Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 SNORA31.5-201ENST00000516190 133 ntBASIC3.86□□□□□ -1.79
LIG3P49916 AC022695.1-201ENST00000522089 237 ntBASIC3.86□□□□□ -1.79
LIG3P49916 AC008011.1-201ENST00000545989 227 ntBASIC3.86□□□□□ -1.79
LIG3P49916 AC018448.1-201ENST00000552843 316 ntBASIC3.86□□□□□ -1.79
LIG3P49916 AF111169.4-202ENST00000553507 262 ntTSL 3 BASIC3.86□□□□□ -1.79
LIG3P49916 AC090877.1-201ENST00000561418 344 ntBASIC3.86□□□□□ -1.79
LIG3P49916 AC034229.5-201ENST00000624258 185 ntBASIC3.86□□□□□ -1.79
LIG3P49916 DAZ4-201ENST00000382296 2048 ntAPPRIS P5 TSL 5 BASIC3.86□□□□□ -1.79
LIG3P49916 AL353746.1-201ENST00000566293 6881 ntBASIC3.86□□□□□ -1.79
LIG3P49916 AL136164.4-201ENST00000625013 2135 ntBASIC3.86□□□□□ -1.79
LIG3P49916 AC099654.7-201ENST00000635788 2127 ntBASIC3.86□□□□□ -1.79
LIG3P49916 PKHD1L1-201ENST00000378402 13076 ntAPPRIS P1 TSL 1 (best) BASIC3.86□□□□□ -1.79
LIG3P49916 CEP85L-202ENST00000368488 7118 ntTSL 5 BASIC3.85□□□□□ -1.79
LIG3P49916 WNK3-205ENST00000620763 5400 ntTSL 5 BASIC3.85□□□□□ -1.79
LIG3P49916 MMS22L-202ENST00000369251 3949 ntTSL 2 BASIC3.85□□□□□ -1.79
LIG3P49916 KIF21A-203ENST00000541463 4866 ntTSL 1 (best) BASIC3.85□□□□□ -1.79
LIG3P49916 OR9G4-204ENST00000641668 2608 ntAPPRIS P1 BASIC3.85□□□□□ -1.79
LIG3P49916 MIR410-201ENST00000362222 80 ntBASIC3.85□□□□□ -1.79
LIG3P49916 RNU6-529P-201ENST00000363383 104 ntBASIC3.85□□□□□ -1.79
LIG3P49916 AP002088.1-201ENST00000382740 395 ntBASIC3.85□□□□□ -1.79
LIG3P49916 MIR549A-201ENST00000385268 96 ntBASIC3.85□□□□□ -1.79
LIG3P49916 MIR199A2-201ENST00000385289 110 ntBASIC3.85□□□□□ -1.79
LIG3P49916 RNU6ATAC-201ENST00000408749 126 ntBASIC3.85□□□□□ -1.79
LIG3P49916 LINC01810-201ENST00000450397 411 ntTSL 3 BASIC3.85□□□□□ -1.79
LIG3P49916 AC005042.3-201ENST00000453230 174 ntBASIC3.85□□□□□ -1.79
LIG3P49916 AC006539.3-201ENST00000454258 129 ntBASIC3.85□□□□□ -1.79
LIG3P49916 Y_RNA.644-201ENST00000459006 113 ntBASIC3.85□□□□□ -1.79
LIG3P49916 SNORA84-201ENST00000459229 133 ntBASIC3.85□□□□□ -1.79
LIG3P49916 Y_RNA.674-201ENST00000516362 113 ntBASIC3.85□□□□□ -1.79
LIG3P49916 SCARNA14-201ENST00000516903 136 ntBASIC3.85□□□□□ -1.79
LIG3P49916 AC069133.1-201ENST00000522857 566 ntTSL 4 BASIC3.85□□□□□ -1.79
LIG3P49916 AC087499.8-201ENST00000578406 226 ntBASIC3.85□□□□□ -1.79
LIG3P49916 KLKP1-201ENST00000595979 403 ntBASIC3.85□□□□□ -1.79
LIG3P49916 AL137843.1-201ENST00000605078 385 ntBASIC3.85□□□□□ -1.79
LIG3P49916 AC103858.1-201ENST00000607019 476 ntTSL 3 BASIC3.85□□□□□ -1.79
LIG3P49916 KCNQ1OT1_5.1-201ENST00000621902 226 ntBASIC3.85□□□□□ -1.79
LIG3P49916 ESCO1-201ENST00000269214 4523 ntAPPRIS P1 TSL 1 (best) BASIC3.85□□□□□ -1.79
LIG3P49916 ADAT2-203ENST00000606514 6651 ntTSL 1 (best) BASIC3.85□□□□□ -1.79
LIG3P49916 AL513302.2-201ENST00000562313 1842 ntBASIC3.84□□□□□ -1.79
LIG3P49916 TAX1BP1-213ENST00000543117 3365 ntAPPRIS ALT2 TSL 2 BASIC3.84□□□□□ -1.79
LIG3P49916 ATP2C1-202ENST00000359644 3401 ntAPPRIS P3 TSL 1 (best) BASIC3.84□□□□□ -1.79
LIG3P49916 MIR411-201ENST00000362239 96 ntBASIC3.84□□□□□ -1.79
LIG3P49916 RNU1-62P-201ENST00000362599 164 ntBASIC3.84□□□□□ -1.79
LIG3P49916 Y_RNA.40-201ENST00000362645 93 ntBASIC3.84□□□□□ -1.79
LIG3P49916 Y_RNA.76-201ENST00000362931 109 ntBASIC3.84□□□□□ -1.79
LIG3P49916 Y_RNA.275-201ENST00000364726 110 ntBASIC3.84□□□□□ -1.79
LIG3P49916 RNU6-740P-201ENST00000364734 105 ntBASIC3.84□□□□□ -1.79
LIG3P49916 SNORA18.3-201ENST00000384122 132 ntBASIC3.84□□□□□ -1.79
LIG3P49916 Y_RNA.498-201ENST00000384460 102 ntBASIC3.84□□□□□ -1.79
LIG3P49916 RNU6-1077P-201ENST00000410506 102 ntBASIC3.84□□□□□ -1.79
LIG3P49916 LINC01701-201ENST00000419614 451 ntTSL 2 BASIC3.84□□□□□ -1.79
LIG3P49916 IFNA11P-201ENST00000446352 526 ntBASIC3.84□□□□□ -1.79
LIG3P49916 RPL7P49-201ENST00000471402 708 ntBASIC3.84□□□□□ -1.79
LIG3P49916 RN7SL442P-201ENST00000473804 320 ntBASIC3.84□□□□□ -1.79
LIG3P49916 AC091179.3-201ENST00000474761 144 ntBASIC3.84□□□□□ -1.79
LIG3P49916 RN7SKP209-201ENST00000516888 304 ntBASIC3.84□□□□□ -1.79
LIG3P49916 AC083973.1-205ENST00000518994 601 ntTSL 2 BASIC3.84□□□□□ -1.79
LIG3P49916 AC004147.3-201ENST00000577709 375 ntTSL 3 BASIC3.84□□□□□ -1.79
LIG3P49916 AC022441.3-201ENST00000605737 136 ntBASIC3.84□□□□□ -1.79
LIG3P49916 AL590240.4-201ENST00000616908 390 ntBASIC3.84□□□□□ -1.79
LIG3P49916 AC135776.4-201ENST00000624300 1904 ntBASIC3.83□□□□□ -1.8
LIG3P49916 PLS1-201ENST00000337777 3755 ntAPPRIS P1 TSL 1 (best) BASIC3.83□□□□□ -1.8
LIG3P49916 ERMN-205ENST00000410096 3793 ntAPPRIS P1 TSL 1 (best) BASIC3.83□□□□□ -1.8
LIG3P49916 Y_RNA.136-201ENST00000363444 102 ntBASIC3.83□□□□□ -1.8
LIG3P49916 Y_RNA.180-201ENST00000363867 113 ntBASIC3.83□□□□□ -1.8
LIG3P49916 Y_RNA.383-201ENST00000383855 97 ntBASIC3.83□□□□□ -1.8
LIG3P49916 Y_RNA.446-201ENST00000384178 104 ntBASIC3.83□□□□□ -1.8
LIG3P49916 RNU6-378P-201ENST00000384324 107 ntBASIC3.83□□□□□ -1.8
LIG3P49916 Y_RNA.590-201ENST00000410140 107 ntBASIC3.83□□□□□ -1.8
LIG3P49916 RAB28P5-201ENST00000427490 651 ntBASIC3.83□□□□□ -1.8
LIG3P49916 MTND2P29-201ENST00000438595 412 ntBASIC3.83□□□□□ -1.8
LIG3P49916 RPL23AP3-201ENST00000453844 468 ntBASIC3.83□□□□□ -1.8
LIG3P49916 AP001324.2-201ENST00000461163 319 ntBASIC3.83□□□□□ -1.8
LIG3P49916 AC010401.1-201ENST00000463867 348 ntBASIC3.83□□□□□ -1.8
LIG3P49916 AC103975.1-201ENST00000482506 483 ntBASIC3.83□□□□□ -1.8
LIG3P49916 AC091959.1-201ENST00000495857 238 ntBASIC3.83□□□□□ -1.8
LIG3P49916 PHBP14-201ENST00000512887 367 ntBASIC3.83□□□□□ -1.8
LIG3P49916 AC009320.1-201ENST00000549070 349 ntTSL 3 BASIC3.83□□□□□ -1.8
LIG3P49916 AC027176.1-201ENST00000560204 514 ntBASIC3.83□□□□□ -1.8
LIG3P49916 AC026470.2-201ENST00000561492 181 ntBASIC3.83□□□□□ -1.8
LIG3P49916 AL138686.1-201ENST00000612699 315 ntTSL 3 BASIC3.83□□□□□ -1.8
LIG3P49916 AL158835.3-201ENST00000625908 565 ntTSL 5 BASIC3.83□□□□□ -1.8
LIG3P49916 PALMD-205ENST00000615664 1844 ntTSL 5 BASIC3.83□□□□□ -1.8
LIG3P49916 HELLS-201ENST00000239026 2740 ntTSL 5 BASIC3.83□□□□□ -1.8
LIG3P49916 ZNF266-204ENST00000590306 3317 ntAPPRIS P1 TSL 1 (best) BASIC3.83□□□□□ -1.8
LIG3P49916 SLC16A7-201ENST00000261187 11777 ntAPPRIS P1 TSL 1 (best) BASIC3.83□□□□□ -1.8
LIG3P49916 CUL4B-202ENST00000371322 4902 ntAPPRIS P1 TSL 1 (best) BASIC3.83□□□□□ -1.8
LIG3P49916 PTPN22-207ENST00000528414 3424 ntTSL 1 (best) BASIC3.82□□□□□ -1.8
LIG3P49916 P2RY13-201ENST00000325602 2764 ntAPPRIS P1 TSL 1 (best) BASIC3.82□□□□□ -1.8
LIG3P49916 CCDC110-202ENST00000393540 2722 ntAPPRIS ALT2 TSL 1 (best) BASIC3.82□□□□□ -1.8
LIG3P49916 RNFT1-201ENST00000305783 2101 ntAPPRIS P1 TSL 1 (best) BASIC3.82□□□□□ -1.8
LIG3P49916 GABRG2-215ENST00000639213 9960 ntTSL 1 (best) BASIC3.82□□□□□ -1.8
LIG3P49916 PWAR6-201ENST00000552334 4618 ntBASIC3.82□□□□□ -1.8
LIG3P49916 Y_RNA.150-201ENST00000363562 102 ntBASIC3.82□□□□□ -1.8
LIG3P49916 LINC00862-202ENST00000367356 759 ntTSL 3 BASIC3.82□□□□□ -1.8
LIG3P49916 AIMP1P2-201ENST00000425294 312 ntBASIC3.82□□□□□ -1.8
LIG3P49916 IGKV1OR9-2-201ENST00000431378 277 ntBASIC3.82□□□□□ -1.8
LIG3P49916 MTCO1P5-201ENST00000433573 344 ntBASIC3.82□□□□□ -1.8
LIG3P49916 MRPS10P1-201ENST00000448483 130 ntBASIC3.82□□□□□ -1.8
LIG3P49916 AL031183.1-201ENST00000457667 207 ntBASIC3.82□□□□□ -1.8
Retrieved 100 of 98,524 protein–RNA pairs in 103.2 ms