Protein–RNA interactions for Protein: P18887

XRCC1, DNA repair protein XRCC1, humanhuman

Predicted RBP Predictions only

Length 633 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
XRCC1P18887 GACAT1-202ENST00000441383 540 ntTSL 4 BASIC1.79□□□□□ -2.12
XRCC1P18887 LINC02264-201ENST00000442020 576 ntTSL 3 BASIC1.79□□□□□ -2.12
XRCC1P18887 HMGN2P23-201ENST00000456759 269 ntBASIC1.79□□□□□ -2.12
XRCC1P18887 PRELID3BP1-201ENST00000457142 540 ntBASIC1.79□□□□□ -2.12
XRCC1P18887 LINC01487-202ENST00000490497 423 ntTSL 3 BASIC1.79□□□□□ -2.12
XRCC1P18887 AC104564.1-201ENST00000493028 407 ntBASIC1.79□□□□□ -2.12
XRCC1P18887 CCDC34P1-201ENST00000507441 517 ntBASIC1.79□□□□□ -2.12
XRCC1P18887 RNA5SP401-201ENST00000515920 127 ntBASIC1.79□□□□□ -2.12
XRCC1P18887 RNU6-189P-201ENST00000516120 101 ntBASIC1.79□□□□□ -2.12
XRCC1P18887 CENPUP1-201ENST00000526649 1202 ntBASIC1.79□□□□□ -2.12
XRCC1P18887 AC103996.1-201ENST00000555468 102 ntBASIC1.79□□□□□ -2.12
XRCC1P18887 MIR4287-201ENST00000579398 78 ntBASIC1.79□□□□□ -2.12
XRCC1P18887 AC025754.2-201ENST00000606491 432 ntBASIC1.79□□□□□ -2.12
XRCC1P18887 AL359314.1-201ENST00000616913 261 ntBASIC1.79□□□□□ -2.12
XRCC1P18887 AC103705.1-201ENST00000619013 241 ntBASIC1.79□□□□□ -2.12
XRCC1P18887 ZEB2_AS1_1.1-201ENST00000621504 128 ntBASIC1.79□□□□□ -2.12
XRCC1P18887 AC124864.2-201ENST00000624736 186 ntBASIC1.79□□□□□ -2.12
XRCC1P18887 MIR6863-201ENST00000636112 90 ntBASIC1.79□□□□□ -2.12
XRCC1P18887 SNORD98-201ENST00000636377 67 ntBASIC1.79□□□□□ -2.12
XRCC1P18887 AC069228.1-201ENST00000546936 1615 ntTSL 3 BASIC1.79□□□□□ -2.12
XRCC1P18887 CYLC2-202ENST00000487798 2053 ntAPPRIS P1 TSL 5 BASIC1.78□□□□□ -2.12
XRCC1P18887 RNA5SP432-201ENST00000362480 116 ntBASIC1.78□□□□□ -2.12
XRCC1P18887 SNORD32A-201ENST00000364805 84 ntBASIC1.78□□□□□ -2.12
XRCC1P18887 SNORD48-201ENST00000364953 64 ntBASIC1.78□□□□□ -2.12
XRCC1P18887 MIR9-3-201ENST00000385084 90 ntBASIC1.78□□□□□ -2.12
XRCC1P18887 MTCO3P40-201ENST00000392516 676 ntBASIC1.78□□□□□ -2.12
XRCC1P18887 FO680682.1-201ENST00000421261 345 ntTSL 3 BASIC1.78□□□□□ -2.12
XRCC1P18887 RPL23AP95-201ENST00000426806 265 ntBASIC1.78□□□□□ -2.12
XRCC1P18887 USP9YP14-201ENST00000430663 563 ntBASIC1.78□□□□□ -2.12
XRCC1P18887 AL512271.1-201ENST00000439878 434 ntTSL 3 BASIC1.78□□□□□ -2.12
XRCC1P18887 AL591501.1-201ENST00000439992 495 ntTSL 5 BASIC1.78□□□□□ -2.12
XRCC1P18887 AC003989.2-201ENST00000440224 169 ntBASIC1.78□□□□□ -2.12
XRCC1P18887 AL136972.1-201ENST00000443471 351 ntTSL 3 BASIC1.78□□□□□ -2.12
XRCC1P18887 TPTE2P5-203ENST00000458118 728 ntBASIC1.78□□□□□ -2.12
XRCC1P18887 AC016632.1-201ENST00000503994 196 ntBASIC1.78□□□□□ -2.12
XRCC1P18887 AC093534.1-201ENST00000504977 132 ntBASIC1.78□□□□□ -2.12
XRCC1P18887 AC087854.1-201ENST00000519706 414 ntBASIC1.78□□□□□ -2.12
XRCC1P18887 HSPE1P4-201ENST00000550617 308 ntBASIC1.78□□□□□ -2.12
XRCC1P18887 TRAV32-201ENST00000553993 340 ntBASIC1.78□□□□□ -2.12
XRCC1P18887 AC007495.2-202ENST00000564102 535 ntTSL 4 BASIC1.78□□□□□ -2.12
XRCC1P18887 MIR3122-201ENST00000577243 73 ntBASIC1.78□□□□□ -2.12
XRCC1P18887 VN1R80P-201ENST00000597126 338 ntBASIC1.78□□□□□ -2.12
XRCC1P18887 AC004908.3-201ENST00000610248 625 ntBASIC1.78□□□□□ -2.12
XRCC1P18887 AC063943.3-201ENST00000615562 356 ntBASIC1.78□□□□□ -2.12
XRCC1P18887 AC005296.1-201ENST00000616145 209 ntBASIC1.78□□□□□ -2.12
XRCC1P18887 OR5AK4P-201ENST00000635912 903 ntBASIC1.78□□□□□ -2.12
XRCC1P18887 LINC00305-201ENST00000323355 873 ntTSL 1 (best) BASIC1.77□□□□□ -2.13
XRCC1P18887 RNU4-15P-201ENST00000362613 141 ntBASIC1.77□□□□□ -2.13
XRCC1P18887 SNORA69-201ENST00000383895 132 ntBASIC1.77□□□□□ -2.13
XRCC1P18887 SNORA26.3-201ENST00000391119 136 ntBASIC1.77□□□□□ -2.13
XRCC1P18887 AL512604.1-201ENST00000404812 257 ntBASIC1.77□□□□□ -2.13
XRCC1P18887 POLHP1-201ENST00000411806 470 ntBASIC1.77□□□□□ -2.13
XRCC1P18887 AL590135.1-201ENST00000422215 156 ntBASIC1.77□□□□□ -2.13
XRCC1P18887 AC019205.3-201ENST00000424573 156 ntBASIC1.77□□□□□ -2.13
XRCC1P18887 AC073325.1-201ENST00000443714 542 ntTSL 4 BASIC1.77□□□□□ -2.13
XRCC1P18887 AC016700.2-201ENST00000446011 156 ntBASIC1.77□□□□□ -2.13
XRCC1P18887 FTH1P25-201ENST00000447665 469 ntBASIC1.77□□□□□ -2.13
XRCC1P18887 RNU6-333P-201ENST00000459117 107 ntBASIC1.77□□□□□ -2.13
XRCC1P18887 AC015911.1-201ENST00000495111 156 ntBASIC1.77□□□□□ -2.13
XRCC1P18887 PTP4A1P4-201ENST00000512479 322 ntBASIC1.77□□□□□ -2.13
XRCC1P18887 AL133279.1-202ENST00000556789 456 ntTSL 5 BASIC1.77□□□□□ -2.13
XRCC1P18887 AC024614.2-201ENST00000577584 372 ntBASIC1.77□□□□□ -2.13
XRCC1P18887 MIR4769-201ENST00000584126 77 ntBASIC1.77□□□□□ -2.13
XRCC1P18887 AP001836.1-201ENST00000604675 523 ntBASIC1.77□□□□□ -2.13
XRCC1P18887 AP000654.2-201ENST00000605633 586 ntBASIC1.77□□□□□ -2.13
XRCC1P18887 AL359880.1-201ENST00000621879 266 ntBASIC1.77□□□□□ -2.13
XRCC1P18887 DEUP1-201ENST00000298050 2664 ntAPPRIS P1 TSL 5 BASIC1.77□□□□□ -2.13
XRCC1P18887 ATF1-201ENST00000262053 2181 ntAPPRIS P1 TSL 1 (best) BASIC1.76□□□□□ -2.13
XRCC1P18887 SNORD32B-201ENST00000364460 84 ntBASIC1.76□□□□□ -2.13
XRCC1P18887 Y_RNA.381-201ENST00000365666 102 ntBASIC1.76□□□□□ -2.13
XRCC1P18887 RNU6-38P-201ENST00000384085 107 ntBASIC1.76□□□□□ -2.13
XRCC1P18887 SNORD14D-201ENST00000384390 87 ntBASIC1.76□□□□□ -2.13
XRCC1P18887 RNU6-482P-201ENST00000391068 107 ntBASIC1.76□□□□□ -2.13
XRCC1P18887 RNA5SP465-201ENST00000391195 109 ntBASIC1.76□□□□□ -2.13
XRCC1P18887 MTCYBP2-201ENST00000407745 171 ntBASIC1.76□□□□□ -2.13
XRCC1P18887 AP000275.1-201ENST00000411943 390 ntBASIC1.76□□□□□ -2.13
XRCC1P18887 AL109924.3-201ENST00000413324 393 ntTSL 2 BASIC1.76□□□□□ -2.13
XRCC1P18887 RPL31P63-201ENST00000422565 375 ntBASIC1.76□□□□□ -2.13
XRCC1P18887 AF124730.1-201ENST00000430001 327 ntTSL 2 BASIC1.76□□□□□ -2.13
XRCC1P18887 LINC01594-201ENST00000445083 611 ntTSL 5 BASIC1.76□□□□□ -2.13
XRCC1P18887 RNU6-1037P-201ENST00000459571 107 ntBASIC1.76□□□□□ -2.13
XRCC1P18887 SNRPGP7-201ENST00000469016 106 ntBASIC1.76□□□□□ -2.13
XRCC1P18887 AC087884.1-201ENST00000469738 328 ntBASIC1.76□□□□□ -2.13
XRCC1P18887 PLS1-AS1-201ENST00000485338 346 ntTSL 3 BASIC1.76□□□□□ -2.13
XRCC1P18887 AC145146.1-201ENST00000496370 254 ntBASIC1.76□□□□□ -2.13
XRCC1P18887 RPL23AP63-201ENST00000498752 471 ntBASIC1.76□□□□□ -2.13
XRCC1P18887 AC009646.1-201ENST00000510455 318 ntBASIC1.76□□□□□ -2.13
XRCC1P18887 AC110009.1-201ENST00000512965 451 ntTSL 5 BASIC1.76□□□□□ -2.13
XRCC1P18887 RNU6-965P-201ENST00000516721 96 ntBASIC1.76□□□□□ -2.13
XRCC1P18887 RNU6-567P-201ENST00000516746 107 ntBASIC1.76□□□□□ -2.13
XRCC1P18887 AC090568.2-205ENST00000518631 576 ntTSL 4 BASIC1.76□□□□□ -2.13
XRCC1P18887 TMCO5B-203ENST00000529623 509 ntTSL 4 BASIC1.76□□□□□ -2.13
XRCC1P18887 LINC01495-202ENST00000534135 343 ntTSL 2 BASIC1.76□□□□□ -2.13
XRCC1P18887 MIR4419B-201ENST00000577260 68 ntBASIC1.76□□□□□ -2.13
XRCC1P18887 MIR3923-201ENST00000579521 83 ntBASIC1.76□□□□□ -2.13
XRCC1P18887 C1orf141-205ENST00000475209 2079 ntAPPRIS ALT2 TSL 5 BASIC1.76□□□□□ -2.13
XRCC1P18887 Y_RNA.99-201ENST00000363138 105 ntBASIC1.75□□□□□ -2.13
XRCC1P18887 RNU4-66P-201ENST00000365199 138 ntBASIC1.75□□□□□ -2.13
XRCC1P18887 Y_RNA.409-201ENST00000383990 98 ntBASIC1.75□□□□□ -2.13
XRCC1P18887 Y_RNA.559-201ENST00000384686 107 ntBASIC1.75□□□□□ -2.13
Retrieved 100 of 98,524 protein–RNA pairs in 134.9 ms