Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 PAIP1-203ENST00000436644 1734 ntAPPRIS ALT1 TSL 1 (best) BASIC18.22■□□□□ 0.51
COL5A1P20908 CCDC74B-202ENST00000392984 1353 ntAPPRIS ALT2 TSL 5 BASIC18.22■□□□□ 0.51
COL5A1P20908 ASL-205ENST00000395332 1622 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
COL5A1P20908 ARID3C-201ENST00000378909 1411 ntAPPRIS P1 TSL 2 BASIC18.22■□□□□ 0.51
COL5A1P20908 LY6K-201ENST00000292430 2671 ntAPPRIS P3 TSL 1 (best) BASIC18.21■□□□□ 0.51
COL5A1P20908 DMPK-205ENST00000458663 2548 ntTSL 5 BASIC18.21■□□□□ 0.51
COL5A1P20908 Metazoa_SRP.28-201ENST00000366402 260 ntBASIC18.21■□□□□ 0.51
COL5A1P20908 CYCS-202ENST00000409409 974 ntAPPRIS P1 TSL 3 BASIC18.21■□□□□ 0.51
COL5A1P20908 TSPY22P-201ENST00000427496 604 ntBASIC18.21■□□□□ 0.51
COL5A1P20908 CARHSP1-205ENST00000562843 843 ntTSL 2 BASIC18.21■□□□□ 0.51
COL5A1P20908 SPINT1-AS1-202ENST00000564302 643 ntTSL 2 BASIC18.21■□□□□ 0.51
COL5A1P20908 AC009084.1-201ENST00000566869 317 ntTSL 5 BASIC18.21■□□□□ 0.51
COL5A1P20908 SLC25A6P4-201ENST00000586535 553 ntBASIC18.21■□□□□ 0.51
COL5A1P20908 TEN1-204ENST00000588202 862 ntTSL 3 BASIC18.21■□□□□ 0.51
COL5A1P20908 ADORA1-208ENST00000618295 862 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
COL5A1P20908 FAM87B-201ENST00000326734 1947 ntTSL 2 BASIC18.21■□□□□ 0.51
COL5A1P20908 PAQR4-201ENST00000293978 2644 ntTSL 2 BASIC18.21■□□□□ 0.51
COL5A1P20908 DMPK-203ENST00000354227 1982 ntTSL 2 BASIC18.21■□□□□ 0.51
COL5A1P20908 SAXO1-202ENST00000380534 2099 ntAPPRIS P3 TSL 1 (best) BASIC18.21■□□□□ 0.51
COL5A1P20908 CDK10-208ENST00000505473 1424 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
COL5A1P20908 OGG1-201ENST00000302003 1655 ntAPPRIS P4 TSL 1 (best) BASIC18.21■□□□□ 0.51
COL5A1P20908 RPUSD1-202ENST00000561734 2159 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
COL5A1P20908 ADGRB2-204ENST00000398542 5176 ntTSL 5 BASIC18.21■□□□□ 0.51
COL5A1P20908 CIZ1-204ENST00000372938 2984 ntAPPRIS P3 TSL 1 (best) BASIC18.21■□□□□ 0.51
COL5A1P20908 CNPY2-201ENST00000273308 1214 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
COL5A1P20908 TMEM150B-201ENST00000326652 943 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
COL5A1P20908 SDR39U1-201ENST00000399395 1233 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
COL5A1P20908 AL645608.6-201ENST00000418300 402 ntTSL 3 BASIC18.21■□□□□ 0.51
COL5A1P20908 AL845331.1-201ENST00000424978 1190 ntBASIC18.21■□□□□ 0.51
COL5A1P20908 AP000347.1-202ENST00000435868 847 ntBASIC18.21■□□□□ 0.51
COL5A1P20908 AL445472.1-201ENST00000452532 1007 ntTSL 2 BASIC18.21■□□□□ 0.51
COL5A1P20908 ZNF436-AS1-206ENST00000518821 461 ntTSL 2 BASIC18.21■□□□□ 0.51
COL5A1P20908 AC021066.1-201ENST00000549788 647 ntTSL 3 BASIC18.21■□□□□ 0.51
COL5A1P20908 NUTF2-205ENST00000568396 1179 ntAPPRIS P1 TSL 3 BASIC18.21■□□□□ 0.51
COL5A1P20908 NAA38-203ENST00000575071 553 ntTSL 2 BASIC18.21■□□□□ 0.51
COL5A1P20908 ISG15-203ENST00000624697 788 ntAPPRIS ALT2 TSL 3 BASIC18.21■□□□□ 0.51
COL5A1P20908 AL513523.2-201ENST00000633218 660 ntTSL 3 BASIC18.21■□□□□ 0.51
COL5A1P20908 CEBPA-201ENST00000498907 2631 ntAPPRIS P1 BASIC18.21■□□□□ 0.5
COL5A1P20908 APBB1-207ENST00000529519 1442 ntTSL 5 BASIC18.2■□□□□ 0.5
COL5A1P20908 B4GALT2-201ENST00000309519 2004 ntTSL 2 BASIC18.2■□□□□ 0.5
COL5A1P20908 THTPA-202ENST00000404535 1779 ntAPPRIS P1 TSL 2 BASIC18.2■□□□□ 0.5
COL5A1P20908 CHST8-203ENST00000438847 2133 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
COL5A1P20908 ZNF821-221ENST00000611294 1833 ntTSL 3 BASIC18.2■□□□□ 0.5
COL5A1P20908 GNG5-202ENST00000370645 790 ntAPPRIS P1 TSL 2 BASIC18.2■□□□□ 0.5
COL5A1P20908 NFIB-201ENST00000380921 1274 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
COL5A1P20908 TSPY8-203ENST00000383005 435 ntTSL 5 BASIC18.2■□□□□ 0.5
COL5A1P20908 TMEM220-AS1-201ENST00000579114 575 ntTSL 4 BASIC18.2■□□□□ 0.5
COL5A1P20908 TMIGD2-202ENST00000595645 1212 ntAPPRIS ALT2 TSL 1 (best) BASIC18.2■□□□□ 0.5
COL5A1P20908 AC104692.2-201ENST00000603054 253 ntBASIC18.2■□□□□ 0.5
COL5A1P20908 MAP7D2-203ENST00000443379 2476 ntAPPRIS ALT2 TSL 2 BASIC18.2■□□□□ 0.5
COL5A1P20908 ANKRD13D-216ENST00000514166 2138 ntTSL 2 BASIC18.2■□□□□ 0.5
COL5A1P20908 KRT8P3-201ENST00000519669 1449 ntBASIC18.2■□□□□ 0.5
COL5A1P20908 HOXB1-202ENST00000577092 1414 ntBASIC18.2■□□□□ 0.5
COL5A1P20908 TRIM3-202ENST00000359518 3042 ntAPPRIS P1 TSL 5 BASIC18.19■□□□□ 0.5
COL5A1P20908 NEU4-205ENST00000407683 2273 ntAPPRIS P1 TSL 2 BASIC18.19■□□□□ 0.5
COL5A1P20908 TBL1Y-201ENST00000346432 2312 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
COL5A1P20908 POLD2-201ENST00000223361 1597 ntTSL 5 BASIC18.19■□□□□ 0.5
COL5A1P20908 KCNN2-207ENST00000610748 2091 ntTSL 3 BASIC18.19■□□□□ 0.5
COL5A1P20908 BAALC-202ENST00000306391 243 ntTSL 5 BASIC18.19■□□□□ 0.5
COL5A1P20908 MOS-201ENST00000311923 1041 ntAPPRIS P1 BASIC18.19■□□□□ 0.5
COL5A1P20908 BAALC-204ENST00000330955 222 ntTSL 5 BASIC18.19■□□□□ 0.5
COL5A1P20908 LINC01770-202ENST00000430109 510 ntTSL 3 BASIC18.19■□□□□ 0.5
COL5A1P20908 LINC01237-203ENST00000430555 843 ntTSL 4 BASIC18.19■□□□□ 0.5
COL5A1P20908 RABL2B-209ENST00000435118 1126 ntAPPRIS P3 TSL 1 (best) BASIC18.19■□□□□ 0.5
COL5A1P20908 RNF126P1-202ENST00000569893 925 ntBASIC18.19■□□□□ 0.5
COL5A1P20908 TBCB-205ENST00000585746 875 ntTSL 3 BASIC18.19■□□□□ 0.5
COL5A1P20908 PNMA8A-203ENST00000602246 572 ntAPPRIS ALT2 TSL 4 BASIC18.19■□□□□ 0.5
COL5A1P20908 AC004263.2-201ENST00000617183 678 ntBASIC18.19■□□□□ 0.5
COL5A1P20908 ANKRD36-207ENST00000639293 1168 ntAPPRIS ALT2 TSL 5 BASIC18.19■□□□□ 0.5
COL5A1P20908 AC125437.2-201ENST00000625180 2167 ntBASIC18.19■□□□□ 0.5
COL5A1P20908 TAX1BP3-202ENST00000611779 1302 ntTSL 2 BASIC18.19■□□□□ 0.5
COL5A1P20908 WNT7B-204ENST00000410089 2202 ntTSL 5 BASIC18.19■□□□□ 0.5
COL5A1P20908 SPG7-202ENST00000341316 2288 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
COL5A1P20908 MAP3K7CL-206ENST00000399928 1904 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
COL5A1P20908 PCSK6-215ENST00000611967 3336 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
COL5A1P20908 TMSB4X-203ENST00000380636 1702 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
COL5A1P20908 NPNT-214ENST00000514622 2362 ntTSL 2 BASIC18.19■□□□□ 0.5
COL5A1P20908 AC016065.1-201ENST00000500118 2413 ntTSL 2 BASIC18.19■□□□□ 0.5
COL5A1P20908 GML-201ENST00000220940 723 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
COL5A1P20908 INSL3-201ENST00000317306 755 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
COL5A1P20908 PARK7-201ENST00000338639 949 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
COL5A1P20908 LINC02247-201ENST00000417135 743 ntTSL 3 BASIC18.19■□□□□ 0.5
COL5A1P20908 AC069368.1-202ENST00000437723 750 ntAPPRIS P1 TSL 5 BASIC18.19■□□□□ 0.5
COL5A1P20908 KLK12-205ENST00000529888 735 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
COL5A1P20908 LIMD2-211ENST00000583211 1298 ntTSL 3 BASIC18.19■□□□□ 0.5
COL5A1P20908 SCAMP4-213ENST00000621748 1172 ntAPPRIS P1 TSL 5 BASIC18.19■□□□□ 0.5
COL5A1P20908 MAP2K3-215ENST00000627447 351 ntTSL 5 BASIC18.19■□□□□ 0.5
COL5A1P20908 RAB5C-202ENST00000393860 1912 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
COL5A1P20908 RPS6KB1-204ENST00000443572 1913 ntTSL 2 BASIC18.19■□□□□ 0.5
COL5A1P20908 KRT13-202ENST00000336861 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
COL5A1P20908 RAB5A-201ENST00000273047 2536 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
COL5A1P20908 ICAM5-201ENST00000221980 3000 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
COL5A1P20908 KCNC2-204ENST00000540018 2168 ntAPPRIS ALT2 TSL 2 BASIC18.18■□□□□ 0.5
COL5A1P20908 LHX3-202ENST00000371748 2365 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
COL5A1P20908 NEK3-208ENST00000618534 2414 ntAPPRIS P2 TSL 5 BASIC18.18■□□□□ 0.5
COL5A1P20908 TTC12-202ENST00000393020 2541 ntTSL 5 BASIC18.18■□□□□ 0.5
COL5A1P20908 PTPMT1-201ENST00000326656 928 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
COL5A1P20908 ATP6V0C-201ENST00000330398 1175 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
COL5A1P20908 TOB2P1-201ENST00000469761 992 ntBASIC18.18■□□□□ 0.5
COL5A1P20908 AC008825.1-201ENST00000504398 452 ntTSL 3 BASIC18.18■□□□□ 0.5
Retrieved 100 of 98,524 protein–RNA pairs in 28.3 ms