Protein–RNA interactions for Protein: Q8NF91

SYNE1, Nesprin-1, humanhuman

Known RBP Predictions only

Length 8,797 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1Q8NF91 ZNRF2-201ENST00000323037 3460 ntAPPRIS P1 TSL 1 (best) BASIC5.84□□□□□ -1.47
SYNE1Q8NF91 C22orf39-205ENST00000542103 1523 ntTSL 1 (best) BASIC5.84□□□□□ -1.47
SYNE1Q8NF91 E4F1-204ENST00000564139 2493 ntTSL 1 (best) BASIC5.84□□□□□ -1.47
SYNE1Q8NF91 ATP6AP1-201ENST00000369762 2099 ntAPPRIS P1 TSL 1 (best) BASIC5.84□□□□□ -1.47
SYNE1Q8NF91 IMPDH1-208ENST00000470772 1888 ntAPPRIS ALT1 TSL 5 BASIC5.84□□□□□ -1.47
SYNE1Q8NF91 ANKRD29-201ENST00000322980 1658 ntTSL 2 BASIC5.84□□□□□ -1.47
SYNE1Q8NF91 RAB6A-207ENST00000541588 758 ntTSL 1 (best) BASIC5.84□□□□□ -1.47
SYNE1Q8NF91 KLC1-206ENST00000389744 3250 ntTSL 1 (best) BASIC5.84□□□□□ -1.47
SYNE1Q8NF91 MEGF6-201ENST00000294599 4501 ntTSL 1 (best) BASIC5.84□□□□□ -1.47
SYNE1Q8NF91 SLC35A3-222ENST00000640715 1989 ntTSL 5 BASIC5.84□□□□□ -1.47
SYNE1Q8NF91 KANSL1-218ENST00000638275 5352 ntTSL 5 BASIC5.84□□□□□ -1.47
SYNE1Q8NF91 COG8-206ENST00000306875 4247 ntAPPRIS P1 TSL 1 (best) BASIC5.84□□□□□ -1.47
SYNE1Q8NF91 AKT1-211ENST00000554848 1595 ntAPPRIS P1 TSL 1 (best) BASIC5.84□□□□□ -1.47
SYNE1Q8NF91 FAM214B-206ENST00000603301 3256 ntAPPRIS P1 TSL 1 (best) BASIC5.84□□□□□ -1.47
SYNE1Q8NF91 UBL4A-202ENST00000369660 2382 ntAPPRIS P1 TSL 1 (best) BASIC5.84□□□□□ -1.47
SYNE1Q8NF91 AC138696.1-201ENST00000522452 2897 ntAPPRIS P1 TSL 1 (best) BASIC5.84□□□□□ -1.47
SYNE1Q8NF91 SRRD-201ENST00000215917 4020 ntAPPRIS P1 TSL 1 (best) BASIC5.84□□□□□ -1.47
SYNE1Q8NF91 SGPP1-201ENST00000247225 3312 ntAPPRIS P1 TSL 1 (best) BASIC5.84□□□□□ -1.47
SYNE1Q8NF91 PTGES2-214ENST00000617202 1344 ntTSL 5 BASIC5.84□□□□□ -1.47
SYNE1Q8NF91 ARSE-205ENST00000540563 1990 ntTSL 2 BASIC5.84□□□□□ -1.47
SYNE1Q8NF91 BBS5-202ENST00000392663 3107 ntTSL 1 (best) BASIC5.84□□□□□ -1.47
SYNE1Q8NF91 TK2-207ENST00000544898 3441 ntAPPRIS P3 TSL 1 (best) BASIC5.84□□□□□ -1.47
SYNE1Q8NF91 JPT1-203ENST00000409753 1605 ntAPPRIS P1 TSL 1 (best) BASIC5.84□□□□□ -1.47
SYNE1Q8NF91 CAMK2B-216ENST00000440254 2097 ntAPPRIS P4 TSL 1 (best) BASIC5.84□□□□□ -1.47
SYNE1Q8NF91 TLCD1-201ENST00000292090 1017 ntAPPRIS P1 TSL 1 (best) BASIC5.84□□□□□ -1.47
SYNE1Q8NF91 TRPT1-203ENST00000394547 865 ntTSL 1 (best) BASIC5.84□□□□□ -1.47
SYNE1Q8NF91 CD70-202ENST00000423145 881 ntTSL 2 BASIC5.84□□□□□ -1.47
SYNE1Q8NF91 SIGLEC15-202ENST00000546268 1054 ntTSL 2 BASIC5.84□□□□□ -1.47
SYNE1Q8NF91 GSTZ1-204ENST00000393734 1424 ntTSL 5 BASIC5.84□□□□□ -1.47
SYNE1Q8NF91 ACY1-206ENST00000476351 1409 ntTSL 3 BASIC5.84□□□□□ -1.47
SYNE1Q8NF91 SLC35A2-217ENST00000635589 1424 ntTSL 2 BASIC5.84□□□□□ -1.47
SYNE1Q8NF91 PRELID3A-201ENST00000336990 1715 ntAPPRIS P1 TSL 2 BASIC5.84□□□□□ -1.47
SYNE1Q8NF91 PRELID3A-202ENST00000440960 1716 ntAPPRIS P1 TSL 1 (best) BASIC5.84□□□□□ -1.47
SYNE1Q8NF91 TCP11-202ENST00000311875 2166 ntAPPRIS ALT2 TSL 1 (best) BASIC5.84□□□□□ -1.47
SYNE1Q8NF91 PDP1-208ENST00000520728 2554 ntAPPRIS P3 TSL 1 (best) BASIC5.84□□□□□ -1.47
SYNE1Q8NF91 C17orf62-204ENST00000437807 2242 ntAPPRIS P1 TSL 2 BASIC5.84□□□□□ -1.47
SYNE1Q8NF91 HAGHL-203ENST00000389703 1347 ntAPPRIS P1 TSL 1 (best) BASIC5.84□□□□□ -1.47
SYNE1Q8NF91 NDUFB9-206ENST00000522532 1319 ntTSL 2 BASIC5.84□□□□□ -1.47
SYNE1Q8NF91 KREMEN2-201ENST00000303746 2326 ntAPPRIS P4 TSL 1 (best) BASIC5.84□□□□□ -1.47
SYNE1Q8NF91 DUSP1-201ENST00000239223 2019 ntAPPRIS P1 TSL 1 (best) BASIC5.84□□□□□ -1.47
SYNE1Q8NF91 ASCL5-201ENST00000449188 2026 ntAPPRIS P1 TSL 3 BASIC5.84□□□□□ -1.47
SYNE1Q8NF91 PCDH7-206ENST00000543491 4457 ntAPPRIS ALT2 BASIC5.84□□□□□ -1.47
SYNE1Q8NF91 ADM-206ENST00000528655 1889 ntAPPRIS P1 TSL 1 (best) BASIC5.84□□□□□ -1.47
SYNE1Q8NF91 DNM1-206ENST00000475805 2710 ntAPPRIS ALT1 TSL 2 BASIC5.84□□□□□ -1.47
SYNE1Q8NF91 ADGRD1-AS1-202ENST00000542980 1277 ntTSL 4 BASIC5.84□□□□□ -1.47
SYNE1Q8NF91 C2orf69P3-201ENST00000565542 1120 ntBASIC5.84□□□□□ -1.47
SYNE1Q8NF91 CYGB-204ENST00000589342 815 ntTSL 3 BASIC5.84□□□□□ -1.47
SYNE1Q8NF91 FP565260.3-205ENST00000620481 816 ntTSL 5 BASIC5.84□□□□□ -1.47
SYNE1Q8NF91 R3HDM2-204ENST00000402412 4372 ntAPPRIS ALT2 TSL 1 (best) BASIC5.84□□□□□ -1.47
SYNE1Q8NF91 NR1H2-204ENST00000593926 1828 ntAPPRIS P2 TSL 5 BASIC5.84□□□□□ -1.47
SYNE1Q8NF91 SHF-201ENST00000290894 2500 ntAPPRIS P3 TSL 2 BASIC5.84□□□□□ -1.47
SYNE1Q8NF91 DNAJB5-201ENST00000312316 2391 ntAPPRIS P1 TSL 1 (best) BASIC5.84□□□□□ -1.47
SYNE1Q8NF91 ZBED3-AS1-208ENST00000512001 1668 ntTSL 3 BASIC5.84□□□□□ -1.47
SYNE1Q8NF91 WNT7B-204ENST00000410089 2202 ntTSL 5 BASIC5.84□□□□□ -1.47
SYNE1Q8NF91 AP006587.1-201ENST00000534129 1502 ntBASIC5.84□□□□□ -1.47
SYNE1Q8NF91 KCNIP2-207ENST00000358038 2489 ntAPPRIS ALT1 TSL 1 (best) BASIC5.84□□□□□ -1.47
SYNE1Q8NF91 ULK1-201ENST00000321867 5310 ntAPPRIS P1 TSL 1 (best) BASIC5.84□□□□□ -1.47
SYNE1Q8NF91 PPP1R18-205ENST00000615527 4597 ntAPPRIS P1 TSL 1 (best) BASIC5.84□□□□□ -1.47
SYNE1Q8NF91 OLFM1-205ENST00000371796 2492 ntTSL 2 BASIC5.84□□□□□ -1.47
SYNE1Q8NF91 PLCB1-204ENST00000404098 1260 ntTSL 3 BASIC5.84□□□□□ -1.47
SYNE1Q8NF91 HSD11B1L-205ENST00000422535 730 ntTSL 1 (best) BASIC5.84□□□□□ -1.47
SYNE1Q8NF91 CUTA-210ENST00000488034 769 ntAPPRIS ALT1 TSL 2 BASIC5.84□□□□□ -1.47
SYNE1Q8NF91 SLC25A1P4-201ENST00000567977 778 ntBASIC5.84□□□□□ -1.47
SYNE1Q8NF91 TPGS2-221ENST00000614939 1268 ntTSL 4 BASIC5.84□□□□□ -1.47
SYNE1Q8NF91 PRLHR-202ENST00000636925 1275 ntAPPRIS P1 BASIC5.84□□□□□ -1.47
SYNE1Q8NF91 FAM228A-201ENST00000295150 1774 ntAPPRIS P2 TSL 1 (best) BASIC5.84□□□□□ -1.47
SYNE1Q8NF91 MKNK2-201ENST00000250896 3774 ntAPPRIS P4 TSL 5 BASIC5.84□□□□□ -1.47
SYNE1Q8NF91 PPM1B-204ENST00000378551 3877 ntAPPRIS ALT1 TSL 1 (best) BASIC5.84□□□□□ -1.47
SYNE1Q8NF91 TBL1Y-201ENST00000346432 2312 ntAPPRIS P1 TSL 1 (best) BASIC5.84□□□□□ -1.47
SYNE1Q8NF91 EPN2-201ENST00000314728 4871 ntAPPRIS P4 TSL 1 (best) BASIC5.84□□□□□ -1.47
SYNE1Q8NF91 TSGA10IP-203ENST00000532620 1925 ntAPPRIS P1 TSL 1 (best) BASIC5.84□□□□□ -1.47
SYNE1Q8NF91 DBN1-201ENST00000292385 3072 ntAPPRIS P4 TSL 1 (best) BASIC5.84□□□□□ -1.47
SYNE1Q8NF91 AC139491.1-201ENST00000512675 1516 ntTSL 1 (best) BASIC5.84□□□□□ -1.47
SYNE1Q8NF91 NCF1B-202ENST00000432102 930 ntTSL 2 BASIC5.84□□□□□ -1.47
SYNE1Q8NF91 NME6-209ENST00000442597 757 ntAPPRIS P1 TSL 1 (best) BASIC5.84□□□□□ -1.47
SYNE1Q8NF91 CCDC124-201ENST00000445755 938 ntAPPRIS P1 TSL 2 BASIC5.84□□□□□ -1.47
SYNE1Q8NF91 STAC3-202ENST00000546246 1014 ntTSL 2 BASIC5.84□□□□□ -1.47
SYNE1Q8NF91 CCDC124-203ENST00000597436 1055 ntAPPRIS P1 TSL 1 (best) BASIC5.84□□□□□ -1.47
SYNE1Q8NF91 RAD23A-203ENST00000586534 1746 ntAPPRIS P3 TSL 1 (best) BASIC5.84□□□□□ -1.47
SYNE1Q8NF91 BTD-202ENST00000383778 2261 ntAPPRIS ALT2 TSL 2 BASIC5.84□□□□□ -1.47
SYNE1Q8NF91 BCAP29-202ENST00000379117 1946 ntAPPRIS P1 TSL 5 BASIC5.84□□□□□ -1.47
SYNE1Q8NF91 VWA1-203ENST00000476993 4511 ntAPPRIS P1 TSL 1 (best) BASIC5.84□□□□□ -1.47
SYNE1Q8NF91 NRN1-203ENST00000616243 1556 ntAPPRIS P1 TSL 4 BASIC5.84□□□□□ -1.47
SYNE1Q8NF91 TCF4-201ENST00000354452 3482 ntAPPRIS ALT1 TSL 5 BASIC5.84□□□□□ -1.47
SYNE1Q8NF91 SLC16A3-201ENST00000392339 2074 ntAPPRIS P1 TSL 5 BASIC5.84□□□□□ -1.48
SYNE1Q8NF91 SLC16A3-202ENST00000392341 2086 ntAPPRIS P1 TSL 5 BASIC5.84□□□□□ -1.48
SYNE1Q8NF91 GUCA1B-201ENST00000230361 1113 ntAPPRIS P1 TSL 1 (best) BASIC5.84□□□□□ -1.48
SYNE1Q8NF91 FAM86EP-206ENST00000510506 987 ntBASIC5.84□□□□□ -1.48
SYNE1Q8NF91 DCTN5-208ENST00000568589 772 ntTSL 2 BASIC5.84□□□□□ -1.48
SYNE1Q8NF91 AP005263.1-201ENST00000579126 914 ntTSL 2 BASIC5.84□□□□□ -1.48
SYNE1Q8NF91 AC011298.2-201ENST00000617989 482 ntBASIC5.84□□□□□ -1.48
SYNE1Q8NF91 TMC5-202ENST00000381414 4755 ntTSL 1 (best) BASIC5.84□□□□□ -1.48
SYNE1Q8NF91 ARNT-202ENST00000358595 4887 ntAPPRIS P3 TSL 1 (best) BASIC5.84□□□□□ -1.48
SYNE1Q8NF91 DTNBP1-203ENST00000355917 1359 ntTSL 5 BASIC5.84□□□□□ -1.48
SYNE1Q8NF91 USP35-203ENST00000529308 4216 ntAPPRIS P1 TSL 5 BASIC5.84□□□□□ -1.48
SYNE1Q8NF91 ALDH1A2-201ENST00000249750 4098 ntAPPRIS P1 TSL 1 (best) BASIC5.84□□□□□ -1.48
SYNE1Q8NF91 ZBTB46-203ENST00000395104 5198 ntAPPRIS P1 TSL 2 BASIC5.84□□□□□ -1.48
SYNE1Q8NF91 TRPV3-209ENST00000576742 2766 ntAPPRIS P3 TSL 1 (best) BASIC5.84□□□□□ -1.48
SYNE1Q8NF91 ZNF326-202ENST00000361911 1538 ntTSL 1 (best) BASIC5.84□□□□□ -1.48
SYNE1Q8NF91 NRM-203ENST00000376421 1734 ntAPPRIS P2 TSL 1 (best) BASIC5.84□□□□□ -1.48
Retrieved 100 of 98,524 protein–RNA pairs in 29.2 ms