Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 ATP1B1-202ENST00000367816 2608 ntAPPRIS P1 TSL 5 BASIC14.25□□□□□ -0.13
FOXA3P55318 TNIP1-221ENST00000610874 2629 ntTSL 5 BASIC14.25□□□□□ -0.13
FOXA3P55318 EGFR-202ENST00000342916 2239 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
FOXA3P55318 BCS1L-201ENST00000359273 1454 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
FOXA3P55318 AC073592.3-201ENST00000625118 1834 ntBASIC14.25□□□□□ -0.13
FOXA3P55318 HHATL-201ENST00000310417 1750 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
FOXA3P55318 PTGIR-201ENST00000291294 2107 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
FOXA3P55318 RNF166-203ENST00000541206 2419 ntTSL 2 BASIC14.24□□□□□ -0.13
FOXA3P55318 ORAI2-205ENST00000478730 5531 ntAPPRIS P1 TSL 2 BASIC14.24□□□□□ -0.13
FOXA3P55318 C4orf50-202ENST00000531445 6860 ntAPPRIS P5 TSL 5 BASIC14.24□□□□□ -0.13
FOXA3P55318 PLCD3-212ENST00000619929 6107 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
FOXA3P55318 UBE2R2-201ENST00000263228 4075 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
FOXA3P55318 SLC25A46-201ENST00000355943 2385 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
FOXA3P55318 HCLS1-201ENST00000314583 2000 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
FOXA3P55318 RNF187-201ENST00000305943 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC14.24□□□□□ -0.13
FOXA3P55318 PLA2G12A-201ENST00000243501 5226 ntAPPRIS P2 TSL 1 (best) BASIC14.24□□□□□ -0.13
FOXA3P55318 CNOT9-209ENST00000627282 1621 ntTSL 2 BASIC14.24□□□□□ -0.13
FOXA3P55318 JSRP1-201ENST00000300961 1138 ntAPPRIS P1 TSL 2 BASIC14.24□□□□□ -0.13
FOXA3P55318 RAP1B-202ENST00000341355 714 ntAPPRIS P1 TSL 3 BASIC14.24□□□□□ -0.13
FOXA3P55318 PRSS3-202ENST00000361005 966 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
FOXA3P55318 BCKDHB-203ENST00000369760 743 ntTSL 3 BASIC14.24□□□□□ -0.13
FOXA3P55318 NAT16-202ENST00000443096 1286 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
FOXA3P55318 YBX1P1-201ENST00000445822 960 ntBASIC14.24□□□□□ -0.13
FOXA3P55318 AC093627.4-202ENST00000479592 591 ntTSL 4 BASIC14.24□□□□□ -0.13
FOXA3P55318 POLE4-205ENST00000483063 1248 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
FOXA3P55318 WWTR1-AS1-203ENST00000495094 975 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
FOXA3P55318 TESC-206ENST00000541210 936 ntTSL 3 BASIC14.24□□□□□ -0.13
FOXA3P55318 C19orf84-201ENST00000570516 788 ntAPPRIS ALT2 TSL 1 (best) BASIC14.24□□□□□ -0.13
FOXA3P55318 TFG-210ENST00000620299 1289 ntTSL 5 BASIC14.24□□□□□ -0.13
FOXA3P55318 RAB11FIP5-205ENST00000486777 6120 ntTSL 5 BASIC14.24□□□□□ -0.13
FOXA3P55318 FDXR-202ENST00000413947 1809 ntTSL 2 BASIC14.24□□□□□ -0.13
FOXA3P55318 BAIAP2L2-202ENST00000381669 2146 ntAPPRIS P2 TSL 1 (best) BASIC14.24□□□□□ -0.13
FOXA3P55318 RNFT2-204ENST00000407967 2415 ntTSL 5 BASIC14.24□□□□□ -0.13
FOXA3P55318 TMEM198-201ENST00000344458 2393 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
FOXA3P55318 PRRT2-212ENST00000636619 2065 ntTSL 5 BASIC14.24□□□□□ -0.13
FOXA3P55318 RHBDD3-201ENST00000216085 1794 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
FOXA3P55318 CDK6-202ENST00000424848 1465 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
FOXA3P55318 IL17RC-206ENST00000416074 2342 ntAPPRIS ALT2 TSL 1 (best) BASIC14.24□□□□□ -0.13
FOXA3P55318 ISLR2-202ENST00000419208 2306 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
FOXA3P55318 TCTN1-225ENST00000551590 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC14.24□□□□□ -0.13
FOXA3P55318 FGF17-202ENST00000518533 1706 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
FOXA3P55318 ANO7L1-203ENST00000602586 1720 ntBASIC14.24□□□□□ -0.13
FOXA3P55318 PRKAR1B-204ENST00000406797 2553 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
FOXA3P55318 RFXANK-201ENST00000303088 1407 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
FOXA3P55318 TRPV4-208ENST00000544971 2295 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
FOXA3P55318 NOS3-210ENST00000484524 2537 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
FOXA3P55318 TJP1-212ENST00000614355 6977 ntAPPRIS ALT2 TSL 5 BASIC14.23□□□□□ -0.13
FOXA3P55318 IL15-201ENST00000296545 2472 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
FOXA3P55318 FIBIN-201ENST00000318627 1938 ntAPPRIS P1 BASIC14.23□□□□□ -0.13
FOXA3P55318 ARNTL-205ENST00000403510 2745 ntTSL 2 BASIC14.23□□□□□ -0.13
FOXA3P55318 STRADB-202ENST00000392249 2190 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
FOXA3P55318 FASTK-217ENST00000540185 1609 ntTSL 5 BASIC14.23□□□□□ -0.13
FOXA3P55318 DDX31-201ENST00000310532 2408 ntTSL 2 BASIC14.23□□□□□ -0.13
FOXA3P55318 FAM46A-201ENST00000320172 5609 ntAPPRIS P2 TSL 1 (best) BASIC14.23□□□□□ -0.13
FOXA3P55318 WBP2-219ENST00000626827 1867 ntTSL 5 BASIC14.23□□□□□ -0.13
FOXA3P55318 OTOP2-201ENST00000331427 2147 ntAPPRIS P1 TSL 5 BASIC14.23□□□□□ -0.13
FOXA3P55318 CENPH-206ENST00000515001 1305 ntTSL 2 BASIC14.23□□□□□ -0.13
FOXA3P55318 PPAN-P2RY11-201ENST00000393796 2385 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
FOXA3P55318 WDR41-208ENST00000507029 1553 ntTSL 2 BASIC14.23□□□□□ -0.13
FOXA3P55318 CAMKK2-206ENST00000402834 2051 ntAPPRIS P4 TSL 1 (best) BASIC14.23□□□□□ -0.13
FOXA3P55318 ACTR8-202ENST00000482349 2091 ntTSL 2 BASIC14.23□□□□□ -0.13
FOXA3P55318 PABPC1L-202ENST00000217074 1263 ntTSL 5 BASIC14.23□□□□□ -0.13
FOXA3P55318 CDKN2D-201ENST00000335766 1086 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
FOXA3P55318 RBP4-201ENST00000371464 1068 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
FOXA3P55318 PBX1-209ENST00000485769 834 ntTSL 2 BASIC14.23□□□□□ -0.13
FOXA3P55318 AC093762.3-201ENST00000641918 318 ntAPPRIS P1 BASIC14.23□□□□□ -0.13
FOXA3P55318 CD72-201ENST00000259633 1548 ntAPPRIS P2 TSL 1 (best) BASIC14.23□□□□□ -0.13
FOXA3P55318 CCNA1-202ENST00000440264 1758 ntAPPRIS P1 TSL 2 BASIC14.23□□□□□ -0.13
FOXA3P55318 PCOLCE-AS1-201ENST00000442166 2537 ntTSL 2 BASIC14.23□□□□□ -0.13
FOXA3P55318 RNF103-201ENST00000237455 3477 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
FOXA3P55318 CFAP100-203ENST00000505024 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC14.23□□□□□ -0.13
FOXA3P55318 AC018553.1-201ENST00000616682 1458 ntBASIC14.23□□□□□ -0.13
FOXA3P55318 NPEPL1-204ENST00000525967 1917 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
FOXA3P55318 CSRNP1-201ENST00000273153 3148 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
FOXA3P55318 FADS1-204ENST00000433932 1690 ntTSL 2 BASIC14.23□□□□□ -0.13
FOXA3P55318 DBNDD2-203ENST00000372710 1417 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
FOXA3P55318 POMT1-208ENST00000423007 3320 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
FOXA3P55318 ALDH4A1-201ENST00000290597 2124 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
FOXA3P55318 BCAR1-201ENST00000162330 3221 ntAPPRIS P3 TSL 1 (best) BASIC14.22□□□□□ -0.13
FOXA3P55318 TLE4-206ENST00000376552 3695 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
FOXA3P55318 ST6GALNAC6-201ENST00000291839 2280 ntAPPRIS P3 TSL 1 (best) BASIC14.22□□□□□ -0.13
FOXA3P55318 AC008060.1-201ENST00000401499 1551 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
FOXA3P55318 LIFR-202ENST00000453190 4253 ntAPPRIS P1 TSL 2 BASIC14.22□□□□□ -0.13
FOXA3P55318 KMT5A-202ENST00000402868 3140 ntAPPRIS P2 TSL 1 (best) BASIC14.22□□□□□ -0.13
FOXA3P55318 THOC3-208ENST00000513482 1796 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
FOXA3P55318 PEX11G-203ENST00000593942 1345 ntTSL 5 BASIC14.22□□□□□ -0.13
FOXA3P55318 RAB40C-205ENST00000539661 2609 ntAPPRIS P1 TSL 3 BASIC14.22□□□□□ -0.13
FOXA3P55318 BSCL2-207ENST00000407022 1516 ntAPPRIS P3 TSL 1 (best) BASIC14.22□□□□□ -0.13
FOXA3P55318 PRORSD1P-202ENST00000563365 2154 ntBASIC14.22□□□□□ -0.13
FOXA3P55318 FBXL15-201ENST00000224862 2362 ntAPPRIS P2 TSL 1 (best) BASIC14.22□□□□□ -0.13
FOXA3P55318 GDF5OS-201ENST00000374375 1734 ntAPPRIS P1 TSL 2 BASIC14.22□□□□□ -0.13
FOXA3P55318 ABHD14A-ACY1-202ENST00000463937 1705 ntAPPRIS ALT2 TSL 5 BASIC14.22□□□□□ -0.13
FOXA3P55318 SPAG1-206ENST00000520643 1723 ntTSL 2 BASIC14.22□□□□□ -0.13
FOXA3P55318 TTC22-201ENST00000371274 2149 ntTSL 2 BASIC14.22□□□□□ -0.13
FOXA3P55318 TMEM54-202ENST00000373463 999 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
FOXA3P55318 DCLK1-203ENST00000379892 2101 ntTSL 5 BASIC14.22□□□□□ -0.13
FOXA3P55318 ASMT-202ENST00000381233 989 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
FOXA3P55318 ZNF292-204ENST00000392985 1096 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
FOXA3P55318 NGEF-203ENST00000409079 1022 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
FOXA3P55318 AC027612.3-201ENST00000413684 1047 ntBASIC14.22□□□□□ -0.13
Retrieved 100 of 98,524 protein–RNA pairs in 34.8 ms