Protein–RNA interactions for Protein: P09016

HOXD4, Homeobox protein Hox-D4, humanhuman

Predicted RBP Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD4P09016 RNY3P1-201ENST00000365085 102 ntBASIC2.14□□□□□ -2.07
HOXD4P09016 RNY3-201ENST00000365484 102 ntBASIC2.14□□□□□ -2.07
HOXD4P09016 DEFB134-201ENST00000382205 314 ntAPPRIS P1 TSL 1 (best) BASIC2.14□□□□□ -2.07
HOXD4P09016 Y_RNA.490-201ENST00000384413 102 ntBASIC2.14□□□□□ -2.07
HOXD4P09016 SNORD116-20-201ENST00000384529 92 ntBASIC2.14□□□□□ -2.07
HOXD4P09016 RNU6-325P-201ENST00000411132 105 ntBASIC2.14□□□□□ -2.07
HOXD4P09016 AL030996.1-201ENST00000411430 235 ntBASIC2.14□□□□□ -2.07
HOXD4P09016 RPL37P10-201ENST00000412884 288 ntBASIC2.14□□□□□ -2.07
HOXD4P09016 AL162400.2-201ENST00000427547 157 ntTSL 3 BASIC2.14□□□□□ -2.07
HOXD4P09016 AL645568.3-201ENST00000433683 316 ntBASIC2.14□□□□□ -2.07
HOXD4P09016 AC108752.1-201ENST00000484679 576 ntTSL 5 BASIC2.14□□□□□ -2.07
HOXD4P09016 AC090255.1-201ENST00000495779 349 ntBASIC2.14□□□□□ -2.07
HOXD4P09016 AKIRIN2P1-201ENST00000505898 352 ntBASIC2.14□□□□□ -2.07
HOXD4P09016 AK3P2-201ENST00000507976 429 ntBASIC2.14□□□□□ -2.07
HOXD4P09016 MTCYBP40-201ENST00000509390 1135 ntBASIC2.14□□□□□ -2.07
HOXD4P09016 AC026436.1-201ENST00000510537 270 ntBASIC2.14□□□□□ -2.07
HOXD4P09016 RNU6-377P-201ENST00000515965 102 ntBASIC2.14□□□□□ -2.07
HOXD4P09016 Y_RNA.675-201ENST00000516389 149 ntBASIC2.14□□□□□ -2.07
HOXD4P09016 ACA59.2-201ENST00000517061 156 ntBASIC2.14□□□□□ -2.07
HOXD4P09016 AC103957.1-201ENST00000517681 503 ntTSL 3 BASIC2.14□□□□□ -2.07
HOXD4P09016 CPSF6-207ENST00000551516 234 ntTSL 2 BASIC2.14□□□□□ -2.07
HOXD4P09016 LINC02386-203ENST00000552182 501 ntTSL 3 BASIC2.14□□□□□ -2.07
HOXD4P09016 BX546450.2-201ENST00000602419 435 ntTSL 5 BASIC2.14□□□□□ -2.07
HOXD4P09016 AC091152.3-201ENST00000604227 325 ntBASIC2.14□□□□□ -2.07
HOXD4P09016 AC113139.1-201ENST00000605049 239 ntBASIC2.14□□□□□ -2.07
HOXD4P09016 AC244517.12-201ENST00000623581 663 ntBASIC2.14□□□□□ -2.07
HOXD4P09016 AC097372.5-201ENST00000623665 376 ntBASIC2.14□□□□□ -2.07
HOXD4P09016 AP000553.5-201ENST00000641933 54 ntBASIC2.14□□□□□ -2.07
HOXD4P09016 AC080128.1-201ENST00000474389 1917 ntBASIC2.14□□□□□ -2.07
HOXD4P09016 OR5K1-202ENST00000642057 3466 ntAPPRIS P1 BASIC2.14□□□□□ -2.07
HOXD4P09016 Y_RNA.67-201ENST00000362870 100 ntBASIC2.13□□□□□ -2.07
HOXD4P09016 RNU6-105P-201ENST00000363909 104 ntBASIC2.13□□□□□ -2.07
HOXD4P09016 RNU6-306P-201ENST00000384617 107 ntBASIC2.13□□□□□ -2.07
HOXD4P09016 FABP5P14-201ENST00000437273 393 ntBASIC2.13□□□□□ -2.07
HOXD4P09016 GHRL-208ENST00000439975 326 ntTSL 1 (best) BASIC2.13□□□□□ -2.07
HOXD4P09016 IPO7P1-201ENST00000442031 636 ntBASIC2.13□□□□□ -2.07
HOXD4P09016 AC116666.1-201ENST00000453915 551 ntTSL 5 BASIC2.13□□□□□ -2.07
HOXD4P09016 AL354824.2-201ENST00000458004 446 ntTSL 3 BASIC2.13□□□□□ -2.07
HOXD4P09016 Y_RNA.635-201ENST00000459041 101 ntBASIC2.13□□□□□ -2.07
HOXD4P09016 MED28P2-201ENST00000475771 317 ntBASIC2.13□□□□□ -2.07
HOXD4P09016 AC018437.1-201ENST00000492214 406 ntBASIC2.13□□□□□ -2.07
HOXD4P09016 CKS1BP7-201ENST00000522230 235 ntBASIC2.13□□□□□ -2.07
HOXD4P09016 TMCO5B-203ENST00000529623 509 ntTSL 4 BASIC2.13□□□□□ -2.07
HOXD4P09016 IMMP1LP2-201ENST00000552954 492 ntBASIC2.13□□□□□ -2.07
HOXD4P09016 AC015712.3-201ENST00000559380 164 ntBASIC2.13□□□□□ -2.07
HOXD4P09016 AC023824.2-201ENST00000566185 400 ntBASIC2.13□□□□□ -2.07
HOXD4P09016 AC105137.2-201ENST00000569073 466 ntBASIC2.13□□□□□ -2.07
HOXD4P09016 MIR5007-201ENST00000583098 95 ntBASIC2.13□□□□□ -2.07
HOXD4P09016 EAF1-AS1-207ENST00000599742 772 ntTSL 5 BASIC2.13□□□□□ -2.07
HOXD4P09016 uc_338.14-201ENST00000613162 166 ntBASIC2.13□□□□□ -2.07
HOXD4P09016 AL161423.1-201ENST00000613700 262 ntBASIC2.13□□□□□ -2.07
HOXD4P09016 MIR6128-201ENST00000615528 109 ntBASIC2.13□□□□□ -2.07
HOXD4P09016 AC138058.1-201ENST00000620572 449 ntTSL 3 BASIC2.13□□□□□ -2.07
HOXD4P09016 IDE-201ENST00000265986 5877 ntAPPRIS P1 TSL 1 (best) BASIC2.13□□□□□ -2.07
HOXD4P09016 TTK-202ENST00000369798 3010 ntAPPRIS P3 TSL 1 (best) BASIC2.12□□□□□ -2.07
HOXD4P09016 MTND4P23-201ENST00000447723 1363 ntBASIC2.12□□□□□ -2.07
HOXD4P09016 AKAP9-203ENST00000359028 12247 ntAPPRIS ALT2 TSL 5 BASIC2.12□□□□□ -2.07
HOXD4P09016 OXR1-209ENST00000517566 4501 ntTSL 1 (best) BASIC2.12□□□□□ -2.07
HOXD4P09016 CALCRL-201ENST00000392370 5155 ntAPPRIS P1 TSL 1 (best) BASIC2.12□□□□□ -2.07
HOXD4P09016 AL596028.1-201ENST00000326971 197 ntBASIC2.12□□□□□ -2.07
HOXD4P09016 RNU4-79P-201ENST00000362764 141 ntBASIC2.12□□□□□ -2.07
HOXD4P09016 RNU6-1317P-201ENST00000364582 104 ntBASIC2.12□□□□□ -2.07
HOXD4P09016 RNU6-601P-201ENST00000384540 107 ntBASIC2.12□□□□□ -2.07
HOXD4P09016 MIR517A-201ENST00000385001 87 ntBASIC2.12□□□□□ -2.07
HOXD4P09016 DEFB130A-201ENST00000400079 240 ntAPPRIS P1 TSL 1 (best) BASIC2.12□□□□□ -2.07
HOXD4P09016 RNU6-1328P-201ENST00000410938 106 ntBASIC2.12□□□□□ -2.07
HOXD4P09016 RNU6-1304P-201ENST00000411374 106 ntBASIC2.12□□□□□ -2.07
HOXD4P09016 PTGES3P4-201ENST00000426243 356 ntBASIC2.12□□□□□ -2.07
HOXD4P09016 NCOA7-AS1-201ENST00000429007 501 ntTSL 3 BASIC2.12□□□□□ -2.07
HOXD4P09016 RPS15AP10-201ENST00000432472 382 ntBASIC2.12□□□□□ -2.07
HOXD4P09016 AC002386.1-201ENST00000436714 398 ntTSL 2 BASIC2.12□□□□□ -2.07
HOXD4P09016 DEFB130B-201ENST00000437818 240 ntAPPRIS P1 TSL 1 (best) BASIC2.12□□□□□ -2.07
HOXD4P09016 LINC01628-201ENST00000444266 397 ntTSL 2 BASIC2.12□□□□□ -2.07
HOXD4P09016 AC006026.2-201ENST00000457376 180 ntBASIC2.12□□□□□ -2.07
HOXD4P09016 RNU6-1037P-201ENST00000459571 107 ntBASIC2.12□□□□□ -2.07
HOXD4P09016 RPL23AP49-201ENST00000492925 468 ntBASIC2.12□□□□□ -2.07
HOXD4P09016 GZMAP1-201ENST00000503054 631 ntBASIC2.12□□□□□ -2.07
HOXD4P09016 AC116337.1-201ENST00000509680 687 ntBASIC2.12□□□□□ -2.07
HOXD4P09016 LNX1-AS1-202ENST00000510785 550 ntTSL 2 BASIC2.12□□□□□ -2.07
HOXD4P09016 AC008869.1-201ENST00000510938 442 ntTSL 2 BASIC2.12□□□□□ -2.07
HOXD4P09016 AC097467.1-201ENST00000513660 370 ntTSL 5 BASIC2.12□□□□□ -2.07
HOXD4P09016 VCAN-AS1-202ENST00000513899 453 ntTSL 3 BASIC2.12□□□□□ -2.07
HOXD4P09016 AC091887.1-201ENST00000514002 439 ntTSL 5 BASIC2.12□□□□□ -2.07
HOXD4P09016 RNU6-559P-201ENST00000516151 98 ntBASIC2.12□□□□□ -2.07
HOXD4P09016 IGHVIII-5-1-201ENST00000523059 99 ntBASIC2.12□□□□□ -2.07
HOXD4P09016 AP003174.2-201ENST00000544663 294 ntTSL 3 BASIC2.12□□□□□ -2.07
HOXD4P09016 CR383656.8-201ENST00000549046 145 ntBASIC2.12□□□□□ -2.07
HOXD4P09016 FRG2DP-202ENST00000566967 323 ntBASIC2.12□□□□□ -2.07
HOXD4P09016 AC015818.4-201ENST00000580931 353 ntTSL 5 BASIC2.12□□□□□ -2.07
HOXD4P09016 AC011825.2-201ENST00000583138 553 ntTSL 4 BASIC2.12□□□□□ -2.07
HOXD4P09016 AC067747.1-201ENST00000608026 250 ntBASIC2.12□□□□□ -2.07
HOXD4P09016 TAS2R13-201ENST00000390677 1637 ntAPPRIS P1 BASIC2.12□□□□□ -2.07
HOXD4P09016 AC069228.1-201ENST00000546936 1615 ntTSL 3 BASIC2.12□□□□□ -2.07
HOXD4P09016 COMMD6-201ENST00000355801 486 ntTSL 2 BASIC2.11□□□□□ -2.07
HOXD4P09016 SNORD56.1-201ENST00000362913 68 ntBASIC2.11□□□□□ -2.07
HOXD4P09016 RNU6-527P-201ENST00000363425 104 ntBASIC2.11□□□□□ -2.07
HOXD4P09016 RNU1-91P-201ENST00000364746 163 ntBASIC2.11□□□□□ -2.07
HOXD4P09016 Y_RNA.387-201ENST00000383918 102 ntBASIC2.11□□□□□ -2.07
HOXD4P09016 Y_RNA.473-201ENST00000384333 102 ntBASIC2.11□□□□□ -2.07
HOXD4P09016 RNU6-1072P-201ENST00000384703 107 ntBASIC2.11□□□□□ -2.07
Retrieved 100 of 98,524 protein–RNA pairs in 142.2 ms