC4.49□□□□□ -1.69
CHMP3Q9Y3E7 AP002001.1-203ENST00000534002 267 ntBASIC4.49□□□□□ -1.69
CHMP3Q9Y3E7 AC110741.2-201ENST00000605278 268 ntBASIC4.49□□□□□ -1.69
CHMP3Q9Y3E7 AL008718.3-201ENST00000610217 321 ntBASIC4.49□□□□□ -1.69
CHMP3Q9Y3E7 MESTIT1_1.1-201ENST00000618871 140 ntBASIC4.49□□□□□ -1.69
CHMP3Q9Y3E7 U6.105-201ENST00000637379 88 ntBASIC4.49□□□□□ -1.69
CHMP3Q9Y3E7 RTN4-209ENST00000405240 4061 ntTSL 1 (best) BASIC4.49□□□□□ -1.69
CHMP3Q9Y3E7 USP8P1-201ENST00000494673 3183 ntBASIC4.49□□□□□ -1.69
CHMP3Q9Y3E7 EPC1-203ENST00000375110 3909 ntTSL 1 (best) BASIC4.49□□□□□ -1.69
CHMP3Q9Y3E7 FIGNL1-203ENST00000419119 3700 ntAPPRIS P1 TSL 1 (best) BASIC4.49□□□□□ -1.69
CHMP3Q9Y3E7 GLCE-202ENST00000559420 4840 ntTSL 1 (best) BASIC4.49□□□□□ -1.69
CHMP3Q9Y3E7 IDE-202ENST00000371581 4480 ntTSL 2 BASIC4.48□□□□□ -1.69
CHMP3Q9Y3E7 BLM-208ENST00000560509 3966 ntTSL 1 (best) BASIC4.48□□□□□ -1.69
CHMP3Q9Y3E7 MUC7-202ENST00000413702 2540 ntAPPRIS P2 TSL 4 BASIC4.48□□□□□ -1.69
CHMP3Q9Y3E7 SLC30A6-203ENST00000379343 2354 ntTSL 1 (best) BASIC4.48□□□□□ -1.69
CHMP3Q9Y3E7 FBXL13-204ENST00000436908 2577 ntTSL 5 BASIC4.48□□□□□ -1.69
CHMP3Q9Y3E7 AC092268.1-201ENST00000342691 405 ntBASIC4.48□□□□□ -1.69
CHMP3Q9Y3E7 RNU6-799P-201ENST00000363567 107 ntBASIC4.48□□□□□ -1.69
CHMP3Q9Y3E7 AP003170.3-201ENST00000399123 158 ntTSL 5 BASIC4.48□□□□□ -1.69
CHMP3Q9Y3E7 RNU6-1199P-201ENST00000411249 104 ntBASIC4.48□□□□□ -1.69
CHMP3Q9Y3E7 LINC01162-201ENST00000447262 447 ntTSL 5 BASIC4.48□□□□□ -1.69
CHMP3Q9Y3E7 AC025518.1-201ENST00000479856 347 ntBASIC4.48□□□□□ -1.69
CHMP3Q9Y3E7 AC093893.1-201ENST00000505781 510 ntTSL 5 BASIC4.48□□□□□ -1.69
CHMP3Q9Y3E7 MIR2114-201ENST00000516645 80 ntBASIC4.48□□□□□ -1.69
CHMP3Q9Y3E7 RN7SKP209-201ENST00000516888 304 ntBASIC4.48□□□□□ -1.69
CHMP3Q9Y3E7 AP005660.1-201ENST00000522972 293 ntBASIC4.48□□□□□ -1.69
CHMP3Q9Y3E7 AC023442.3-201ENST00000532199 495 ntTSL 2 BASIC4.48□□□□□ -1.69
CHMP3Q9Y3E7 AP001001.1-201ENST00000532422 826 ntTSL 3 BASIC4.48□□□□□ -1.69
CHMP3Q9Y3E7 CARD18-203ENST00000532895 422 ntTSL 2 BASIC4.48□□□□□ -1.69
CHMP3Q9Y3E7 AC104564.2-201ENST00000581240 270 ntTSL 3 BASIC4.48□□□□□ -1.69
CHMP3Q9Y3E7 AP001178.1-201ENST00000584679 268 ntTSL 3 BASIC4.48□□□□□ -1.69
CHMP3Q9Y3E7 DEFB117-201ENST00000602356 141 ntBASIC4.48□□□□□ -1.69
CHMP3Q9Y3E7 AC004467.1-201ENST00000615678 330 ntBASIC4.48□□□□□ -1.69
CHMP3Q9Y3E7 GEN1-201ENST00000317402 9854 ntAPPRIS P1 TSL 2 BASIC4.48□□□□□ -1.69
CHMP3Q9Y3E7 ZNF266-204ENST00000590306 3317 ntAPPRIS P1 TSL 1 (best) BASIC4.48□□□□□ -1.69
CHMP3Q9Y3E7 AF127577.6-201ENST00000623352 2191 ntBASIC4.48□□□□□ -1.69
CHMP3Q9Y3E7 OFD1P6Y-202ENST00000451061 2724 ntBASIC4.48□□□□□ -1.69
CHMP3Q9Y3E7 AC025164.2-202ENST00000499685 5699 ntTSL 3 BASIC4.48□□□□□ -1.69
CHMP3Q9Y3E7 MYOT-208ENST00000515645 1578 ntTSL 2 BASIC4.48□□□□□ -1.69
CHMP3Q9Y3E7 FER-201ENST00000281092 12119 ntAPPRIS P1 TSL 1 (best) BASIC4.48□□□□□ -1.69
CHMP3Q9Y3E7 LRMP-221ENST00000636465 4540 ntAPPRIS ALT2 TSL 5 BASIC4.47□□□□□ -1.69
CHMP3Q9Y3E7 MAP3K7-202ENST00000369325 4633 ntTSL 1 (best) BASIC4.47□□□□□ -1.69
CHMP3Q9Y3E7 RAD17-206ENST00000358030 2648 ntTSL 1 (best) BASIC4.47□□□□□ -1.69
Retrieved 100 of 98,524 protein–RNA pairs in 117.8 ms