Protein–RNA interactions for Protein: P67809

YBX1, Nuclease-sensitive element-binding protein 1, humanhuman

Known RBP Predictions only

Length 324 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
YBX1P67809 ABI3-202ENST00000419580 1718 ntAPPRIS P1 TSL 5 BASIC18.51■□□□□ 0.55
YBX1P67809 GUCY1A2-201ENST00000282249 3047 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
YBX1P67809 PNPLA2-201ENST00000336615 2428 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
YBX1P67809 PPP1R3F-202ENST00000376188 2443 ntTSL 2 BASIC18.51■□□□□ 0.55
YBX1P67809 C1orf210-202ENST00000523677 1478 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
YBX1P67809 TMEM8B-204ENST00000439587 2150 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
YBX1P67809 FAM131A-204ENST00000418281 1664 ntTSL 5 BASIC18.5■□□□□ 0.55
YBX1P67809 MCU-202ENST00000373053 2949 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
YBX1P67809 XKR6-203ENST00000416569 3382 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
YBX1P67809 GOSR2-210ENST00000576910 1891 ntAPPRIS ALT1 TSL 5 BASIC18.5■□□□□ 0.55
YBX1P67809 KCNK12-201ENST00000327876 6227 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
YBX1P67809 PSMD3-201ENST00000264639 2158 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
YBX1P67809 LINC01819-201ENST00000422351 2156 ntTSL 5 BASIC18.5■□□□□ 0.55
YBX1P67809 RELA-202ENST00000406246 2700 ntAPPRIS P3 TSL 1 (best) BASIC18.5■□□□□ 0.55
YBX1P67809 PALM3-201ENST00000340790 2262 ntAPPRIS P2 TSL 5 BASIC18.5■□□□□ 0.55
YBX1P67809 TSPAN14-205ENST00000372158 1095 ntAPPRIS P1 TSL 5 BASIC18.5■□□□□ 0.55
YBX1P67809 CXADR-204ENST00000400166 1080 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
YBX1P67809 HDAC11-203ENST00000402271 1018 ntTSL 3 BASIC18.5■□□□□ 0.55
YBX1P67809 RAMP1-204ENST00000409726 734 ntTSL 3 BASIC18.5■□□□□ 0.55
YBX1P67809 DHDH-203ENST00000522614 776 ntTSL 5 BASIC18.5■□□□□ 0.55
YBX1P67809 C12orf76-208ENST00000551185 496 ntTSL 2 BASIC18.5■□□□□ 0.55
YBX1P67809 AC100839.1-201ENST00000559589 577 ntTSL 4 BASIC18.5■□□□□ 0.55
YBX1P67809 AC011298.2-201ENST00000617989 482 ntBASIC18.5■□□□□ 0.55
YBX1P67809 FOXI3-201ENST00000428390 2804 ntAPPRIS P1 TSL 3 BASIC18.5■□□□□ 0.55
YBX1P67809 DCAF4-201ENST00000353777 1940 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
YBX1P67809 WNK1-203ENST00000447667 1902 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
YBX1P67809 EDA-208ENST00000524573 1381 ntAPPRIS ALT1 TSL 1 (best) BASIC18.5■□□□□ 0.55
YBX1P67809 SERGEF-201ENST00000265965 1566 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
YBX1P67809 CHD1L-204ENST00000431239 2907 ntTSL 5 BASIC18.5■□□□□ 0.55
YBX1P67809 GOSR2-226ENST00000639287 2367 ntTSL 5 BASIC18.49■□□□□ 0.55
YBX1P67809 RPS6KA2-201ENST00000265678 5824 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
YBX1P67809 HCK-206ENST00000518730 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC18.49■□□□□ 0.55
YBX1P67809 MEGF6-202ENST00000356575 5455 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
YBX1P67809 PRSS3-201ENST00000342836 1144 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
YBX1P67809 BX322234.1-201ENST00000444188 980 ntTSL 3 BASIC18.49■□□□□ 0.55
YBX1P67809 AMN1-211ENST00000541931 880 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
YBX1P67809 STAC3-202ENST00000546246 1014 ntTSL 2 BASIC18.49■□□□□ 0.55
YBX1P67809 TNFRSF12A-206ENST00000575124 1133 ntTSL 2 BASIC18.49■□□□□ 0.55
YBX1P67809 MIR4785-201ENST00000585005 73 ntBASIC18.49■□□□□ 0.55
YBX1P67809 ZNF561-AS1-202ENST00000586614 568 ntTSL 5 BASIC18.49■□□□□ 0.55
YBX1P67809 UBL5-202ENST00000586895 432 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
YBX1P67809 AL590094.1-202ENST00000634619 1131 ntTSL 5 BASIC18.49■□□□□ 0.55
YBX1P67809 AC079598.2-202ENST00000546624 1451 ntBASIC18.49■□□□□ 0.55
YBX1P67809 CFAP100-203ENST00000505024 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC18.49■□□□□ 0.55
YBX1P67809 MZF1-206ENST00000599369 2587 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
YBX1P67809 VOPP1-201ENST00000285279 2962 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
YBX1P67809 ASAP2-202ENST00000315273 5582 ntAPPRIS ALT2 TSL 1 (best) BASIC18.49■□□□□ 0.55
YBX1P67809 CCDC17-202ENST00000421127 2216 ntAPPRIS ALT2 TSL 2 BASIC18.49■□□□□ 0.55
YBX1P67809 CPEB2-207ENST00000507071 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC18.49■□□□□ 0.55
YBX1P67809 COPS7A-204ENST00000534947 2034 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
YBX1P67809 UPP1-201ENST00000331803 1932 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
YBX1P67809 CTBP2-214ENST00000531469 1918 ntAPPRIS P1 TSL 2 BASIC18.49■□□□□ 0.55
YBX1P67809 AC109460.3-201ENST00000569969 5296 ntTSL 2 BASIC18.49■□□□□ 0.55
YBX1P67809 KTI12-201ENST00000371614 1714 ntAPPRIS P1 BASIC18.49■□□□□ 0.55
YBX1P67809 YPEL5-205ENST00000402708 1735 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
YBX1P67809 ACAA1-201ENST00000301810 1540 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
YBX1P67809 SH3RF3-201ENST00000309415 5803 ntAPPRIS P1 TSL 5 BASIC18.48■□□□□ 0.55
YBX1P67809 ATRIP-201ENST00000320211 2590 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
YBX1P67809 B4GALT4-202ENST00000393765 2459 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
YBX1P67809 ICA1-206ENST00000402384 2458 ntAPPRIS P3 TSL 2 BASIC18.48■□□□□ 0.55
YBX1P67809 FP475955.4-201ENST00000623131 1990 ntBASIC18.48■□□□□ 0.55
YBX1P67809 WDR34-201ENST00000372715 1755 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
YBX1P67809 SLC25A39-202ENST00000377095 1565 ntAPPRIS ALT1 TSL 1 (best) BASIC18.48■□□□□ 0.55
YBX1P67809 SNX19-209ENST00000530356 1562 ntTSL 2 BASIC18.48■□□□□ 0.55
YBX1P67809 KRT86-202ENST00000423955 2217 ntAPPRIS P1 TSL 2 BASIC18.48■□□□□ 0.55
YBX1P67809 MTSS1L-204ENST00000616026 2241 ntAPPRIS ALT2 TSL 5 BASIC18.48■□□□□ 0.55
YBX1P67809 TCTEX1D2-201ENST00000325318 673 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
YBX1P67809 WNT8B-201ENST00000343737 2112 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
YBX1P67809 FAM26F-202ENST00000368605 1117 ntAPPRIS P1 TSL 5 BASIC18.48■□□□□ 0.55
YBX1P67809 PLPP7-201ENST00000372261 972 ntTSL 2 BASIC18.48■□□□□ 0.55
YBX1P67809 MDK-205ENST00000405308 1166 ntAPPRIS P2 TSL 2 BASIC18.48■□□□□ 0.55
YBX1P67809 AC004951.3-201ENST00000418645 1148 ntBASIC18.48■□□□□ 0.55
YBX1P67809 LINC00620-201ENST00000419618 996 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
YBX1P67809 ASPHD1-203ENST00000483405 1115 ntAPPRIS ALT2 TSL 3 BASIC18.48■□□□□ 0.55
YBX1P67809 FDX2-206ENST00000492239 773 ntTSL 2 BASIC18.48■□□□□ 0.55
YBX1P67809 AC134349.1-201ENST00000543969 385 ntTSL 3 BASIC18.48■□□□□ 0.55
YBX1P67809 LINC02256-201ENST00000561999 366 ntTSL 3 BASIC18.48■□□□□ 0.55
YBX1P67809 AC026271.3-201ENST00000571884 352 ntBASIC18.48■□□□□ 0.55
YBX1P67809 C15orf56-202ENST00000623360 2129 ntTSL 2 BASIC18.48■□□□□ 0.55
YBX1P67809 CROCCP2-205ENST00000639481 1296 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
YBX1P67809 PODXL2-201ENST00000342480 2186 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
YBX1P67809 PLAUR-203ENST00000340093 1548 ntAPPRIS P3 TSL 1 (best) BASIC18.48■□□□□ 0.55
YBX1P67809 IMMP2L-202ENST00000405709 1522 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
YBX1P67809 SLC35E2-201ENST00000246421 1430 ntAPPRIS P3 TSL 1 (best) BASIC18.48■□□□□ 0.55
YBX1P67809 SUMF2-202ENST00000342190 1876 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
YBX1P67809 TEPSIN-213ENST00000637944 1782 ntAPPRIS ALT2 TSL 5 BASIC18.47■□□□□ 0.55
YBX1P67809 FAM57A-201ENST00000301324 2013 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
YBX1P67809 PDZD7-201ENST00000370215 2032 ntTSL 2 BASIC18.47■□□□□ 0.55
YBX1P67809 IL6R-208ENST00000622330 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC18.47■□□□□ 0.55
YBX1P67809 PRSS50-202ENST00000315170 1372 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
YBX1P67809 RENBP-202ENST00000393700 1388 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
YBX1P67809 PRMT5-204ENST00000397441 2418 ntTSL 2 BASIC18.47■□□□□ 0.55
YBX1P67809 SBK1-201ENST00000341901 4992 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
YBX1P67809 CENPA-201ENST00000233505 1299 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
YBX1P67809 RAC3-201ENST00000306897 1090 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
YBX1P67809 HOXA9-202ENST00000396345 797 ntTSL 2 BASIC18.47■□□□□ 0.55
YBX1P67809 DERL1-203ENST00000419562 918 ntTSL 2 BASIC18.47■□□□□ 0.55
YBX1P67809 RBM17P1-201ENST00000453646 1190 ntBASIC18.47■□□□□ 0.55
YBX1P67809 CHAC1-203ENST00000487220 853 ntTSL 3 BASIC18.47■□□□□ 0.55
YBX1P67809 PACRGL-207ENST00000502938 810 ntTSL 4 BASIC18.47■□□□□ 0.55
Retrieved 100 of 98,524 protein–RNA pairs in 45.6 ms