Protein–RNA interactions for Protein: P46779

RPL28, 60S ribosomal protein L28, humanhuman

Known RBP Predictions only

Length 137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPL28P46779 RNU6-11P-201ENST00000364234 107 ntBASIC0.68□□□□□ -2.3
RPL28P46779 Y_RNA.324-201ENST00000365165 102 ntBASIC0.68□□□□□ -2.3
RPL28P46779 SNORD115-7-201ENST00000365306 82 ntBASIC0.68□□□□□ -2.3
RPL28P46779 RNU6-25P-201ENST00000383873 107 ntBASIC0.68□□□□□ -2.3
RPL28P46779 RNU6-1-201ENST00000383898 107 ntBASIC0.68□□□□□ -2.3
RPL28P46779 RNU6-48P-201ENST00000384161 107 ntBASIC0.68□□□□□ -2.3
RPL28P46779 RNU6-36P-201ENST00000384172 107 ntBASIC0.68□□□□□ -2.3
RPL28P46779 SNORA29-201ENST00000384183 140 ntBASIC0.68□□□□□ -2.3
RPL28P46779 RNU6-4P-201ENST00000384205 107 ntBASIC0.68□□□□□ -2.3
RPL28P46779 RNU6-5P-201ENST00000384238 107 ntBASIC0.68□□□□□ -2.3
RPL28P46779 RNU6-3P-201ENST00000384314 107 ntBASIC0.68□□□□□ -2.3
RPL28P46779 SNORA25-201ENST00000384384 134 ntBASIC0.68□□□□□ -2.3
RPL28P46779 RNU6-16P-201ENST00000384385 107 ntBASIC0.68□□□□□ -2.3
RPL28P46779 RNU6-15P-201ENST00000384534 107 ntBASIC0.68□□□□□ -2.3
RPL28P46779 RNU6-2-201ENST00000384627 107 ntBASIC0.68□□□□□ -2.3
RPL28P46779 RNU6-29P-201ENST00000384637 107 ntBASIC0.68□□□□□ -2.3
RPL28P46779 RNU6-331P-201ENST00000384724 107 ntBASIC0.68□□□□□ -2.3
RPL28P46779 RNU6-9-201ENST00000384776 107 ntBASIC0.68□□□□□ -2.3
RPL28P46779 Y_RNA.576-201ENST00000384781 102 ntBASIC0.68□□□□□ -2.3
RPL28P46779 RNU6-33P-201ENST00000384793 107 ntBASIC0.68□□□□□ -2.3
RPL28P46779 SNRPEP10-201ENST00000420249 274 ntBASIC0.68□□□□□ -2.3
RPL28P46779 AC012368.2-201ENST00000423539 560 ntTSL 3 BASIC0.68□□□□□ -2.3
RPL28P46779 LINC01611-201ENST00000428896 477 ntTSL 5 BASIC0.68□□□□□ -2.3
RPL28P46779 AC132479.1-201ENST00000449160 144 ntBASIC0.68□□□□□ -2.3
RPL28P46779 SNRPGP7-201ENST00000469016 106 ntBASIC0.68□□□□□ -2.3
RPL28P46779 AC034244.1-201ENST00000507687 207 ntBASIC0.68□□□□□ -2.3
RPL28P46779 AC108729.3-201ENST00000513484 108 ntBASIC0.68□□□□□ -2.3
RPL28P46779 APELA-204ENST00000515275 551 ntAPPRIS P1 TSL 3 BASIC0.68□□□□□ -2.3
RPL28P46779 RN7SKP88-201ENST00000516847 250 ntBASIC0.68□□□□□ -2.3
RPL28P46779 RNU6-856P-201ENST00000516959 98 ntBASIC0.68□□□□□ -2.3
RPL28P46779 AC109479.2-201ENST00000517842 174 ntBASIC0.68□□□□□ -2.3
RPL28P46779 MDM2-221ENST00000517852 393 ntTSL 1 (best) BASIC0.68□□□□□ -2.3
RPL28P46779 AC022616.3-201ENST00000523940 148 ntBASIC0.68□□□□□ -2.3
RPL28P46779 AC023050.3-201ENST00000541142 333 ntBASIC0.68□□□□□ -2.3
RPL28P46779 AL133279.1-202ENST00000556789 456 ntTSL 5 BASIC0.68□□□□□ -2.3
RPL28P46779 AC018767.1-201ENST00000566236 405 ntTSL 3 BASIC0.68□□□□□ -2.3
RPL28P46779 MIR3664-201ENST00000579074 99 ntBASIC0.68□□□□□ -2.3
RPL28P46779 AL031281.1-201ENST00000604049 488 ntBASIC0.68□□□□□ -2.3
RPL28P46779 RPL17P51-201ENST00000605218 238 ntBASIC0.68□□□□□ -2.3
RPL28P46779 AL121992.2-201ENST00000606262 256 ntBASIC0.68□□□□□ -2.3
RPL28P46779 RNU6-6P-201ENST00000606623 107 ntBASIC0.68□□□□□ -2.3
RPL28P46779 snoU13.31-201ENST00000607291 104 ntBASIC0.68□□□□□ -2.3
RPL28P46779 AL353149.1-201ENST00000610667 244 ntBASIC0.68□□□□□ -2.3
RPL28P46779 7SK.8-201ENST00000612110 250 ntBASIC0.68□□□□□ -2.3
RPL28P46779 CENPF-206ENST00000614578 528 ntTSL 5 BASIC0.68□□□□□ -2.3
RPL28P46779 7SK.11-201ENST00000615477 250 ntBASIC0.68□□□□□ -2.3
RPL28P46779 7SK.13-201ENST00000622040 250 ntBASIC0.68□□□□□ -2.3
RPL28P46779 AC092268.1-201ENST00000342691 405 ntBASIC0.67□□□□□ -2.3
RPL28P46779 KLRF1-202ENST00000354855 838 ntTSL 1 (best) BASIC0.67□□□□□ -2.3
RPL28P46779 Y_RNA.327-201ENST00000365201 102 ntBASIC0.67□□□□□ -2.3
RPL28P46779 TRAJ3-201ENST00000390534 62 ntAPPRIS P1 BASIC0.67□□□□□ -2.3
RPL28P46779 RPS29P13-201ENST00000402041 169 ntBASIC0.67□□□□□ -2.3
RPL28P46779 AC009411.1-202ENST00000412424 548 ntTSL 4 BASIC0.67□□□□□ -2.3
RPL28P46779 LINC01853-201ENST00000417715 444 ntTSL 3 BASIC0.67□□□□□ -2.3
RPL28P46779 LINC01701-201ENST00000419614 451 ntTSL 2 BASIC0.67□□□□□ -2.3
RPL28P46779 AL136980.1-201ENST00000426764 543 ntTSL 3 BASIC0.67□□□□□ -2.3
RPL28P46779 RPL23AP95-201ENST00000426806 265 ntBASIC0.67□□□□□ -2.3
RPL28P46779 AL133396.1-201ENST00000432048 687 ntBASIC0.67□□□□□ -2.3
RPL28P46779 MTATP6P16-201ENST00000434543 526 ntBASIC0.67□□□□□ -2.3
RPL28P46779 AL606662.1-201ENST00000445763 553 ntBASIC0.67□□□□□ -2.3
RPL28P46779 RPL39P28-201ENST00000465655 155 ntBASIC0.67□□□□□ -2.3
RPL28P46779 AC092944.1-205ENST00000494885 517 ntTSL 4 BASIC0.67□□□□□ -2.3
RPL28P46779 AC093852.1-201ENST00000503587 266 ntBASIC0.67□□□□□ -2.3
RPL28P46779 AC116562.3-201ENST00000506136 177 ntBASIC0.67□□□□□ -2.3
RPL28P46779 AC027335.1-201ENST00000515377 543 ntTSL 4 BASIC0.67□□□□□ -2.3
RPL28P46779 RNU5F-4P-201ENST00000516581 114 ntBASIC0.67□□□□□ -2.3
RPL28P46779 AC068587.5-201ENST00000528506 175 ntBASIC0.67□□□□□ -2.3
RPL28P46779 AC026765.1-201ENST00000547876 435 ntTSL 3 BASIC0.67□□□□□ -2.3
RPL28P46779 HSPE1P4-201ENST00000550617 308 ntBASIC0.67□□□□□ -2.3
RPL28P46779 EIF4A1P12-201ENST00000551910 141 ntBASIC0.67□□□□□ -2.3
RPL28P46779 MTND4P33-201ENST00000556706 766 ntBASIC0.67□□□□□ -2.3
RPL28P46779 AC021231.3-201ENST00000558497 370 ntBASIC0.67□□□□□ -2.3
RPL28P46779 PCMTD1P2-201ENST00000565017 355 ntBASIC0.67□□□□□ -2.3
RPL28P46779 SNORA59B-202ENST00000578183 701 ntBASIC0.67□□□□□ -2.3
RPL28P46779 AP005136.1-201ENST00000579765 429 ntBASIC0.67□□□□□ -2.3
RPL28P46779 NIFKP6-201ENST00000598115 845 ntBASIC0.67□□□□□ -2.3
RPL28P46779 AC078795.3-201ENST00000602913 472 ntBASIC0.67□□□□□ -2.3
RPL28P46779 AC008945.2-201ENST00000606056 604 ntBASIC0.67□□□□□ -2.3
RPL28P46779 BX284668.6-201ENST00000606899 438 ntBASIC0.67□□□□□ -2.3
RPL28P46779 AC004492.1-201ENST00000607036 742 ntBASIC0.67□□□□□ -2.3
RPL28P46779 ST7-OT4_4.1-201ENST00000614993 213 ntBASIC0.67□□□□□ -2.3
RPL28P46779 AC012676.2-201ENST00000619258 186 ntBASIC0.67□□□□□ -2.3
RPL28P46779 AC009878.1-201ENST00000621819 340 ntBASIC0.67□□□□□ -2.3
RPL28P46779 AC138649.3-201ENST00000622154 254 ntBASIC0.67□□□□□ -2.3
RPL28P46779 AL450472.1-202ENST00000637286 180 ntBASIC0.67□□□□□ -2.3
RPL28P46779 AL445984.1-201ENST00000637834 659 ntBASIC0.67□□□□□ -2.3
RPL28P46779 CTDSPL2-202ENST00000558373 4255 ntTSL 1 (best) BASIC0.67□□□□□ -2.3
RPL28P46779 GNPDA2-204ENST00000509756 5382 ntAPPRIS ALT1 TSL 1 (best) BASIC0.66□□□□□ -2.3
RPL28P46779 RNU6-428P-201ENST00000362942 107 ntBASIC0.66□□□□□ -2.3
RPL28P46779 RNU6-501P-201ENST00000364072 100 ntBASIC0.66□□□□□ -2.3
RPL28P46779 RNU6-378P-201ENST00000384324 107 ntBASIC0.66□□□□□ -2.3
RPL28P46779 C5orf58-201ENST00000421269 406 ntAPPRIS ALT2 TSL 2 BASIC0.66□□□□□ -2.3
RPL28P46779 USP9YP14-201ENST00000430663 563 ntBASIC0.66□□□□□ -2.3
RPL28P46779 AL365184.2-201ENST00000431139 435 ntBASIC0.66□□□□□ -2.3
RPL28P46779 SNAP23P1-201ENST00000433229 246 ntBASIC0.66□□□□□ -2.3
RPL28P46779 PLCB1-IT1-201ENST00000441231 373 ntTSL 3 BASIC0.66□□□□□ -2.3
RPL28P46779 AC073910.1-201ENST00000445047 438 ntBASIC0.66□□□□□ -2.3
RPL28P46779 GAPDHP17-201ENST00000449858 1001 ntBASIC0.66□□□□□ -2.3
RPL28P46779 LINC01201-202ENST00000451431 401 ntTSL 3 BASIC0.66□□□□□ -2.3
RPL28P46779 LINC01774-201ENST00000453569 595 ntTSL 2 BASIC0.66□□□□□ -2.3
Retrieved 100 of 98,524 protein–RNA pairs in 99.4 ms