Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 KLHL26-205ENST00000599006 989 ntTSL 5 BASIC17.84■□□□□ 0.45
SOX3P41225 KANK3-205ENST00000610351 1191 ntTSL 5 BASIC17.84■□□□□ 0.45
SOX3P41225 FLYWCH1-201ENST00000253928 5037 ntAPPRIS ALT2 TSL 1 (best) BASIC17.84■□□□□ 0.45
SOX3P41225 ABCB9-202ENST00000344275 2394 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
SOX3P41225 LDLRAD4-211ENST00000587757 2171 ntTSL 2 BASIC17.84■□□□□ 0.45
SOX3P41225 RNF114-201ENST00000244061 2503 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
SOX3P41225 WWOX-205ENST00000539474 1670 ntTSL 5 BASIC17.83■□□□□ 0.45
SOX3P41225 PSPC1-201ENST00000338910 2407 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
SOX3P41225 NOM1-201ENST00000275820 6077 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
SOX3P41225 AC005082.1-201ENST00000413042 2259 ntBASIC17.83■□□□□ 0.45
SOX3P41225 UBE2Q2-208ENST00000569423 2969 ntTSL 2 BASIC17.83■□□□□ 0.45
SOX3P41225 TMEM234-203ENST00000373593 1411 ntTSL 1 (best) BASIC17.83■□□□□ 0.45
SOX3P41225 CDK18-217ENST00000506784 2143 ntTSL 1 (best) BASIC17.83■□□□□ 0.45
SOX3P41225 ASCC2-202ENST00000397771 2823 ntAPPRIS P1 TSL 5 BASIC17.83■□□□□ 0.45
SOX3P41225 ZBTB10-205ENST00000610895 2833 ntAPPRIS ALT2 TSL 2 BASIC17.83■□□□□ 0.45
SOX3P41225 SLC35E4-201ENST00000343605 2714 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
SOX3P41225 PHLDB3-201ENST00000292140 2591 ntAPPRIS P1 TSL 5 BASIC17.83■□□□□ 0.44
SOX3P41225 RXFP4-201ENST00000368318 1240 ntAPPRIS P1 BASIC17.83■□□□□ 0.44
SOX3P41225 AC087499.1-201ENST00000418141 1075 ntBASIC17.83■□□□□ 0.44
SOX3P41225 HIGD1A-204ENST00000452906 585 ntTSL 2 BASIC17.83■□□□□ 0.44
SOX3P41225 ANK1-211ENST00000522231 1060 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
SOX3P41225 ANK1-212ENST00000522543 1160 ntTSL 2 BASIC17.83■□□□□ 0.44
SOX3P41225 ALKAL1-202ENST00000523939 536 ntAPPRIS ALT2 TSL 1 (best) BASIC17.83■□□□□ 0.44
SOX3P41225 EIF2AK4-209ENST00000560648 687 ntTSL 3 BASIC17.83■□□□□ 0.44
SOX3P41225 AP005263.1-201ENST00000579126 914 ntTSL 2 BASIC17.83■□□□□ 0.44
SOX3P41225 ZNF561-AS1-202ENST00000586614 568 ntTSL 5 BASIC17.83■□□□□ 0.44
SOX3P41225 MON1A-202ENST00000417270 2527 ntAPPRIS ALT2 TSL 5 BASIC17.83■□□□□ 0.44
SOX3P41225 FBXL3-201ENST00000355619 3503 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
SOX3P41225 RAB7A-201ENST00000265062 2244 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
SOX3P41225 RCC2P6-201ENST00000526625 1557 ntBASIC17.83■□□□□ 0.44
SOX3P41225 AKT1-211ENST00000554848 1595 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
SOX3P41225 AC020763.4-201ENST00000623414 4170 ntBASIC17.83■□□□□ 0.44
SOX3P41225 SMPD1-201ENST00000342245 2452 ntAPPRIS ALT1 TSL 1 (best) BASIC17.82■□□□□ 0.44
SOX3P41225 PDLIM2-205ENST00000397761 1491 ntAPPRIS P1 TSL 5 BASIC17.82■□□□□ 0.44
SOX3P41225 CASD1-201ENST00000297273 3942 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
SOX3P41225 PLCXD1-202ENST00000381663 1863 ntAPPRIS P2 TSL 5 BASIC17.82■□□□□ 0.44
SOX3P41225 LRRC23-207ENST00000433346 1387 ntTSL 5 BASIC17.82■□□□□ 0.44
SOX3P41225 GRM5-201ENST00000305432 4475 ntAPPRIS P3 TSL 1 (best) BASIC17.82■□□□□ 0.44
SOX3P41225 DNAJC11-201ENST00000294401 2210 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
SOX3P41225 SLC52A2-209ENST00000530047 1757 ntAPPRIS P1 TSL 2 BASIC17.82■□□□□ 0.44
SOX3P41225 NT5C1A-201ENST00000235628 1107 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
SOX3P41225 PSEN1-203ENST00000394157 1249 ntTSL 2 BASIC17.82■□□□□ 0.44
SOX3P41225 PTPA-216ENST00000432651 857 ntTSL 2 BASIC17.82■□□□□ 0.44
SOX3P41225 AC137630.1-201ENST00000452042 782 ntTSL 4 BASIC17.82■□□□□ 0.44
SOX3P41225 ASPHD1-203ENST00000483405 1115 ntAPPRIS ALT2 TSL 3 BASIC17.82■□□□□ 0.44
SOX3P41225 GCHFR-205ENST00000559932 695 ntTSL 2 BASIC17.82■□□□□ 0.44
SOX3P41225 AL160286.2-201ENST00000567150 934 ntBASIC17.82■□□□□ 0.44
SOX3P41225 PDCD5-207ENST00000590247 699 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
SOX3P41225 PHOSPHO2-206ENST00000616481 1252 ntAPPRIS P1 TSL 3 BASIC17.82■□□□□ 0.44
SOX3P41225 PHOSPHO2-208ENST00000617738 1053 ntAPPRIS P1 TSL 2 BASIC17.82■□□□□ 0.44
SOX3P41225 MACROD2-201ENST00000217246 4994 ntAPPRIS P1 TSL 2 BASIC17.82■□□□□ 0.44
SOX3P41225 AC012414.5-201ENST00000564214 1602 ntTSL 5 BASIC17.82■□□□□ 0.44
SOX3P41225 HOXC4-201ENST00000303406 1524 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
SOX3P41225 TMEM175-220ENST00000515740 1514 ntTSL 3 BASIC17.82■□□□□ 0.44
SOX3P41225 PAOX-201ENST00000278060 1858 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
SOX3P41225 TH-203ENST00000352909 1889 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
SOX3P41225 TH-205ENST00000381175 1898 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
SOX3P41225 STOML1-209ENST00000564777 1849 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
SOX3P41225 AAED1-201ENST00000375234 2863 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
SOX3P41225 TAL1-202ENST00000371884 4642 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
SOX3P41225 MAGED2-203ENST00000375053 2066 ntAPPRIS P2 TSL 1 (best) BASIC17.81■□□□□ 0.44
SOX3P41225 KCNK4-207ENST00000539216 1723 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
SOX3P41225 PRSS50-202ENST00000315170 1372 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
SOX3P41225 GPRIN2-201ENST00000374314 1696 ntAPPRIS P1 BASIC17.81■□□□□ 0.44
SOX3P41225 ACTR3B-203ENST00000397282 1692 ntTSL 2 BASIC17.81■□□□□ 0.44
SOX3P41225 MEF2B-201ENST00000409224 1683 ntTSL 2 BASIC17.81■□□□□ 0.44
SOX3P41225 CAMKV-205ENST00000467248 1688 ntTSL 2 BASIC17.81■□□□□ 0.44
SOX3P41225 CHPF-203ENST00000535926 2634 ntTSL 2 BASIC17.81■□□□□ 0.44
SOX3P41225 KLHL21-206ENST00000610898 1945 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
SOX3P41225 MMP23A-201ENST00000234610 1017 ntBASIC17.81■□□□□ 0.44
SOX3P41225 RABL2A-202ENST00000393165 1118 ntAPPRIS ALT2 TSL 1 (best) BASIC17.81■□□□□ 0.44
SOX3P41225 MIR1238-201ENST00000408483 83 ntBASIC17.81■□□□□ 0.44
SOX3P41225 AC211429.1-201ENST00000415277 523 ntBASIC17.81■□□□□ 0.44
SOX3P41225 AL390955.1-201ENST00000428694 934 ntBASIC17.81■□□□□ 0.44
SOX3P41225 ADCYAP1-202ENST00000450565 918 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
SOX3P41225 CHAC1-203ENST00000487220 853 ntTSL 3 BASIC17.81■□□□□ 0.44
SOX3P41225 YPEL3-207ENST00000566134 761 ntTSL 5 BASIC17.81■□□□□ 0.44
SOX3P41225 CDKN2A-213ENST00000579122 666 ntTSL 3 BASIC17.81■□□□□ 0.44
SOX3P41225 AC006504.5-207ENST00000586220 487 ntTSL 2 BASIC17.81■□□□□ 0.44
SOX3P41225 ANKRD54-211ENST00000609454 825 ntTSL 3 BASIC17.81■□□□□ 0.44
SOX3P41225 ATG4B-226ENST00000625810 370 ntTSL 4 BASIC17.81■□□□□ 0.44
SOX3P41225 ADCY5-202ENST00000462833 7311 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
SOX3P41225 AC008060.1-201ENST00000401499 1551 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
SOX3P41225 WDR41-208ENST00000507029 1553 ntTSL 2 BASIC17.81■□□□□ 0.44
SOX3P41225 INTS11-250ENST00000620829 1862 ntTSL 2 BASIC17.81■□□□□ 0.44
SOX3P41225 RBFOX1-215ENST00000553186 2196 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
SOX3P41225 AL032819.2-201ENST00000624543 2162 ntBASIC17.81■□□□□ 0.44
SOX3P41225 CARD9-201ENST00000371732 2123 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
SOX3P41225 KRT15-203ENST00000393976 2394 ntAPPRIS P1 TSL 5 BASIC17.81■□□□□ 0.44
SOX3P41225 FAM228A-201ENST00000295150 1774 ntAPPRIS P2 TSL 1 (best) BASIC17.81■□□□□ 0.44
SOX3P41225 RIIAD1-201ENST00000326413 1772 ntTSL 2 BASIC17.81■□□□□ 0.44
SOX3P41225 MBD3-201ENST00000156825 5518 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
SOX3P41225 CXorf49-202ENST00000535490 1715 ntAPPRIS P1 TSL 5 BASIC17.81■□□□□ 0.44
SOX3P41225 CXorf49B-202ENST00000542739 1715 ntAPPRIS P1 TSL 5 BASIC17.81■□□□□ 0.44
SOX3P41225 TRAK2-202ENST00000430254 1436 ntTSL 2 BASIC17.81■□□□□ 0.44
SOX3P41225 FBXL16-203ENST00000562563 2257 ntTSL 2 BASIC17.81■□□□□ 0.44
SOX3P41225 ADK-206ENST00000541550 2222 ntTSL 2 BASIC17.8■□□□□ 0.44
SOX3P41225 PABPC1L-204ENST00000255136 2129 ntAPPRIS P1 TSL 5 BASIC17.8■□□□□ 0.44
SOX3P41225 TP73-202ENST00000354437 2140 ntTSL 5 BASIC17.8■□□□□ 0.44
SOX3P41225 PITX2-203ENST00000355080 2100 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 22.1 ms