Protein–RNA interactions for Protein: P12109

COL6A1, Collagen alpha-1(VI) chain, humanhuman

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1P12109 SNORA7.4-201ENST00000384249 137 ntBASIC3.64□□□□□ -1.83
COL6A1P12109 RNU6-72P-201ENST00000384285 79 ntBASIC3.64□□□□□ -1.83
COL6A1P12109 Y_RNA.785-201ENST00000384290 109 ntBASIC3.64□□□□□ -1.83
COL6A1P12109 AP000275.1-201ENST00000411943 390 ntBASIC3.64□□□□□ -1.83
COL6A1P12109 BX679664.1-201ENST00000434429 253 ntBASIC3.64□□□□□ -1.83
COL6A1P12109 AL135923.2-201ENST00000435444 501 ntTSL 2 BASIC3.64□□□□□ -1.83
COL6A1P12109 RPL23AP22-201ENST00000437556 453 ntBASIC3.64□□□□□ -1.83
COL6A1P12109 AL139260.1-202ENST00000456813 441 ntTSL 3 BASIC3.64□□□□□ -1.83
COL6A1P12109 AC098869.1-201ENST00000481627 292 ntBASIC3.64□□□□□ -1.83
COL6A1P12109 RPS27P26-201ENST00000494583 239 ntBASIC3.64□□□□□ -1.83
COL6A1P12109 AC010469.2-201ENST00000496412 480 ntBASIC3.64□□□□□ -1.83
COL6A1P12109 AC013799.1-201ENST00000531157 348 ntTSL 2 BASIC3.64□□□□□ -1.83
COL6A1P12109 AP002770.2-201ENST00000543613 532 ntBASIC3.64□□□□□ -1.83
COL6A1P12109 AC008739.2-201ENST00000597006 317 ntBASIC3.64□□□□□ -1.83
COL6A1P12109 AC002064.3-201ENST00000623448 346 ntBASIC3.64□□□□□ -1.83
COL6A1P12109 UBE2E2-207ENST00000628311 267 ntTSL 5 BASIC3.64□□□□□ -1.83
COL6A1P12109 LINC02555-201ENST00000563933 1951 ntBASIC3.63□□□□□ -1.83
COL6A1P12109 Y_RNA.237-201ENST00000364439 102 ntBASIC3.63□□□□□ -1.83
COL6A1P12109 RNU4-9P-201ENST00000364951 139 ntBASIC3.63□□□□□ -1.83
COL6A1P12109 SNORD115-46-201ENST00000390982 71 ntBASIC3.63□□□□□ -1.83
COL6A1P12109 RN7SKP220-201ENST00000410611 288 ntBASIC3.63□□□□□ -1.83
COL6A1P12109 AL353680.1-201ENST00000433788 337 ntTSL 3 BASIC3.63□□□□□ -1.83
COL6A1P12109 RPL26P9-201ENST00000457466 433 ntBASIC3.63□□□□□ -1.83
COL6A1P12109 RPL23AP67-201ENST00000465341 474 ntBASIC3.63□□□□□ -1.83
COL6A1P12109 GZMAP1-201ENST00000503054 631 ntBASIC3.63□□□□□ -1.83
COL6A1P12109 AC022868.1-201ENST00000517767 391 ntBASIC3.63□□□□□ -1.83
COL6A1P12109 CRISPLD1-205ENST00000523524 2100 ntTSL 2 BASIC3.63□□□□□ -1.83
COL6A1P12109 AC009779.6-201ENST00000603972 165 ntBASIC3.63□□□□□ -1.83
COL6A1P12109 AC136601.2-201ENST00000604356 474 ntBASIC3.63□□□□□ -1.83
COL6A1P12109 UCA1.1-201ENST00000620952 75 ntBASIC3.63□□□□□ -1.83
COL6A1P12109 SUGT1-201ENST00000310528 14131 ntAPPRIS P3 TSL 1 (best) BASIC3.63□□□□□ -1.83
COL6A1P12109 DMXL1-201ENST00000311085 11072 ntAPPRIS P1 TSL 1 (best) BASIC3.63□□□□□ -1.83
COL6A1P12109 AC233981.2-201ENST00000611524 1614 ntBASIC3.62□□□□□ -1.83
COL6A1P12109 ACTR6-212ENST00000552376 1659 ntTSL 5 BASIC3.62□□□□□ -1.83
COL6A1P12109 RGPD3-202ENST00000409886 5594 ntAPPRIS P2 TSL 1 (best) BASIC3.62□□□□□ -1.83
COL6A1P12109 RNU6-527P-201ENST00000363425 104 ntBASIC3.62□□□□□ -1.83
COL6A1P12109 RFX3-203ENST00000381984 364 ntTSL 3 BASIC3.62□□□□□ -1.83
COL6A1P12109 RNU6-338P-201ENST00000383888 105 ntBASIC3.62□□□□□ -1.83
COL6A1P12109 MRPL35P1-201ENST00000404272 572 ntBASIC3.62□□□□□ -1.83
COL6A1P12109 U3.37-201ENST00000408528 213 ntBASIC3.62□□□□□ -1.83
COL6A1P12109 AL139281.1-201ENST00000422120 335 ntBASIC3.62□□□□□ -1.83
COL6A1P12109 PIGPP3-201ENST00000425307 415 ntBASIC3.62□□□□□ -1.83
COL6A1P12109 AC010974.1-201ENST00000450509 374 ntTSL 3 BASIC3.62□□□□□ -1.83
COL6A1P12109 LINC02046-202ENST00000481334 390 ntTSL 3 BASIC3.62□□□□□ -1.83
COL6A1P12109 RPL23AP49-201ENST00000492925 468 ntBASIC3.62□□□□□ -1.83
COL6A1P12109 RPS23P5-201ENST00000495419 428 ntBASIC3.62□□□□□ -1.83
COL6A1P12109 AP004607.1-201ENST00000524456 203 ntBASIC3.62□□□□□ -1.83
COL6A1P12109 LINC02253-201ENST00000559321 448 ntTSL 2 BASIC3.62□□□□□ -1.83
COL6A1P12109 CERS3-AS1-201ENST00000560643 372 ntTSL 3 BASIC3.62□□□□□ -1.83
COL6A1P12109 AC092120.1-201ENST00000562211 420 ntTSL 3 BASIC3.62□□□□□ -1.83
COL6A1P12109 AC090510.1-201ENST00000567456 425 ntTSL 3 BASIC3.62□□□□□ -1.83
COL6A1P12109 MIR4300-201ENST00000581016 96 ntBASIC3.62□□□□□ -1.83
COL6A1P12109 AC060766.3-201ENST00000591442 263 ntBASIC3.62□□□□□ -1.83
COL6A1P12109 AC022149.2-201ENST00000621061 203 ntBASIC3.62□□□□□ -1.83
COL6A1P12109 AL807742.1-203ENST00000637444 759 ntTSL 5 BASIC3.62□□□□□ -1.83
COL6A1P12109 ZBBX-201ENST00000307529 3071 ntAPPRIS ALT2 TSL 5 BASIC3.62□□□□□ -1.83
COL6A1P12109 ZBBX-204ENST00000392767 3071 ntAPPRIS ALT2 TSL 5 BASIC3.62□□□□□ -1.83
COL6A1P12109 ERBIN-201ENST00000284037 8647 ntTSL 1 (best) BASIC3.62□□□□□ -1.83
COL6A1P12109 AC009541.1-201ENST00000438279 2662 ntBASIC3.62□□□□□ -1.83
COL6A1P12109 ROCK2-203ENST00000401753 4017 ntTSL 1 (best) BASIC3.62□□□□□ -1.83
COL6A1P12109 ANGPTL1-201ENST00000234816 3348 ntAPPRIS P1 TSL 1 (best) BASIC3.62□□□□□ -1.83
COL6A1P12109 AC017071.1-201ENST00000564407 2204 ntBASIC3.62□□□□□ -1.83
COL6A1P12109 WRN-201ENST00000298139 5215 ntAPPRIS P1 TSL 1 (best) BASIC3.61□□□□□ -1.83
COL6A1P12109 Y_RNA.54-201ENST00000362766 105 ntBASIC3.61□□□□□ -1.83
COL6A1P12109 RNU6-105P-201ENST00000363909 104 ntBASIC3.61□□□□□ -1.83
COL6A1P12109 SNORD78.2-201ENST00000391076 69 ntBASIC3.61□□□□□ -1.83
COL6A1P12109 AL714022.1-201ENST00000439897 151 ntBASIC3.61□□□□□ -1.83
COL6A1P12109 LINC01032-201ENST00000451690 276 ntTSL 5 BASIC3.61□□□□□ -1.83
COL6A1P12109 AL139109.1-201ENST00000455491 297 ntBASIC3.61□□□□□ -1.83
COL6A1P12109 snoU13.30-201ENST00000458951 104 ntBASIC3.61□□□□□ -1.83
COL6A1P12109 AC063944.1-201ENST00000496943 295 ntTSL 3 BASIC3.61□□□□□ -1.83
COL6A1P12109 RNU5B-3P-201ENST00000516601 115 ntBASIC3.61□□□□□ -1.83
COL6A1P12109 SNORA81.3-201ENST00000517283 198 ntBASIC3.61□□□□□ -1.83
COL6A1P12109 DEFB108E-201ENST00000524692 240 ntBASIC3.61□□□□□ -1.83
COL6A1P12109 GTF3AP2-201ENST00000557014 266 ntBASIC3.61□□□□□ -1.83
COL6A1P12109 H3F3AP1-201ENST00000559984 334 ntBASIC3.61□□□□□ -1.83
COL6A1P12109 UBE2Q2P8-201ENST00000560644 102 ntBASIC3.61□□□□□ -1.83
COL6A1P12109 AC026470.2-201ENST00000561492 181 ntBASIC3.61□□□□□ -1.83
COL6A1P12109 AC090617.3-201ENST00000573670 475 ntBASIC3.61□□□□□ -1.83
COL6A1P12109 MIR2682-201ENST00000580305 110 ntBASIC3.61□□□□□ -1.83
COL6A1P12109 FTX_3.1-201ENST00000610451 147 ntBASIC3.61□□□□□ -1.83
COL6A1P12109 AC244205.2-202ENST00000635781 342 ntBASIC3.61□□□□□ -1.83
COL6A1P12109 ZNF266-204ENST00000590306 3317 ntAPPRIS P1 TSL 1 (best) BASIC3.61□□□□□ -1.83
COL6A1P12109 ARHGAP11A-207ENST00000565905 3318 ntTSL 2 BASIC3.6□□□□□ -1.83
COL6A1P12109 KIAA1841-202ENST00000356719 2149 ntTSL 5 BASIC3.6□□□□□ -1.83
COL6A1P12109 snoU2_19.2-201ENST00000363024 80 ntBASIC3.6□□□□□ -1.83
COL6A1P12109 RNU6-968P-201ENST00000384076 107 ntBASIC3.6□□□□□ -1.83
COL6A1P12109 SNORA54-201ENST00000384281 123 ntBASIC3.6□□□□□ -1.83
COL6A1P12109 Y_RNA.555-201ENST00000384673 110 ntBASIC3.6□□□□□ -1.83
COL6A1P12109 MIR215-201ENST00000384858 110 ntBASIC3.6□□□□□ -1.83
COL6A1P12109 HMGN2P30-201ENST00000423237 256 ntBASIC3.6□□□□□ -1.83
COL6A1P12109 AL445259.1-203ENST00000427828 251 ntTSL 3 BASIC3.6□□□□□ -1.83
COL6A1P12109 TOMM22P6-201ENST00000465035 409 ntBASIC3.6□□□□□ -1.83
COL6A1P12109 AC091826.1-201ENST00000514065 313 ntBASIC3.6□□□□□ -1.83
COL6A1P12109 RNU4-71P-201ENST00000516258 113 ntBASIC3.6□□□□□ -1.83
COL6A1P12109 RN7SKP272-201ENST00000516988 232 ntBASIC3.6□□□□□ -1.83
COL6A1P12109 UBL5P2-201ENST00000583788 219 ntBASIC3.6□□□□□ -1.83
COL6A1P12109 AC020895.1-201ENST00000595362 272 ntBASIC3.6□□□□□ -1.83
COL6A1P12109 BX284668.6-201ENST00000606899 438 ntBASIC3.6□□□□□ -1.83
COL6A1P12109 MLF1-203ENST00000392822 2157 ntTSL 5 BASIC3.6□□□□□ -1.83
Retrieved 100 of 98,524 protein–RNA pairs in 97.7 ms