Protein–RNA interactions for Protein: Q9NP79

VTA1, Vacuolar protein sorting-associated protein VTA1 homolog, humanhuman

Predictions only

Length 307 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VTA1Q9NP79 FAM129C-205ENST00000595684 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC21.21■□□□□ 0.99
VTA1Q9NP79 HRK-201ENST00000257572 5789 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
VTA1Q9NP79 WNT5B-203ENST00000537031 1437 ntAPPRIS P1 TSL 2 BASIC21.21■□□□□ 0.99
VTA1Q9NP79 ULK3-217ENST00000568667 1470 ntTSL 5 BASIC21.2■□□□□ 0.98
VTA1Q9NP79 ALDH16A1-202ENST00000455361 2470 ntTSL 2 BASIC21.2■□□□□ 0.98
VTA1Q9NP79 FAM120A-201ENST00000277165 5118 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
VTA1Q9NP79 ZNF707-201ENST00000358656 2183 ntAPPRIS P1 TSL 2 BASIC21.2■□□□□ 0.98
VTA1Q9NP79 HEXIM2-201ENST00000307275 1528 ntAPPRIS P1 TSL 2 BASIC21.2■□□□□ 0.98
VTA1Q9NP79 DEDD2-204ENST00000595337 1894 ntAPPRIS P3 TSL 3 BASIC21.2■□□□□ 0.98
VTA1Q9NP79 CFP-203ENST00000396992 1592 ntAPPRIS P2 TSL 1 (best) BASIC21.2■□□□□ 0.98
VTA1Q9NP79 RABAC1-201ENST00000222008 821 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
VTA1Q9NP79 MRPL20-201ENST00000344843 721 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
VTA1Q9NP79 LINC01534-202ENST00000433232 554 ntTSL 3 BASIC21.2■□□□□ 0.98
VTA1Q9NP79 NAPSB-203ENST00000531692 561 ntTSL 2 BASIC21.2■□□□□ 0.98
VTA1Q9NP79 AC004771.4-201ENST00000576752 474 ntTSL 5 BASIC21.2■□□□□ 0.98
VTA1Q9NP79 IFNL4-202ENST00000616270 1132 ntAPPRIS ALT2 TSL 1 (best) BASIC21.2■□□□□ 0.98
VTA1Q9NP79 MELTF-202ENST00000296351 1650 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
VTA1Q9NP79 MIR4300HG-201ENST00000500502 1397 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
VTA1Q9NP79 DUSP5-201ENST00000369583 2557 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
VTA1Q9NP79 NUDT17-201ENST00000334513 1473 ntAPPRIS P1 TSL 5 BASIC21.2■□□□□ 0.98
VTA1Q9NP79 MAP2K5-202ENST00000340972 1491 ntTSL 2 BASIC21.2■□□□□ 0.98
VTA1Q9NP79 KATNBL1P6-202ENST00000562413 1466 ntBASIC21.2■□□□□ 0.98
VTA1Q9NP79 S1PR5-201ENST00000333430 2341 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
VTA1Q9NP79 PILRB-207ENST00000448382 2314 ntTSL 2 BASIC21.2■□□□□ 0.98
VTA1Q9NP79 PLEKHA8-203ENST00000396259 2840 ntTSL 2 BASIC21.19■□□□□ 0.98
VTA1Q9NP79 CDX4-201ENST00000373514 1515 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
VTA1Q9NP79 AL512353.2-201ENST00000448759 1962 ntBASIC21.19■□□□□ 0.98
VTA1Q9NP79 MIXL1-201ENST00000366810 2005 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
VTA1Q9NP79 CFAP77-203ENST00000393216 1638 ntAPPRIS ALT2 TSL 1 (best) BASIC21.19■□□□□ 0.98
VTA1Q9NP79 ILDR2-207ENST00000529071 2566 ntAPPRIS ALT2 TSL 5 BASIC21.19■□□□□ 0.98
VTA1Q9NP79 KCTD1-202ENST00000408011 2103 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
VTA1Q9NP79 TSSC4-201ENST00000333256 1686 ntAPPRIS P3 TSL 1 (best) BASIC21.19■□□□□ 0.98
VTA1Q9NP79 S100A11-201ENST00000271638 594 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
VTA1Q9NP79 BOLA2B-201ENST00000305321 1012 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
VTA1Q9NP79 BOLA2-201ENST00000330978 1012 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
VTA1Q9NP79 PHOSPHO2-201ENST00000359744 1125 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
VTA1Q9NP79 MRPL43-205ENST00000370234 798 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
VTA1Q9NP79 TSPY8-203ENST00000383005 435 ntTSL 5 BASIC21.19■□□□□ 0.98
VTA1Q9NP79 CYHR1-203ENST00000424149 1162 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
VTA1Q9NP79 SNHG7-203ENST00000436596 509 ntTSL 2 BASIC21.19■□□□□ 0.98
VTA1Q9NP79 DYDC2-206ENST00000444807 1173 ntAPPRIS P3 TSL 3 BASIC21.19■□□□□ 0.98
VTA1Q9NP79 MHENCR-202ENST00000449500 801 ntTSL 2 BASIC21.19■□□□□ 0.98
VTA1Q9NP79 TSSC2-201ENST00000450217 709 ntBASIC21.19■□□□□ 0.98
VTA1Q9NP79 BX276092.5-203ENST00000456199 560 ntBASIC21.19■□□□□ 0.98
VTA1Q9NP79 PRTN3-202ENST00000544537 1036 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
VTA1Q9NP79 AC079385.1-201ENST00000551505 570 ntTSL 4 BASIC21.19■□□□□ 0.98
VTA1Q9NP79 ANKRD34C-AS1-201ENST00000557790 594 ntTSL 3 BASIC21.19■□□□□ 0.98
VTA1Q9NP79 HOXB8-203ENST00000576562 743 ntAPPRIS ALT1 TSL 2 BASIC21.19■□□□□ 0.98
VTA1Q9NP79 IGFLR1-209ENST00000592537 1195 ntAPPRIS P2 TSL 1 (best) BASIC21.19■□□□□ 0.98
VTA1Q9NP79 CADM1-222ENST00000616271 1246 ntTSL 5 BASIC21.19■□□□□ 0.98
VTA1Q9NP79 SPEG-225ENST00000617028 815 ntTSL 5 BASIC21.19■□□□□ 0.98
VTA1Q9NP79 RPLP0-219ENST00000551150 1344 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
VTA1Q9NP79 SUMF2-201ENST00000275607 1894 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
VTA1Q9NP79 TRMU-201ENST00000290846 1940 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
VTA1Q9NP79 YDJC-201ENST00000292778 1351 ntAPPRIS P1 TSL 2 BASIC21.19■□□□□ 0.98
VTA1Q9NP79 ARID3C-201ENST00000378909 1411 ntAPPRIS P1 TSL 2 BASIC21.19■□□□□ 0.98
VTA1Q9NP79 C6orf203-202ENST00000405204 1420 ntAPPRIS P1 TSL 2 BASIC21.19■□□□□ 0.98
VTA1Q9NP79 KRT8P7-201ENST00000533003 1432 ntBASIC21.19■□□□□ 0.98
VTA1Q9NP79 RPRM-201ENST00000325926 1471 ntAPPRIS P1 BASIC21.19■□□□□ 0.98
VTA1Q9NP79 KLHDC1-201ENST00000359332 2691 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
VTA1Q9NP79 RCC2P3-201ENST00000418112 1537 ntBASIC21.19■□□□□ 0.98
VTA1Q9NP79 SMIM3-201ENST00000526627 2332 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
VTA1Q9NP79 HNRNPUL2-201ENST00000301785 5106 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
VTA1Q9NP79 NR5A1-202ENST00000373588 3104 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
VTA1Q9NP79 TMEM104-202ENST00000417024 1781 ntTSL 2 BASIC21.18■□□□□ 0.98
VTA1Q9NP79 ZNF843-203ENST00000618063 1765 ntAPPRIS P2 TSL 1 (best) BASIC21.18■□□□□ 0.98
VTA1Q9NP79 TFAP2A-202ENST00000379608 2576 ntAPPRIS ALT1 TSL 1 (best) BASIC21.18■□□□□ 0.98
VTA1Q9NP79 EFS-203ENST00000429593 2610 ntTSL 2 BASIC21.18■□□□□ 0.98
VTA1Q9NP79 FAM83E-201ENST00000263266 1926 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
VTA1Q9NP79 GPR83-202ENST00000539203 1909 ntTSL 5 BASIC21.18■□□□□ 0.98
VTA1Q9NP79 FUCA1-201ENST00000374479 2047 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
VTA1Q9NP79 DBNL-217ENST00000468694 2068 ntAPPRIS ALT2 TSL 2 BASIC21.18■□□□□ 0.98
VTA1Q9NP79 FAM129C-208ENST00000599164 2073 ntAPPRIS ALT2 TSL 2 BASIC21.18■□□□□ 0.98
VTA1Q9NP79 MEGF6-202ENST00000356575 5455 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
VTA1Q9NP79 ZNF575-201ENST00000314228 1298 ntAPPRIS P1 TSL 2 BASIC21.18■□□□□ 0.98
VTA1Q9NP79 C1QTNF1-205ENST00000578229 1294 ntTSL 4 BASIC21.18■□□□□ 0.98
VTA1Q9NP79 AL136038.4-201ENST00000603606 1261 ntBASIC21.18■□□□□ 0.98
VTA1Q9NP79 AC011247.3-202ENST00000605062 570 ntTSL 4 BASIC21.18■□□□□ 0.98
VTA1Q9NP79 AL691432.3-201ENST00000621860 400 ntBASIC21.18■□□□□ 0.98
VTA1Q9NP79 AC012313.10-201ENST00000623509 926 ntBASIC21.18■□□□□ 0.98
VTA1Q9NP79 PTENP1-AS-201ENST00000627688 873 ntTSL 5 BASIC21.18■□□□□ 0.98
VTA1Q9NP79 TMPRSS5-212ENST00000545579 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC21.18■□□□□ 0.98
VTA1Q9NP79 AL035252.2-201ENST00000454676 3168 ntTSL 2 BASIC21.18■□□□□ 0.98
VTA1Q9NP79 AC016734.2-201ENST00000624325 1377 ntBASIC21.18■□□□□ 0.98
VTA1Q9NP79 NPNT-214ENST00000514622 2362 ntTSL 2 BASIC21.18■□□□□ 0.98
VTA1Q9NP79 ACY1-201ENST00000404366 1473 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
VTA1Q9NP79 EMX1-202ENST00000394111 1528 ntTSL 3 BASIC21.18■□□□□ 0.98
VTA1Q9NP79 ACTR5-201ENST00000243903 2565 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
VTA1Q9NP79 AL162741.1-201ENST00000565563 1558 ntBASIC21.18■□□□□ 0.98
VTA1Q9NP79 COL23A1-201ENST00000390654 3061 ntAPPRIS P2 TSL 5 BASIC21.18■□□□□ 0.98
VTA1Q9NP79 EARS2-210ENST00000564501 2027 ntTSL 5 BASIC21.17■□□□□ 0.98
VTA1Q9NP79 FARSA-207ENST00000588025 2057 ntTSL 5 BASIC21.17■□□□□ 0.98
VTA1Q9NP79 SLC6A18-201ENST00000324642 2121 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
VTA1Q9NP79 LIMS2-207ENST00000409808 2315 ntAPPRIS ALT1 TSL 5 BASIC21.17■□□□□ 0.98
VTA1Q9NP79 INAFM2-202ENST00000638170 3052 ntAPPRIS P1 BASIC21.17■□□□□ 0.98
VTA1Q9NP79 LRIG1-201ENST00000273261 5273 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
VTA1Q9NP79 FIBP-202ENST00000357519 1248 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
VTA1Q9NP79 ACY1-210ENST00000494103 1298 ntTSL 3 BASIC21.17■□□□□ 0.98
VTA1Q9NP79 AC125616.1-201ENST00000540369 1015 ntTSL 3 BASIC21.17■□□□□ 0.98
VTA1Q9NP79 CLDN7-204ENST00000571881 735 ntTSL 3 BASIC21.17■□□□□ 0.98
Retrieved 100 of 98,524 protein–RNA pairs in 25 ms