Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 AC046143.2-201ENST00000609789 160 ntBASIC2.25□□□□□ -2.05
PDLIM3Q53GG5 AL161423.1-201ENST00000613700 262 ntBASIC2.25□□□□□ -2.05
PDLIM3Q53GG5 AC063943.3-201ENST00000615562 356 ntBASIC2.25□□□□□ -2.05
PDLIM3Q53GG5 AC104260.1-201ENST00000616660 539 ntBASIC2.25□□□□□ -2.05
PDLIM3Q53GG5 AC092794.2-201ENST00000620933 563 ntBASIC2.25□□□□□ -2.05
PDLIM3Q53GG5 ATP11C-201ENST00000327569 6115 ntAPPRIS P3 TSL 1 (best) BASIC2.25□□□□□ -2.05
PDLIM3Q53GG5 RNF219-AS1-214ENST00000607862 6001 ntTSL 1 (best) BASIC2.25□□□□□ -2.05
PDLIM3Q53GG5 LINC01938-201ENST00000521341 1864 ntTSL 2 BASIC2.24□□□□□ -2.05
PDLIM3Q53GG5 AC080100.1-201ENST00000624239 5356 ntBASIC2.24□□□□□ -2.05
PDLIM3Q53GG5 RNU6ATAC37P-201ENST00000408328 131 ntBASIC2.24□□□□□ -2.05
PDLIM3Q53GG5 U6atac.2-201ENST00000408644 118 ntBASIC2.24□□□□□ -2.05
PDLIM3Q53GG5 RNU2-23P-201ENST00000410545 195 ntBASIC2.24□□□□□ -2.05
PDLIM3Q53GG5 AC006150.1-201ENST00000412014 263 ntTSL 5 BASIC2.24□□□□□ -2.05
PDLIM3Q53GG5 AL592435.1-201ENST00000416401 469 ntTSL 3 BASIC2.24□□□□□ -2.05
PDLIM3Q53GG5 EIF4EP4-201ENST00000424916 578 ntBASIC2.24□□□□□ -2.05
PDLIM3Q53GG5 LINC00407-201ENST00000426509 295 ntTSL 5 BASIC2.24□□□□□ -2.05
PDLIM3Q53GG5 SIRPG-AS1-201ENST00000437384 410 ntTSL 3 BASIC2.24□□□□□ -2.05
PDLIM3Q53GG5 LINC02491-201ENST00000504710 403 ntTSL 2 BASIC2.24□□□□□ -2.05
PDLIM3Q53GG5 AC096711.2-201ENST00000510592 454 ntTSL 5 BASIC2.24□□□□□ -2.05
PDLIM3Q53GG5 TMCO5B-203ENST00000529623 509 ntTSL 4 BASIC2.24□□□□□ -2.05
PDLIM3Q53GG5 AC105245.1-201ENST00000581934 244 ntBASIC2.24□□□□□ -2.05
PDLIM3Q53GG5 AC091135.1-201ENST00000585943 307 ntBASIC2.24□□□□□ -2.05
PDLIM3Q53GG5 AL670379.2-201ENST00000604983 252 ntBASIC2.24□□□□□ -2.05
PDLIM3Q53GG5 ZCCHC10-202ENST00000355372 2160 ntAPPRIS ALT2 TSL 2 BASIC2.24□□□□□ -2.05
PDLIM3Q53GG5 QSER1-204ENST00000527788 5052 ntTSL 2 BASIC2.24□□□□□ -2.05
PDLIM3Q53GG5 TSLP-202ENST00000379706 2411 ntTSL 1 (best) BASIC2.23□□□□□ -2.05
PDLIM3Q53GG5 LTN1-201ENST00000361371 7685 ntAPPRIS P1 TSL 1 (best) BASIC2.23□□□□□ -2.05
PDLIM3Q53GG5 CENPE-201ENST00000265148 8612 ntAPPRIS P1 TSL 2 BASIC2.23□□□□□ -2.05
PDLIM3Q53GG5 AGR3-201ENST00000310398 749 ntAPPRIS P1 TSL 1 (best) BASIC2.23□□□□□ -2.05
PDLIM3Q53GG5 SNORD62.1-201ENST00000362541 86 ntBASIC2.23□□□□□ -2.05
PDLIM3Q53GG5 RNU6-859P-201ENST00000362728 107 ntBASIC2.23□□□□□ -2.05
PDLIM3Q53GG5 RNU6-655P-201ENST00000362858 107 ntBASIC2.23□□□□□ -2.05
PDLIM3Q53GG5 SNORA36A-201ENST00000384221 132 ntBASIC2.23□□□□□ -2.05
PDLIM3Q53GG5 RNU6-1222P-201ENST00000384615 107 ntBASIC2.23□□□□□ -2.05
PDLIM3Q53GG5 AC074085.1-201ENST00000413598 418 ntBASIC2.23□□□□□ -2.05
PDLIM3Q53GG5 AL590135.1-201ENST00000422215 156 ntBASIC2.23□□□□□ -2.05
PDLIM3Q53GG5 AC019205.3-201ENST00000424573 156 ntBASIC2.23□□□□□ -2.05
PDLIM3Q53GG5 AL445259.1-203ENST00000427828 251 ntTSL 3 BASIC2.23□□□□□ -2.05
PDLIM3Q53GG5 AL645568.3-201ENST00000433683 316 ntBASIC2.23□□□□□ -2.05
PDLIM3Q53GG5 AC016700.2-201ENST00000446011 156 ntBASIC2.23□□□□□ -2.05
PDLIM3Q53GG5 AL035634.1-201ENST00000446768 372 ntTSL 2 BASIC2.23□□□□□ -2.05
PDLIM3Q53GG5 FO393415.2-201ENST00000480085 343 ntBASIC2.23□□□□□ -2.05
PDLIM3Q53GG5 ATP1B3-AS1-201ENST00000492725 376 ntTSL 5 BASIC2.23□□□□□ -2.05
PDLIM3Q53GG5 AC015911.1-201ENST00000495111 156 ntBASIC2.23□□□□□ -2.05
PDLIM3Q53GG5 MTND5P5-201ENST00000503764 376 ntBASIC2.23□□□□□ -2.05
PDLIM3Q53GG5 RNU6-875P-201ENST00000516488 106 ntBASIC2.23□□□□□ -2.05
PDLIM3Q53GG5 CKS1BP7-201ENST00000522230 235 ntBASIC2.23□□□□□ -2.05
PDLIM3Q53GG5 AC093249.1-201ENST00000567049 203 ntBASIC2.23□□□□□ -2.05
PDLIM3Q53GG5 ZNF861P-201ENST00000588126 639 ntBASIC2.23□□□□□ -2.05
PDLIM3Q53GG5 AC124303.1-201ENST00000605703 360 ntBASIC2.23□□□□□ -2.05
PDLIM3Q53GG5 AL022345.1-201ENST00000607292 135 ntBASIC2.23□□□□□ -2.05
PDLIM3Q53GG5 AC002543.1-201ENST00000299783 1954 ntBASIC2.23□□□□□ -2.05
PDLIM3Q53GG5 Y_RNA.48-201ENST00000362710 103 ntBASIC2.22□□□□□ -2.05
PDLIM3Q53GG5 RNU6-1010P-201ENST00000362757 107 ntBASIC2.22□□□□□ -2.05
PDLIM3Q53GG5 RNU6-227P-201ENST00000362865 103 ntBASIC2.22□□□□□ -2.05
PDLIM3Q53GG5 RNU6-487P-201ENST00000365430 104 ntBASIC2.22□□□□□ -2.05
PDLIM3Q53GG5 SNORA67.4-201ENST00000384688 142 ntBASIC2.22□□□□□ -2.05
PDLIM3Q53GG5 TRDJ3-201ENST00000390476 59 ntAPPRIS P1 BASIC2.22□□□□□ -2.05
PDLIM3Q53GG5 DEFB110-202ENST00000393660 189 ntAPPRIS ALT2 TSL 1 (best) BASIC2.22□□□□□ -2.05
PDLIM3Q53GG5 AL360182.1-201ENST00000397433 468 ntBASIC2.22□□□□□ -2.05
PDLIM3Q53GG5 HNRNPDLP1-201ENST00000412834 550 ntBASIC2.22□□□□□ -2.05
PDLIM3Q53GG5 RPL37P10-201ENST00000412884 288 ntBASIC2.22□□□□□ -2.05
PDLIM3Q53GG5 AL445989.1-202ENST00000418943 776 ntTSL 2 BASIC2.22□□□□□ -2.05
PDLIM3Q53GG5 USP9YP30-201ENST00000430729 455 ntBASIC2.22□□□□□ -2.05
PDLIM3Q53GG5 LINC00459-201ENST00000431656 376 ntTSL 2 BASIC2.22□□□□□ -2.05
PDLIM3Q53GG5 AC244670.1-201ENST00000436879 112 ntBASIC2.22□□□□□ -2.05
PDLIM3Q53GG5 GPM6BP3-201ENST00000442797 145 ntBASIC2.22□□□□□ -2.05
PDLIM3Q53GG5 AC093019.1-201ENST00000443135 252 ntBASIC2.22□□□□□ -2.05
PDLIM3Q53GG5 AL592309.2-201ENST00000444647 607 ntTSL 5 BASIC2.22□□□□□ -2.05
PDLIM3Q53GG5 MTND1P17-201ENST00000448961 204 ntBASIC2.22□□□□□ -2.05
PDLIM3Q53GG5 LINC01077-201ENST00000452288 413 ntTSL 3 BASIC2.22□□□□□ -2.05
PDLIM3Q53GG5 AC117462.1-201ENST00000461186 554 ntTSL 4 BASIC2.22□□□□□ -2.05
PDLIM3Q53GG5 LINC02046-202ENST00000481334 390 ntTSL 3 BASIC2.22□□□□□ -2.05
PDLIM3Q53GG5 RPL36AP21-201ENST00000490372 323 ntBASIC2.22□□□□□ -2.05
PDLIM3Q53GG5 PTP4A1P4-201ENST00000512479 322 ntBASIC2.22□□□□□ -2.05
PDLIM3Q53GG5 RNA5SP82-201ENST00000516707 92 ntBASIC2.22□□□□□ -2.05
PDLIM3Q53GG5 SNORA31.16-201ENST00000516773 139 ntBASIC2.22□□□□□ -2.05
PDLIM3Q53GG5 AC004486.1-201ENST00000546846 233 ntBASIC2.22□□□□□ -2.05
PDLIM3Q53GG5 AC009120.5-201ENST00000561669 475 ntTSL 5 BASIC2.22□□□□□ -2.05
PDLIM3Q53GG5 AC007347.1-201ENST00000563879 281 ntTSL 3 BASIC2.22□□□□□ -2.05
PDLIM3Q53GG5 MYL12BP1-201ENST00000569826 507 ntBASIC2.22□□□□□ -2.05
PDLIM3Q53GG5 MIR4648-201ENST00000580107 72 ntBASIC2.22□□□□□ -2.05
PDLIM3Q53GG5 MIR3670-2-201ENST00000582974 65 ntBASIC2.22□□□□□ -2.05
PDLIM3Q53GG5 MIR3670-1-201ENST00000584160 65 ntBASIC2.22□□□□□ -2.05
PDLIM3Q53GG5 MIR3670-3-201ENST00000584855 65 ntBASIC2.22□□□□□ -2.05
PDLIM3Q53GG5 SNORD14A-201ENST00000606526 91 ntBASIC2.22□□□□□ -2.05
PDLIM3Q53GG5 AL133215.3-201ENST00000609801 448 ntBASIC2.22□□□□□ -2.05
PDLIM3Q53GG5 MIR3670-4-201ENST00000612260 65 ntBASIC2.22□□□□□ -2.05
PDLIM3Q53GG5 MIR6817-201ENST00000615588 66 ntBASIC2.22□□□□□ -2.05
PDLIM3Q53GG5 AC009233.1-201ENST00000616477 371 ntBASIC2.22□□□□□ -2.05
PDLIM3Q53GG5 ANKRD36BP1-201ENST00000358576 1779 ntBASIC2.22□□□□□ -2.05
PDLIM3Q53GG5 LIFR-201ENST00000263409 10089 ntAPPRIS P1 TSL 1 (best) BASIC2.22□□□□□ -2.05
PDLIM3Q53GG5 OGN-201ENST00000262551 2971 ntAPPRIS P1 TSL 5 BASIC2.22□□□□□ -2.05
PDLIM3Q53GG5 RNA5SP68-201ENST00000363885 119 ntBASIC2.21□□□□□ -2.06
PDLIM3Q53GG5 SNORD32A-201ENST00000364805 84 ntBASIC2.21□□□□□ -2.06
PDLIM3Q53GG5 Y_RNA.355-201ENST00000365462 98 ntBASIC2.21□□□□□ -2.06
PDLIM3Q53GG5 RNU6-1009P-201ENST00000390996 107 ntBASIC2.21□□□□□ -2.06
PDLIM3Q53GG5 MIR548K-201ENST00000408406 116 ntBASIC2.21□□□□□ -2.06
PDLIM3Q53GG5 RNU4-14P-201ENST00000410858 122 ntBASIC2.21□□□□□ -2.06
PDLIM3Q53GG5 LINC02336-201ENST00000434117 330 ntTSL 3 BASIC2.21□□□□□ -2.06
Retrieved 100 of 98,524 protein–RNA pairs in 107.2 ms