Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 Y_RNA.362-201ENST00000365518 110 ntBASIC4.75□□□□□ -1.65
COL9A1P20849 RNU2-32P-201ENST00000411193 191 ntBASIC4.75□□□□□ -1.65
COL9A1P20849 AF064858.2-201ENST00000440714 292 ntTSL 3 BASIC4.75□□□□□ -1.65
COL9A1P20849 RBMY2UP-201ENST00000453474 324 ntBASIC4.75□□□□□ -1.65
COL9A1P20849 RNU6-63P-201ENST00000516690 95 ntBASIC4.75□□□□□ -1.65
COL9A1P20849 LINC01900-203ENST00000585185 393 ntTSL 3 BASIC4.75□□□□□ -1.65
COL9A1P20849 ZNF616-203ENST00000597013 577 ntTSL 4 BASIC4.75□□□□□ -1.65
COL9A1P20849 AL160408.5-201ENST00000607759 526 ntTSL 4 BASIC4.75□□□□□ -1.65
COL9A1P20849 5S_rRNA.11-201ENST00000618635 84 ntBASIC4.75□□□□□ -1.65
COL9A1P20849 AC005086.4-201ENST00000623065 213 ntBASIC4.75□□□□□ -1.65
COL9A1P20849 AK9-202ENST00000355283 2499 ntTSL 1 (best) BASIC4.75□□□□□ -1.65
COL9A1P20849 CEP152-203ENST00000399334 5097 ntAPPRIS P3 TSL 1 (best) BASIC4.75□□□□□ -1.65
COL9A1P20849 PHACTR2-207ENST00000427704 9531 ntAPPRIS ALT2 TSL 1 (best) BASIC4.75□□□□□ -1.65
COL9A1P20849 LINS1-201ENST00000314742 4821 ntAPPRIS P1 TSL 5 BASIC4.75□□□□□ -1.65
COL9A1P20849 FAN1-202ENST00000561594 2738 ntTSL 1 (best) BASIC4.74□□□□□ -1.65
COL9A1P20849 WDR5B-201ENST00000330689 3720 ntAPPRIS P1 BASIC4.74□□□□□ -1.65
COL9A1P20849 NR3C1-206ENST00000424646 4591 ntTSL 1 (best) BASIC4.74□□□□□ -1.65
COL9A1P20849 ENPP2-201ENST00000075322 2651 ntAPPRIS ALT1 TSL 1 (best) BASIC4.74□□□□□ -1.65
COL9A1P20849 RYR3-201ENST00000389232 15552 ntAPPRIS ALT2 TSL 5 BASIC4.74□□□□□ -1.65
COL9A1P20849 NR2C2-213ENST00000617312 8113 ntTSL 1 (best) BASIC4.74□□□□□ -1.65
COL9A1P20849 OR1A1-202ENST00000641322 3743 ntAPPRIS P1 BASIC4.74□□□□□ -1.65
COL9A1P20849 MIR302B-201ENST00000362188 73 ntBASIC4.74□□□□□ -1.65
COL9A1P20849 RNU6-50P-201ENST00000362356 103 ntBASIC4.74□□□□□ -1.65
COL9A1P20849 Y_RNA.93-201ENST00000363066 109 ntBASIC4.74□□□□□ -1.65
COL9A1P20849 Y_RNA.366-201ENST00000365540 102 ntBASIC4.74□□□□□ -1.65
COL9A1P20849 Y_RNA.486-201ENST00000384398 107 ntBASIC4.74□□□□□ -1.65
COL9A1P20849 RN7SKP267-201ENST00000410381 285 ntBASIC4.74□□□□□ -1.65
COL9A1P20849 RNA5SP296-201ENST00000410523 111 ntBASIC4.74□□□□□ -1.65
COL9A1P20849 AL118523.1-201ENST00000444436 480 ntTSL 3 BASIC4.74□□□□□ -1.65
COL9A1P20849 AC245102.2-201ENST00000448956 180 ntBASIC4.74□□□□□ -1.65
COL9A1P20849 AC107297.1-201ENST00000459991 176 ntBASIC4.74□□□□□ -1.65
COL9A1P20849 AC093663.1-201ENST00000497190 394 ntBASIC4.74□□□□□ -1.65
COL9A1P20849 RNU6-65P-201ENST00000516332 98 ntBASIC4.74□□□□□ -1.65
COL9A1P20849 RNA5SP468-201ENST00000516782 93 ntBASIC4.74□□□□□ -1.65
COL9A1P20849 AC068339.1-201ENST00000526965 141 ntBASIC4.74□□□□□ -1.65
COL9A1P20849 TRAV8-5-201ENST00000537369 341 ntBASIC4.74□□□□□ -1.65
COL9A1P20849 MIR5685-201ENST00000579080 79 ntBASIC4.74□□□□□ -1.65
COL9A1P20849 AC090616.3-202ENST00000583346 205 ntTSL 2 BASIC4.74□□□□□ -1.65
COL9A1P20849 AC079466.2-201ENST00000585394 185 ntTSL 5 BASIC4.74□□□□□ -1.65
COL9A1P20849 AC244196.2-201ENST00000621184 411 ntAPPRIS P1 BASIC4.74□□□□□ -1.65
COL9A1P20849 CD80-201ENST00000264246 2725 ntAPPRIS P1 TSL 1 (best) BASIC4.74□□□□□ -1.65
COL9A1P20849 SPART-202ENST00000438666 4789 ntAPPRIS P1 TSL 1 (best) BASIC4.74□□□□□ -1.65
COL9A1P20849 SCEL-202ENST00000377246 3081 ntAPPRIS ALT2 TSL 1 (best) BASIC4.74□□□□□ -1.65
COL9A1P20849 OR14L1P-202ENST00000641545 3009 ntBASIC4.74□□□□□ -1.65
COL9A1P20849 POLK-201ENST00000241436 5911 ntAPPRIS P1 TSL 1 (best) BASIC4.74□□□□□ -1.65
COL9A1P20849 DSC2-202ENST00000280904 12325 ntAPPRIS P1 TSL 1 (best) BASIC4.73□□□□□ -1.65
COL9A1P20849 TBC1D31-206ENST00000518805 2201 ntTSL 2 BASIC4.73□□□□□ -1.65
COL9A1P20849 DCDC1-203ENST00000406071 4758 ntAPPRIS P2 TSL 5 BASIC4.73□□□□□ -1.65
COL9A1P20849 RAPGEF6-210ENST00000512052 3535 ntTSL 2 BASIC4.73□□□□□ -1.65
COL9A1P20849 ADGRG2-203ENST00000356606 4630 ntTSL 1 (best) BASIC4.73□□□□□ -1.65
COL9A1P20849 TRPM3-209ENST00000377110 12258 ntAPPRIS ALT1 TSL 1 (best) BASIC4.73□□□□□ -1.65
COL9A1P20849 Y_RNA.213-201ENST00000364178 111 ntBASIC4.73□□□□□ -1.65
COL9A1P20849 MIR659-201ENST00000384963 97 ntBASIC4.73□□□□□ -1.65
COL9A1P20849 MIR759-201ENST00000390224 91 ntBASIC4.73□□□□□ -1.65
COL9A1P20849 RNU6-221P-201ENST00000459541 99 ntBASIC4.73□□□□□ -1.65
COL9A1P20849 KRTAP13-6P-201ENST00000508999 371 ntBASIC4.73□□□□□ -1.65
COL9A1P20849 MIR3129-201ENST00000581095 76 ntBASIC4.73□□□□□ -1.65
COL9A1P20849 HSPE1P7-201ENST00000604681 321 ntBASIC4.73□□□□□ -1.65
COL9A1P20849 AL121772.2-201ENST00000614331 297 ntBASIC4.73□□□□□ -1.65
COL9A1P20849 U3.53-201ENST00000628922 216 ntBASIC4.73□□□□□ -1.65
COL9A1P20849 AC068544.1-201ENST00000635064 248 ntTSL 5 BASIC4.73□□□□□ -1.65
COL9A1P20849 MIR3202-2-201ENST00000635980 79 ntBASIC4.73□□□□□ -1.65
COL9A1P20849 PLCXD3-201ENST00000328457 7538 ntAPPRIS P1 TSL 5 BASIC4.73□□□□□ -1.65
COL9A1P20849 PLEKHG7-201ENST00000344636 3868 ntTSL 5 BASIC4.73□□□□□ -1.65
COL9A1P20849 CTSV-203ENST00000538255 4322 ntAPPRIS P1 TSL 1 (best) BASIC4.73□□□□□ -1.65
COL9A1P20849 ZNF33A-202ENST00000374618 6122 ntTSL 4 BASIC4.73□□□□□ -1.65
COL9A1P20849 PRTG-201ENST00000389286 11967 ntAPPRIS P1 TSL 1 (best) BASIC4.73□□□□□ -1.65
COL9A1P20849 TMEM154-201ENST00000304385 10698 ntAPPRIS P2 TSL 1 (best) BASIC4.72□□□□□ -1.65
COL9A1P20849 AC015813.1-202ENST00000577267 4056 ntTSL 2 BASIC4.72□□□□□ -1.65
COL9A1P20849 RAD17-203ENST00000345306 2789 ntTSL 1 (best) BASIC4.72□□□□□ -1.65
COL9A1P20849 RPS6KA6-204ENST00000620340 8169 ntTSL 5 BASIC4.72□□□□□ -1.65
COL9A1P20849 SYTL2-217ENST00000528231 3536 ntAPPRIS ALT1 TSL 1 (best) BASIC4.72□□□□□ -1.65
COL9A1P20849 Y_RNA.796-201ENST00000364268 102 ntBASIC4.72□□□□□ -1.65
COL9A1P20849 RNU1-132P-201ENST00000364300 164 ntBASIC4.72□□□□□ -1.65
COL9A1P20849 Y_RNA.799-201ENST00000364992 102 ntBASIC4.72□□□□□ -1.65
COL9A1P20849 RNU6-117P-201ENST00000365415 107 ntBASIC4.72□□□□□ -1.65
COL9A1P20849 AL031121.1-201ENST00000406553 254 ntBASIC4.72□□□□□ -1.65
COL9A1P20849 MIR1283-1-201ENST00000408494 87 ntBASIC4.72□□□□□ -1.65
COL9A1P20849 AC245291.1-201ENST00000419501 328 ntBASIC4.72□□□□□ -1.65
COL9A1P20849 AL445687.1-201ENST00000439946 251 ntBASIC4.72□□□□□ -1.65
COL9A1P20849 AC080013.2-201ENST00000460866 323 ntBASIC4.72□□□□□ -1.65
COL9A1P20849 AC090602.1-201ENST00000469695 252 ntBASIC4.72□□□□□ -1.65
COL9A1P20849 RNU6-904P-201ENST00000516206 101 ntBASIC4.72□□□□□ -1.65
COL9A1P20849 RNU5F-4P-201ENST00000516581 114 ntBASIC4.72□□□□□ -1.65
COL9A1P20849 LINC00944-201ENST00000536517 421 ntTSL 2 BASIC4.72□□□□□ -1.65
COL9A1P20849 HIGD1AP1-201ENST00000550979 275 ntBASIC4.72□□□□□ -1.65
COL9A1P20849 MIR4753-201ENST00000585119 83 ntBASIC4.72□□□□□ -1.65
COL9A1P20849 RDM1-221ENST00000617591 432 ntTSL 1 (best) BASIC4.72□□□□□ -1.65
COL9A1P20849 MIR8059-201ENST00000620427 81 ntBASIC4.72□□□□□ -1.65
COL9A1P20849 AC140113.4-201ENST00000622087 222 ntBASIC4.72□□□□□ -1.65
COL9A1P20849 BMS1P21-201ENST00000634565 365 ntBASIC4.72□□□□□ -1.65
COL9A1P20849 EMSY-205ENST00000524767 4116 ntTSL 1 (best) BASIC4.72□□□□□ -1.65
COL9A1P20849 ZC3H12B-201ENST00000338957 7256 ntAPPRIS P1 TSL 1 (best) BASIC4.72□□□□□ -1.65
COL9A1P20849 GABRG2-224ENST00000640574 3150 ntTSL 5 BASIC4.72□□□□□ -1.65
COL9A1P20849 ORC4-202ENST00000392857 6530 ntAPPRIS P1 TSL 1 (best) BASIC4.72□□□□□ -1.65
COL9A1P20849 AC110597.3-202ENST00000583493 3289 ntTSL 5 BASIC4.71□□□□□ -1.65
COL9A1P20849 ROCK1P1-203ENST00000608049 2457 ntTSL 1 (best) BASIC4.71□□□□□ -1.65
COL9A1P20849 ANK3-201ENST00000280772 16874 ntAPPRIS P3 TSL 1 (best) BASIC4.71□□□□□ -1.66
COL9A1P20849 SETDB2-202ENST00000317257 5619 ntAPPRIS ALT2 TSL 1 (best) BASIC4.71□□□□□ -1.66
COL9A1P20849 IBTK-206ENST00000503631 3560 ntTSL 1 (best) BASIC4.71□□□□□ -1.66
Retrieved 100 of 98,524 protein–RNA pairs in 102.3 ms