Protein–RNA interactions for Protein: P49711

CTCF, Transcriptional repressor CTCF, humanhuman

Predicted RBP Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTCFP49711 CHRDL2-203ENST00000376332 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC21.94■■□□□ 1.1
CTCFP49711 PRMT2-210ENST00000458387 1874 ntTSL 1 (best) BASIC21.94■■□□□ 1.1
CTCFP49711 OSR1-201ENST00000272223 1936 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
CTCFP49711 PALM-207ENST00000590161 2137 ntTSL 4 BASIC21.94■■□□□ 1.1
CTCFP49711 CLEC1B-201ENST00000298527 952 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
CTCFP49711 DYNLL1-203ENST00000392509 814 ntAPPRIS P1 TSL 3 BASIC21.94■■□□□ 1.1
CTCFP49711 FAM3A-205ENST00000393572 1041 ntTSL 2 BASIC21.94■■□□□ 1.1
CTCFP49711 YBX2P1-201ENST00000394192 760 ntBASIC21.94■■□□□ 1.1
CTCFP49711 POLR2M-203ENST00000464277 910 ntTSL 1 (best) BASIC21.94■■□□□ 1.1
CTCFP49711 HOXB-AS2-201ENST00000464382 845 ntTSL 4 BASIC21.94■■□□□ 1.1
CTCFP49711 AC092718.3-202ENST00000564536 1032 ntAPPRIS P5 TSL 5 BASIC21.94■■□□□ 1.1
CTCFP49711 SPINT1-AS1-203ENST00000565315 629 ntTSL 2 BASIC21.94■■□□□ 1.1
CTCFP49711 ZNF667-AS1-206ENST00000591797 535 ntTSL 5 BASIC21.94■■□□□ 1.1
CTCFP49711 RUNX3-202ENST00000338888 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC21.94■■□□□ 1.1
CTCFP49711 UBC-206ENST00000538617 1303 ntTSL 5 BASIC21.94■■□□□ 1.1
CTCFP49711 AC140125.2-201ENST00000502515 1517 ntTSL 1 (best) BASIC21.94■■□□□ 1.1
CTCFP49711 Z83836.1-201ENST00000624605 1642 ntBASIC21.94■■□□□ 1.1
CTCFP49711 PRELID3A-201ENST00000336990 1715 ntAPPRIS P1 TSL 2 BASIC21.94■■□□□ 1.1
CTCFP49711 PRELID3A-202ENST00000440960 1716 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
CTCFP49711 CDV3-201ENST00000264993 3307 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
CTCFP49711 FAM102B-201ENST00000370035 5600 ntAPPRIS P2 TSL 1 (best) BASIC21.93■■□□□ 1.1
CTCFP49711 FKBP3-201ENST00000216330 1684 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
CTCFP49711 RFXAP-201ENST00000255476 2304 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
CTCFP49711 CIB3-201ENST00000269878 711 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
CTCFP49711 CD151-201ENST00000322008 1548 ntAPPRIS P2 TSL 1 (best) BASIC21.93■■□□□ 1.1
CTCFP49711 GPANK1-201ENST00000375893 1598 ntAPPRIS P1 TSL 5 BASIC21.93■■□□□ 1.1
CTCFP49711 C7orf50-203ENST00000397100 1264 ntAPPRIS P2 TSL 3 BASIC21.93■■□□□ 1.1
CTCFP49711 RHOA-202ENST00000418115 2031 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
CTCFP49711 CCDC188-201ENST00000439765 1475 ntAPPRIS P1 TSL 5 BASIC21.93■■□□□ 1.1
CTCFP49711 STXBP2-203ENST00000441779 1914 ntTSL 2 BASIC21.93■■□□□ 1.1
CTCFP49711 FEM1AP4-201ENST00000443167 1987 ntBASIC21.93■■□□□ 1.1
CTCFP49711 TXNRD2-212ENST00000485358 850 ntTSL 2 BASIC21.93■■□□□ 1.1
CTCFP49711 ANKRD13D-218ENST00000515828 1111 ntTSL 1 (best) BASIC21.93■■□□□ 1.1
CTCFP49711 OGFOD2-224ENST00000545612 1465 ntTSL 2 BASIC21.93■■□□□ 1.1
CTCFP49711 RBFADN-201ENST00000562391 1350 ntTSL 1 (best) BASIC21.93■■□□□ 1.1
CTCFP49711 LAT-209ENST00000564277 921 ntAPPRIS ALT2 TSL 5 BASIC21.93■■□□□ 1.1
CTCFP49711 AC012615.3-201ENST00000592884 500 ntTSL 3 BASIC21.93■■□□□ 1.1
CTCFP49711 DNASE1L2-206ENST00000613572 1260 ntAPPRIS P1 TSL 5 BASIC21.93■■□□□ 1.1
CTCFP49711 TMEM179-206ENST00000616017 1645 ntBASIC21.93■■□□□ 1.1
CTCFP49711 GPSM1-206ENST00000616132 2270 ntTSL 1 (best) BASIC21.93■■□□□ 1.1
CTCFP49711 C1QL3-202ENST00000619991 783 ntTSL 1 (best) BASIC21.93■■□□□ 1.1
CTCFP49711 AP000662.2-202ENST00000530595 2790 ntTSL 2 BASIC21.93■■□□□ 1.1
CTCFP49711 RELA-201ENST00000308639 2681 ntAPPRIS ALT1 TSL 1 (best) BASIC21.93■■□□□ 1.1
CTCFP49711 FRMD3-204ENST00000376438 2198 ntTSL 2 BASIC21.92■■□□□ 1.1
CTCFP49711 NKX6-1-202ENST00000515820 2194 ntTSL 3 BASIC21.92■■□□□ 1.1
CTCFP49711 CKMT1A-202ENST00000413453 1911 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
CTCFP49711 LMAN2-201ENST00000303127 1800 ntAPPRIS P2 TSL 1 (best) BASIC21.92■■□□□ 1.1
CTCFP49711 GNG4-203ENST00000391854 5104 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
CTCFP49711 AC062028.1-203ENST00000447433 1472 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
CTCFP49711 PRMT2-201ENST00000291705 1011 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
CTCFP49711 ATP6V0C-201ENST00000330398 1175 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
CTCFP49711 MED15P5-201ENST00000423150 992 ntBASIC21.92■■□□□ 1.1
CTCFP49711 AL049569.1-201ENST00000446261 636 ntTSL 3 BASIC21.92■■□□□ 1.1
CTCFP49711 DNAJB3-202ENST00000449667 1266 ntBASIC21.92■■□□□ 1.1
CTCFP49711 AC018712.1-201ENST00000455767 687 ntBASIC21.92■■□□□ 1.1
CTCFP49711 BOC-211ENST00000484034 1286 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
CTCFP49711 RFPL4AP1-201ENST00000530883 850 ntBASIC21.92■■□□□ 1.1
CTCFP49711 AC021739.5-201ENST00000558637 494 ntTSL 3 BASIC21.92■■□□□ 1.1
CTCFP49711 SETD6-202ENST00000310682 2042 ntAPPRIS P3 TSL 2 BASIC21.92■■□□□ 1.1
CTCFP49711 PHOX2B-201ENST00000226382 3030 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
CTCFP49711 SYT7-201ENST00000263846 4854 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
CTCFP49711 CIZ1-203ENST00000357558 2907 ntAPPRIS ALT2 TSL 5 BASIC21.92■■□□□ 1.1
CTCFP49711 ZNF446-208ENST00000622313 1884 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
CTCFP49711 PPP1R12B-212ENST00000480184 1808 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
CTCFP49711 GABBR1-202ENST00000376977 1739 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
CTCFP49711 DAZAP2-201ENST00000412716 2598 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
CTCFP49711 ANKRD29-201ENST00000322980 1658 ntTSL 2 BASIC21.91■■□□□ 1.1
CTCFP49711 CYP46A1-202ENST00000380228 1597 ntTSL 2 BASIC21.91■■□□□ 1.1
CTCFP49711 ZNF331-202ENST00000411977 2248 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
CTCFP49711 VIPR2-202ENST00000377633 1491 ntTSL 2 BASIC21.91■■□□□ 1.1
CTCFP49711 DOCK5-208ENST00000481100 2166 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
CTCFP49711 NRXN2-203ENST00000377551 6373 ntAPPRIS P3 TSL 1 (best) BASIC21.91■■□□□ 1.1
CTCFP49711 ISCA2-201ENST00000298818 851 ntTSL 5 BASIC21.91■■□□□ 1.1
CTCFP49711 RBCK1-206ENST00000400247 790 ntTSL 2 BASIC21.91■■□□□ 1.1
CTCFP49711 AL135791.1-201ENST00000429214 826 ntTSL 5 BASIC21.91■■□□□ 1.1
CTCFP49711 NMU-202ENST00000505262 693 ntTSL 3 BASIC21.91■■□□□ 1.1
CTCFP49711 REXO2-206ENST00000539275 710 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
CTCFP49711 MRPL21-208ENST00000567045 932 ntTSL 2 BASIC21.91■■□□□ 1.1
CTCFP49711 PRSS8-206ENST00000568261 1214 ntTSL 2 BASIC21.91■■□□□ 1.1
CTCFP49711 HSP90B1-211ENST00000640977 1127 ntTSL 5 BASIC21.91■■□□□ 1.1
CTCFP49711 SUMF2-202ENST00000342190 1876 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
CTCFP49711 BCKDK-201ENST00000219794 2128 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
CTCFP49711 TERF2IP-201ENST00000300086 2118 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
CTCFP49711 P4HB-203ENST00000439918 1502 ntTSL 5 BASIC21.9■■□□□ 1.1
CTCFP49711 AGMAT-201ENST00000375826 2500 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
CTCFP49711 ACTG1-201ENST00000331925 1994 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
CTCFP49711 MPZ-206ENST00000533357 1955 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
CTCFP49711 ILDR1-203ENST00000393631 1456 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
CTCFP49711 ST8SIA5-202ENST00000536490 1499 ntTSL 2 BASIC21.9■■□□□ 1.1
CTCFP49711 ARPP19-201ENST00000249822 5301 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
CTCFP49711 LAT-204ENST00000395461 1448 ntAPPRIS ALT2 TSL 1 (best) BASIC21.9■■□□□ 1.1
CTCFP49711 ARFIP2-203ENST00000423813 1430 ntTSL 2 BASIC21.9■■□□□ 1.1
CTCFP49711 ST3GAL4-204ENST00000444328 1812 ntAPPRIS ALT1 TSL 5 BASIC21.9■■□□□ 1.1
CTCFP49711 FAM213A-202ENST00000372185 1723 ntTSL 2 BASIC21.9■■□□□ 1.1
CTCFP49711 ZNF467-201ENST00000302017 2553 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
CTCFP49711 DUSP5-201ENST00000369583 2557 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
CTCFP49711 SCT-201ENST00000176195 366 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
CTCFP49711 RGS20-202ENST00000297313 2104 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
CTCFP49711 IMP4-203ENST00000409935 958 ntTSL 5 BASIC21.9■■□□□ 1.1
CTCFP49711 GLT1D1-204ENST00000442111 2995 ntAPPRIS P1 TSL 5 BASIC21.9■■□□□ 1.1
Retrieved 100 of 98,524 protein–RNA pairs in 22.3 ms