Protein–RNA interactions for Protein: P34896

SHMT1, Serine hydroxymethyltransferase, cytosolic, humanhuman

Predictions only

Length 483 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1P34896 MIR7157-201ENST00000635801 60 ntBASIC2.62□□□□□ -1.99
SHMT1P34896 Z75746.1-201ENST00000440243 2080 ntBASIC2.62□□□□□ -1.99
SHMT1P34896 MAP3K2-203ENST00000409947 10992 ntAPPRIS P1 TSL 1 (best) BASIC2.62□□□□□ -1.99
SHMT1P34896 Z82195.2-201ENST00000612348 18351 ntBASIC2.61□□□□□ -1.99
SHMT1P34896 OR51A4-202ENST00000641898 4393 ntAPPRIS P1 BASIC2.61□□□□□ -1.99
SHMT1P34896 OR56A5-201ENST00000340110 738 ntBASIC2.61□□□□□ -1.99
SHMT1P34896 RNA5SP393-201ENST00000363423 117 ntBASIC2.61□□□□□ -1.99
SHMT1P34896 RNU6-1141P-201ENST00000364520 107 ntBASIC2.61□□□□□ -1.99
SHMT1P34896 SNORA67.3-201ENST00000384366 140 ntBASIC2.61□□□□□ -1.99
SHMT1P34896 Y_RNA.482-201ENST00000384377 111 ntBASIC2.61□□□□□ -1.99
SHMT1P34896 RNU2-41P-201ENST00000410991 178 ntBASIC2.61□□□□□ -1.99
SHMT1P34896 SNRPEP8-201ENST00000442866 260 ntBASIC2.61□□□□□ -1.99
SHMT1P34896 LINC01628-201ENST00000444266 397 ntTSL 2 BASIC2.61□□□□□ -1.99
SHMT1P34896 AC109927.1-202ENST00000511951 282 ntTSL 3 BASIC2.61□□□□□ -1.99
SHMT1P34896 AC126768.3-201ENST00000514519 560 ntTSL 4 BASIC2.61□□□□□ -1.99
SHMT1P34896 COX6CP5-201ENST00000527162 228 ntBASIC2.61□□□□□ -1.99
SHMT1P34896 IMMP1LP2-201ENST00000552954 492 ntBASIC2.61□□□□□ -1.99
SHMT1P34896 AC018904.1-201ENST00000560594 542 ntTSL 3 BASIC2.61□□□□□ -1.99
SHMT1P34896 AC009120.5-201ENST00000561669 475 ntTSL 5 BASIC2.61□□□□□ -1.99
SHMT1P34896 RPS3AP23-202ENST00000574601 686 ntBASIC2.61□□□□□ -1.99
SHMT1P34896 RBBP8-210ENST00000581687 617 ntTSL 2 BASIC2.61□□□□□ -1.99
SHMT1P34896 POLR3GP2-201ENST00000588366 668 ntBASIC2.61□□□□□ -1.99
SHMT1P34896 AC060766.3-201ENST00000591442 263 ntBASIC2.61□□□□□ -1.99
SHMT1P34896 AC113139.1-201ENST00000605049 239 ntBASIC2.61□□□□□ -1.99
SHMT1P34896 AL132765.2-201ENST00000610812 351 ntBASIC2.61□□□□□ -1.99
SHMT1P34896 MIR8076-201ENST00000611401 83 ntBASIC2.61□□□□□ -1.99
SHMT1P34896 AC026523.1-201ENST00000617221 490 ntTSL 5 BASIC2.61□□□□□ -1.99
SHMT1P34896 HOXA11-AS1_4.1-201ENST00000620901 233 ntBASIC2.61□□□□□ -1.99
SHMT1P34896 DNAH7-201ENST00000312428 12394 ntAPPRIS P1 TSL 1 (best) BASIC2.61□□□□□ -1.99
SHMT1P34896 CHD1-201ENST00000284049 6457 ntAPPRIS P1 TSL 1 (best) BASIC2.61□□□□□ -1.99
SHMT1P34896 SEMG1-201ENST00000372781 1662 ntAPPRIS P1 TSL 1 (best) BASIC2.6□□□□□ -1.99
SHMT1P34896 TSLP-202ENST00000379706 2411 ntTSL 1 (best) BASIC2.6□□□□□ -1.99
SHMT1P34896 LINC00645-203ENST00000557399 3512 ntTSL 1 (best) BASIC2.6□□□□□ -1.99
SHMT1P34896 NEB-203ENST00000397345 26202 ntAPPRIS ALT2 TSL 5 BASIC2.6□□□□□ -1.99
SHMT1P34896 NEB-209ENST00000427231 26202 ntAPPRIS ALT2 TSL 5 BASIC2.6□□□□□ -1.99
SHMT1P34896 SNORA25.6-201ENST00000364121 118 ntBASIC2.6□□□□□ -1.99
SHMT1P34896 Y_RNA.356-201ENST00000365475 113 ntBASIC2.6□□□□□ -1.99
SHMT1P34896 RNU6-43P-201ENST00000384302 107 ntBASIC2.6□□□□□ -1.99
SHMT1P34896 Y_RNA.474-201ENST00000384341 102 ntBASIC2.6□□□□□ -1.99
SHMT1P34896 MIR521-1-201ENST00000384902 87 ntBASIC2.6□□□□□ -1.99
SHMT1P34896 RNU6-1140P-201ENST00000410517 106 ntBASIC2.6□□□□□ -1.99
SHMT1P34896 MTND3P9-201ENST00000429526 346 ntBASIC2.6□□□□□ -1.99
SHMT1P34896 MTND3P22-201ENST00000510932 243 ntBASIC2.6□□□□□ -1.99
SHMT1P34896 PTP4A1P4-201ENST00000512479 322 ntBASIC2.6□□□□□ -1.99
SHMT1P34896 ACA59.1-201ENST00000515966 143 ntBASIC2.6□□□□□ -1.99
SHMT1P34896 RNU6ATAC9P-201ENST00000516210 116 ntBASIC2.6□□□□□ -1.99
SHMT1P34896 SCARNA3-201ENST00000517097 143 ntBASIC2.6□□□□□ -1.99
SHMT1P34896 AC115990.1-201ENST00000526957 301 ntBASIC2.6□□□□□ -1.99
SHMT1P34896 LINC02442-201ENST00000537732 343 ntTSL 3 BASIC2.6□□□□□ -1.99
SHMT1P34896 AC018554.1-202ENST00000565133 444 ntTSL 3 BASIC2.6□□□□□ -1.99
SHMT1P34896 AC103810.1-201ENST00000579873 453 ntBASIC2.6□□□□□ -1.99
SHMT1P34896 FGF7P1-201ENST00000582820 288 ntBASIC2.6□□□□□ -1.99
SHMT1P34896 ZNF667-AS1-209ENST00000601875 495 ntTSL 3 BASIC2.6□□□□□ -1.99
SHMT1P34896 AC078795.3-201ENST00000602913 472 ntBASIC2.6□□□□□ -1.99
SHMT1P34896 AC073410.2-201ENST00000603240 332 ntBASIC2.6□□□□□ -1.99
SHMT1P34896 AC009233.1-201ENST00000616477 371 ntBASIC2.6□□□□□ -1.99
SHMT1P34896 HMHB1-202ENST00000638299 126 ntAPPRIS P2 TSL 1 (best) BASIC2.6□□□□□ -1.99
SHMT1P34896 CFH-202ENST00000367429 4127 ntAPPRIS P1 TSL 1 (best) BASIC2.6□□□□□ -1.99
SHMT1P34896 AC135776.4-201ENST00000624300 1904 ntBASIC2.6□□□□□ -1.99
SHMT1P34896 CFHR4-202ENST00000367416 2178 ntAPPRIS P1 TSL 2 BASIC2.59□□□□□ -1.99
SHMT1P34896 SNORD114-1-201ENST00000362705 72 ntBASIC2.59□□□□□ -1.99
SHMT1P34896 SNORD32A-201ENST00000364805 84 ntBASIC2.59□□□□□ -1.99
SHMT1P34896 DEFA7P-201ENST00000382676 285 ntBASIC2.59□□□□□ -1.99
SHMT1P34896 Y_RNA.384-201ENST00000383909 102 ntBASIC2.59□□□□□ -1.99
SHMT1P34896 RNU1-57P-201ENST00000384491 166 ntBASIC2.59□□□□□ -1.99
SHMT1P34896 RNU6-601P-201ENST00000384540 107 ntBASIC2.59□□□□□ -1.99
SHMT1P34896 Y_RNA.529-201ENST00000384586 119 ntBASIC2.59□□□□□ -1.99
SHMT1P34896 MIR1289-2-201ENST00000408360 111 ntBASIC2.59□□□□□ -1.99
SHMT1P34896 RNU6-1328P-201ENST00000410938 106 ntBASIC2.59□□□□□ -1.99
SHMT1P34896 AC083867.1-201ENST00000413567 457 ntTSL 3 BASIC2.59□□□□□ -1.99
SHMT1P34896 CYCSP48-201ENST00000417124 323 ntBASIC2.59□□□□□ -1.99
SHMT1P34896 LINC00459-201ENST00000431656 376 ntTSL 2 BASIC2.59□□□□□ -1.99
SHMT1P34896 RPS15AP7-201ENST00000439294 405 ntBASIC2.59□□□□□ -1.99
SHMT1P34896 AL031659.1-201ENST00000447075 539 ntBASIC2.59□□□□□ -1.99
SHMT1P34896 RPS29P27-201ENST00000463711 170 ntBASIC2.59□□□□□ -1.99
SHMT1P34896 LINC02046-202ENST00000481334 390 ntTSL 3 BASIC2.59□□□□□ -1.99
SHMT1P34896 AC010420.1-201ENST00000515077 509 ntTSL 3 BASIC2.59□□□□□ -1.99
SHMT1P34896 RNU6-1016P-201ENST00000516689 94 ntBASIC2.59□□□□□ -1.99
SHMT1P34896 MIR4446-201ENST00000578505 67 ntBASIC2.59□□□□□ -1.99
SHMT1P34896 AC006504.5-204ENST00000592404 765 ntTSL 3 BASIC2.59□□□□□ -1.99
SHMT1P34896 AL158827.2-201ENST00000602494 330 ntBASIC2.59□□□□□ -1.99
SHMT1P34896 MIR3976-201ENST00000606807 139 ntBASIC2.59□□□□□ -1.99
SHMT1P34896 AL159153.1-201ENST00000619688 317 ntBASIC2.59□□□□□ -1.99
SHMT1P34896 AC009831.4-201ENST00000620744 325 ntBASIC2.59□□□□□ -1.99
SHMT1P34896 AL691447.3-201ENST00000635020 330 ntBASIC2.59□□□□□ -1.99
SHMT1P34896 KNL1-204ENST00000527044 5404 ntTSL 5 BASIC2.59□□□□□ -1.99
SHMT1P34896 SPAM1-206ENST00000460182 2154 ntAPPRIS ALT2 TSL 1 (best) BASIC2.59□□□□□ -2
SHMT1P34896 AC009541.1-201ENST00000438279 2662 ntBASIC2.58□□□□□ -2
SHMT1P34896 NEDD1-204ENST00000457368 3162 ntTSL 2 BASIC2.58□□□□□ -2
SHMT1P34896 RNU6-212P-201ENST00000362642 104 ntBASIC2.58□□□□□ -2
SHMT1P34896 RNU6-529P-201ENST00000363383 104 ntBASIC2.58□□□□□ -2
SHMT1P34896 Y_RNA.387-201ENST00000383918 102 ntBASIC2.58□□□□□ -2
SHMT1P34896 RNU6-306P-201ENST00000384617 107 ntBASIC2.58□□□□□ -2
SHMT1P34896 MIR186-201ENST00000384988 86 ntBASIC2.58□□□□□ -2
SHMT1P34896 TRAJ34-201ENST00000390503 58 ntAPPRIS P1 BASIC2.58□□□□□ -2
SHMT1P34896 BCL2L11-207ENST00000405953 425 ntTSL 1 (best) BASIC2.58□□□□□ -2
SHMT1P34896 U6atac.2-201ENST00000408644 118 ntBASIC2.58□□□□□ -2
SHMT1P34896 RPL23AP95-201ENST00000426806 265 ntBASIC2.58□□□□□ -2
SHMT1P34896 AC078809.1-201ENST00000427601 140 ntBASIC2.58□□□□□ -2
SHMT1P34896 AL133396.1-201ENST00000432048 687 ntBASIC2.58□□□□□ -2
Retrieved 100 of 98,524 protein–RNA pairs in 121.7 ms