Protein–RNA interactions for Protein: P06400

RB1, Retinoblastoma-associated protein, humanhuman

Predictions only

Length 928 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RB1P06400 MAFG-202ENST00000392366 1743 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
RB1P06400 ZNF655-203ENST00000357864 1370 ntTSL 2 BASIC20.07■□□□□ 0.8
RB1P06400 CDX4-201ENST00000373514 1515 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
RB1P06400 CYP2D7-201ENST00000358097 1655 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
RB1P06400 FAM182B-201ENST00000376403 1681 ntAPPRIS P5 TSL 1 (best) BASIC20.07■□□□□ 0.8
RB1P06400 ZFC3H1-211ENST00000552037 1484 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
RB1P06400 SAXO1-202ENST00000380534 2099 ntAPPRIS P3 TSL 1 (best) BASIC20.06■□□□□ 0.8
RB1P06400 ZNF668-207ENST00000535577 2396 ntAPPRIS P1 TSL 5 BASIC20.06■□□□□ 0.8
RB1P06400 EPS8L1-203ENST00000540810 2360 ntTSL 2 BASIC20.06■□□□□ 0.8
RB1P06400 ISG15-201ENST00000379389 711 ntAPPRIS P2 TSL 1 (best) BASIC20.06■□□□□ 0.8
RB1P06400 AC093459.1-201ENST00000444567 481 ntTSL 3 BASIC20.06■□□□□ 0.8
RB1P06400 AL133343.2-201ENST00000457213 370 ntTSL 3 BASIC20.06■□□□□ 0.8
RB1P06400 CMPK1-205ENST00000471289 816 ntTSL 2 BASIC20.06■□□□□ 0.8
RB1P06400 AC104819.1-201ENST00000504587 486 ntBASIC20.06■□□□□ 0.8
RB1P06400 NOP16-205ENST00000509257 1000 ntTSL 2 BASIC20.06■□□□□ 0.8
RB1P06400 VEGFA-222ENST00000520948 1199 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
RB1P06400 STAU2-229ENST00000524300 3065 ntAPPRIS P4 TSL 2 BASIC20.06■□□□□ 0.8
RB1P06400 BRICD5-203ENST00000566018 555 ntTSL 2 BASIC20.06■□□□□ 0.8
RB1P06400 AL512408.1-201ENST00000569378 2000 ntBASIC20.06■□□□□ 0.8
RB1P06400 IZUMO4-213ENST00000620263 947 ntTSL 3 BASIC20.06■□□□□ 0.8
RB1P06400 LITAF-220ENST00000620789 692 ntTSL 5 BASIC20.06■□□□□ 0.8
RB1P06400 MAP2K3-215ENST00000627447 351 ntTSL 5 BASIC20.06■□□□□ 0.8
RB1P06400 ASAH1-251ENST00000637561 929 ntTSL 2 BASIC20.06■□□□□ 0.8
RB1P06400 STXBP6-203ENST00000419632 1970 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
RB1P06400 STEAP1B-201ENST00000404369 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC20.06■□□□□ 0.8
RB1P06400 FBXO17-201ENST00000292852 2386 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
RB1P06400 FAM87B-201ENST00000326734 1947 ntTSL 2 BASIC20.06■□□□□ 0.8
RB1P06400 AL162377.1-201ENST00000618844 1793 ntBASIC20.06■□□□□ 0.8
RB1P06400 TRIM36-202ENST00000379617 1322 ntTSL 2 BASIC20.05■□□□□ 0.8
RB1P06400 BAALC-205ENST00000438105 2662 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
RB1P06400 SLC22A17-211ENST00000637426 1563 ntAPPRIS ALT2 TSL 1 (best) BASIC20.05■□□□□ 0.8
RB1P06400 AC005906.2-207ENST00000639005 1580 ntTSL 5 BASIC20.05■□□□□ 0.8
RB1P06400 SPSB3-201ENST00000301717 1449 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
RB1P06400 IRF3-202ENST00000377135 1442 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
RB1P06400 POU4F3-201ENST00000230732 1182 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
RB1P06400 TPM1-203ENST00000317516 738 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
RB1P06400 KCNAB2-205ENST00000378092 1202 ntAPPRIS ALT1 TSL 5 BASIC20.05■□□□□ 0.8
RB1P06400 KRTAP5-6-201ENST00000382160 561 ntAPPRIS P1 BASIC20.05■□□□□ 0.8
RB1P06400 CYCS-202ENST00000409409 974 ntAPPRIS P1 TSL 3 BASIC20.05■□□□□ 0.8
RB1P06400 LINC01237-203ENST00000430555 843 ntTSL 4 BASIC20.05■□□□□ 0.8
RB1P06400 AL137026.1-202ENST00000452578 1089 ntTSL 2 BASIC20.05■□□□□ 0.8
RB1P06400 AL611929.1-201ENST00000457340 449 ntTSL 3 BASIC20.05■□□□□ 0.8
RB1P06400 NTMT1-205ENST00000459968 1123 ntTSL 2 BASIC20.05■□□□□ 0.8
RB1P06400 NTMT1-207ENST00000482347 1072 ntTSL 2 BASIC20.05■□□□□ 0.8
RB1P06400 AP002469.2-201ENST00000531724 424 ntBASIC20.05■□□□□ 0.8
RB1P06400 TPM1-218ENST00000559281 851 ntTSL 5 BASIC20.05■□□□□ 0.8
RB1P06400 BMF-207ENST00000559701 630 ntTSL 3 BASIC20.05■□□□□ 0.8
RB1P06400 ISG15-203ENST00000624697 788 ntAPPRIS ALT2 TSL 3 BASIC20.05■□□□□ 0.8
RB1P06400 CEACAM3-208ENST00000630848 1110 ntAPPRIS ALT2 TSL 5 BASIC20.05■□□□□ 0.8
RB1P06400 CHTOP-204ENST00000368694 2096 ntAPPRIS P3 TSL 1 (best) BASIC20.05■□□□□ 0.8
RB1P06400 FAM120A-201ENST00000277165 5118 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
RB1P06400 LSM14A-202ENST00000540746 2152 ntTSL 2 BASIC20.05■□□□□ 0.8
RB1P06400 ASPG-201ENST00000546892 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC20.05■□□□□ 0.8
RB1P06400 DNAJB11-202ENST00000439351 2398 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
RB1P06400 KCNK12-201ENST00000327876 6227 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
RB1P06400 ZNF852-201ENST00000436261 1968 ntAPPRIS P1 TSL 2 BASIC20.04■□□□□ 0.8
RB1P06400 GOLGA6L5P-202ENST00000515341 1828 ntBASIC20.04■□□□□ 0.8
RB1P06400 SLC16A3-201ENST00000392339 2074 ntAPPRIS P1 TSL 5 BASIC20.04■□□□□ 0.8
RB1P06400 SLC16A3-202ENST00000392341 2086 ntAPPRIS P1 TSL 5 BASIC20.04■□□□□ 0.8
RB1P06400 OLIG2-202ENST00000382357 2578 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
RB1P06400 MGAT3-201ENST00000341184 5062 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
RB1P06400 TMEM42-201ENST00000302392 1026 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
RB1P06400 PHPT1-202ENST00000371661 985 ntTSL 5 BASIC20.04■□□□□ 0.8
RB1P06400 C7orf34-201ENST00000409607 766 ntAPPRIS P2 TSL 1 (best) BASIC20.04■□□□□ 0.8
RB1P06400 SEC61G-203ENST00000415949 732 ntAPPRIS P1 TSL 5 BASIC20.04■□□□□ 0.8
RB1P06400 AC073111.4-202ENST00000486297 585 ntTSL 4 BASIC20.04■□□□□ 0.8
RB1P06400 PLPP5-214ENST00000531823 875 ntTSL 3 BASIC20.04■□□□□ 0.8
RB1P06400 PPP1R1B-208ENST00000580825 1038 ntAPPRIS P1 TSL 5 BASIC20.04■□□□□ 0.8
RB1P06400 AC020909.1-201ENST00000599632 1265 ntAPPRIS P1 TSL 5 BASIC20.04■□□□□ 0.8
RB1P06400 LINC00454-206ENST00000609861 841 ntTSL 5 BASIC20.04■□□□□ 0.8
RB1P06400 CYP1B1-AS1-214ENST00000620177 554 ntTSL 4 BASIC20.04■□□□□ 0.8
RB1P06400 TMEM91-210ENST00000542945 1610 ntTSL 2 BASIC20.04■□□□□ 0.8
RB1P06400 ST8SIA2-201ENST00000268164 5708 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
RB1P06400 HTRA3-202ENST00000382512 2023 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
RB1P06400 DBNL-219ENST00000490734 2004 ntTSL 2 BASIC20.03■□□□□ 0.8
RB1P06400 MSL1-204ENST00000578648 2267 ntTSL 5 BASIC20.03■□□□□ 0.8
RB1P06400 ZNF414-201ENST00000255616 1178 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
RB1P06400 CCDC134-201ENST00000255784 1270 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
RB1P06400 CD1E-203ENST00000368156 861 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
RB1P06400 CRELD2-202ENST00000403427 1242 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
RB1P06400 AP001625.2-201ENST00000442605 575 ntTSL 2 BASIC20.03■□□□□ 0.8
RB1P06400 FNDC5-205ENST00000496770 837 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
RB1P06400 MFGE8-203ENST00000542878 1172 ntTSL 2 BASIC20.03■□□□□ 0.8
RB1P06400 C14orf144-201ENST00000553757 537 ntTSL 4 BASIC20.03■□□□□ 0.8
RB1P06400 SLC25A6P4-201ENST00000586535 553 ntBASIC20.03■□□□□ 0.8
RB1P06400 TSG101-201ENST00000251968 1824 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
RB1P06400 WDSUB1-202ENST00000359774 1912 ntAPPRIS P1 TSL 5 BASIC20.03■□□□□ 0.8
RB1P06400 PHACTR2-203ENST00000367584 2490 ntAPPRIS ALT2 TSL 5 BASIC20.03■□□□□ 0.8
RB1P06400 SDHAP1-207ENST00000440850 2000 ntBASIC20.03■□□□□ 0.8
RB1P06400 STK11-205ENST00000586243 2777 ntAPPRIS ALT2 TSL 5 BASIC20.03■□□□□ 0.8
RB1P06400 AP5S1-202ENST00000379567 1791 ntAPPRIS P1 TSL 2 BASIC20.03■□□□□ 0.8
RB1P06400 EFS-203ENST00000429593 2610 ntTSL 2 BASIC20.03■□□□□ 0.8
RB1P06400 HOMEZ-201ENST00000357460 4971 ntAPPRIS P2 TSL 1 (best) BASIC20.03■□□□□ 0.8
RB1P06400 LINC00960-201ENST00000463183 1333 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
RB1P06400 UBE2E1-201ENST00000306627 1511 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
RB1P06400 Z83836.1-201ENST00000624605 1642 ntBASIC20.02■□□□□ 0.8
RB1P06400 MALT1-201ENST00000345724 2866 ntAPPRIS ALT2 TSL 1 (best) BASIC20.02■□□□□ 0.8
RB1P06400 UBXN6-201ENST00000301281 1943 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
RB1P06400 AC073314.1-201ENST00000568729 2216 ntBASIC20.02■□□□□ 0.8
RB1P06400 PCAT7-201ENST00000452148 1164 ntTSL 2 BASIC20.02■□□□□ 0.8
Retrieved 100 of 98,524 protein–RNA pairs in 48 ms