Protein–RNA interactions for Protein: A6NMZ7

COL6A6, Collagen alpha-6(VI) chain, humanhuman

Predictions only

Length 2,263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A6A6NMZ7 SLC35E4-202ENST00000406566 2081 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
COL6A6A6NMZ7 KAT5-201ENST00000341318 2296 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
COL6A6A6NMZ7 ME2-202ENST00000382927 2492 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
COL6A6A6NMZ7 LMNB1-202ENST00000395354 1572 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
COL6A6A6NMZ7 LINC01558-202ENST00000495520 1652 ntTSL 2 BASIC17.09■□□□□ 0.33
COL6A6A6NMZ7 AC011511.1-201ENST00000452032 1956 ntAPPRIS P1 TSL 2 BASIC17.08■□□□□ 0.33
COL6A6A6NMZ7 LAT-204ENST00000395461 1448 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.33
COL6A6A6NMZ7 GAS1-201ENST00000298743 2827 ntAPPRIS P1 BASIC17.08■□□□□ 0.33
COL6A6A6NMZ7 CXorf49-202ENST00000535490 1715 ntAPPRIS P1 TSL 5 BASIC17.08■□□□□ 0.33
COL6A6A6NMZ7 CXorf49B-202ENST00000542739 1715 ntAPPRIS P1 TSL 5 BASIC17.08■□□□□ 0.33
COL6A6A6NMZ7 LMLN-210ENST00000482695 2010 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.33
COL6A6A6NMZ7 ZNF414-201ENST00000255616 1178 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
COL6A6A6NMZ7 YWHAZ-205ENST00000395956 2974 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
COL6A6A6NMZ7 MIR940-201ENST00000401276 94 ntBASIC17.08■□□□□ 0.33
COL6A6A6NMZ7 RPS8P6-201ENST00000426177 609 ntBASIC17.08■□□□□ 0.33
COL6A6A6NMZ7 HFE-210ENST00000470149 1123 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.33
COL6A6A6NMZ7 AL049869.3-201ENST00000554918 558 ntTSL 3 BASIC17.08■□□□□ 0.33
COL6A6A6NMZ7 NUBP2-214ENST00000568706 913 ntTSL 2 BASIC17.08■□□□□ 0.33
COL6A6A6NMZ7 LIMD2-211ENST00000583211 1298 ntTSL 3 BASIC17.08■□□□□ 0.33
COL6A6A6NMZ7 TYROBP-209ENST00000589517 415 ntAPPRIS ALT1 TSL 1 (best) BASIC17.08■□□□□ 0.33
COL6A6A6NMZ7 ZNF655-203ENST00000357864 1370 ntTSL 2 BASIC17.08■□□□□ 0.33
COL6A6A6NMZ7 AGPAT2-201ENST00000371694 1391 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
COL6A6A6NMZ7 NOTUM-201ENST00000409678 2329 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
COL6A6A6NMZ7 FUZ-201ENST00000313777 1675 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
COL6A6A6NMZ7 C7orf50-203ENST00000397100 1264 ntAPPRIS P2 TSL 3 BASIC17.08■□□□□ 0.32
COL6A6A6NMZ7 DARS-AS1-202ENST00000419808 772 ntTSL 5 BASIC17.08■□□□□ 0.32
COL6A6A6NMZ7 PCAT7-201ENST00000452148 1164 ntTSL 2 BASIC17.08■□□□□ 0.32
COL6A6A6NMZ7 AC073111.4-202ENST00000486297 585 ntTSL 4 BASIC17.08■□□□□ 0.32
COL6A6A6NMZ7 AC093909.1-201ENST00000504731 1122 ntBASIC17.08■□□□□ 0.32
COL6A6A6NMZ7 PRSS8-206ENST00000568261 1214 ntTSL 2 BASIC17.08■□□□□ 0.32
COL6A6A6NMZ7 LYRM1-209ENST00000568663 857 ntAPPRIS P1 TSL 4 BASIC17.08■□□□□ 0.32
COL6A6A6NMZ7 TWSG1-202ENST00000581641 1119 ntTSL 2 BASIC17.08■□□□□ 0.32
COL6A6A6NMZ7 CAND2-206ENST00000626378 333 ntTSL 5 BASIC17.08■□□□□ 0.32
COL6A6A6NMZ7 TSPY4-205ENST00000640033 663 ntAPPRIS ALT2 TSL 5 BASIC17.08■□□□□ 0.32
COL6A6A6NMZ7 CDX4-201ENST00000373514 1515 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
COL6A6A6NMZ7 DOCK9-206ENST00000427887 4176 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
COL6A6A6NMZ7 BIN1-205ENST00000351659 2365 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
COL6A6A6NMZ7 AC007225.1-201ENST00000566331 1836 ntBASIC17.07■□□□□ 0.32
COL6A6A6NMZ7 HSPB1-201ENST00000248553 909 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
COL6A6A6NMZ7 ISCA2-201ENST00000298818 851 ntTSL 5 BASIC17.07■□□□□ 0.32
COL6A6A6NMZ7 STX8-201ENST00000306357 1246 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
COL6A6A6NMZ7 BUB3-202ENST00000368859 667 ntTSL 3 BASIC17.07■□□□□ 0.32
COL6A6A6NMZ7 AFG3L1P-210ENST00000431757 569 ntTSL 4 BASIC17.07■□□□□ 0.32
COL6A6A6NMZ7 MCCC2-205ENST00000509358 1214 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
COL6A6A6NMZ7 GSTZ1-218ENST00000557053 580 ntTSL 3 BASIC17.07■□□□□ 0.32
COL6A6A6NMZ7 CCNC-219ENST00000627680 896 ntTSL 5 BASIC17.07■□□□□ 0.32
COL6A6A6NMZ7 LRCH4-211ENST00000619071 2098 ntTSL 5 BASIC17.07■□□□□ 0.32
COL6A6A6NMZ7 OAF-201ENST00000328965 2525 ntAPPRIS P2 TSL 1 (best) BASIC17.07■□□□□ 0.32
COL6A6A6NMZ7 DMRT2-203ENST00000358146 1965 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
COL6A6A6NMZ7 KIRREL2-202ENST00000347900 2015 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
COL6A6A6NMZ7 CIZ1-206ENST00000372954 2731 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
COL6A6A6NMZ7 CCDC38-201ENST00000344280 2277 ntAPPRIS P2 TSL 1 (best) BASIC17.07■□□□□ 0.32
COL6A6A6NMZ7 FBXL18-203ENST00000453700 1932 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
COL6A6A6NMZ7 CD164L2-202ENST00000374027 1457 ntAPPRIS P3 TSL 1 (best) BASIC17.07■□□□□ 0.32
COL6A6A6NMZ7 AC062028.1-203ENST00000447433 1472 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
COL6A6A6NMZ7 MOB1B-202ENST00000396051 1107 ntTSL 2 BASIC17.07■□□□□ 0.32
COL6A6A6NMZ7 LINC00623-201ENST00000613486 486 ntTSL 5 BASIC17.07■□□□□ 0.32
COL6A6A6NMZ7 SLC35G2-202ENST00000446465 2060 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
COL6A6A6NMZ7 ACBD4-203ENST00000398322 1986 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
COL6A6A6NMZ7 ILDR1-203ENST00000393631 1456 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
COL6A6A6NMZ7 CAPN12-212ENST00000601953 2381 ntTSL 5 BASIC17.06■□□□□ 0.32
COL6A6A6NMZ7 LPCAT4-201ENST00000314891 2262 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
COL6A6A6NMZ7 DEPTOR-203ENST00000523492 1397 ntTSL 2 BASIC17.06■□□□□ 0.32
COL6A6A6NMZ7 AC010616.1-201ENST00000597630 2078 ntAPPRIS P1 TSL 5 BASIC17.06■□□□□ 0.32
COL6A6A6NMZ7 DPY30-201ENST00000295066 631 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
COL6A6A6NMZ7 GSTO2-201ENST00000338595 1179 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
COL6A6A6NMZ7 DPY30-202ENST00000342166 708 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
COL6A6A6NMZ7 ARMC12-202ENST00000373866 1254 ntAPPRIS P1 TSL 3 BASIC17.06■□□□□ 0.32
COL6A6A6NMZ7 SPCS2-202ENST00000526361 772 ntTSL 2 BASIC17.06■□□□□ 0.32
COL6A6A6NMZ7 ABHD17C-201ENST00000258884 2368 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
COL6A6A6NMZ7 SLC35A3-210ENST00000638371 2298 ntTSL 5 BASIC17.06■□□□□ 0.32
COL6A6A6NMZ7 LINC02138-201ENST00000378340 1326 ntTSL 2 BASIC17.06■□□□□ 0.32
COL6A6A6NMZ7 WIPF1-202ENST00000359761 2003 ntAPPRIS P2 TSL 1 (best) BASIC17.06■□□□□ 0.32
COL6A6A6NMZ7 CRYBB2P1-202ENST00000382734 1364 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
COL6A6A6NMZ7 ZNF259P1-201ENST00000407656 1365 ntBASIC17.06■□□□□ 0.32
COL6A6A6NMZ7 BDKRB1-202ENST00000553356 1526 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
COL6A6A6NMZ7 UNC119-201ENST00000301032 1653 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
COL6A6A6NMZ7 TRIM3-201ENST00000345851 2879 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
COL6A6A6NMZ7 RCN3-201ENST00000270645 1859 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
COL6A6A6NMZ7 DMAP1-201ENST00000315913 1552 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
COL6A6A6NMZ7 ARMC10-202ENST00000323716 2635 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
COL6A6A6NMZ7 HSD17B8-203ENST00000374662 990 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
COL6A6A6NMZ7 TEX30-206ENST00000376032 1165 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
COL6A6A6NMZ7 LBH-204ENST00000406087 559 ntTSL 4 BASIC17.05■□□□□ 0.32
COL6A6A6NMZ7 DNAJB3-202ENST00000449667 1266 ntBASIC17.05■□□□□ 0.32
COL6A6A6NMZ7 KIRREL3-AS1-201ENST00000548204 586 ntTSL 3 BASIC17.05■□□□□ 0.32
COL6A6A6NMZ7 TEN1-204ENST00000588202 862 ntTSL 3 BASIC17.05■□□□□ 0.32
COL6A6A6NMZ7 RABAC1-208ENST00000601078 728 ntTSL 3 BASIC17.05■□□□□ 0.32
COL6A6A6NMZ7 AL390719.2-201ENST00000606993 987 ntBASIC17.05■□□□□ 0.32
COL6A6A6NMZ7 AL592071.1-201ENST00000611956 408 ntBASIC17.05■□□□□ 0.32
COL6A6A6NMZ7 CCSAP-201ENST00000284617 5121 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
COL6A6A6NMZ7 CERS4-201ENST00000251363 1797 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
COL6A6A6NMZ7 DENND1A-201ENST00000373618 3003 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
COL6A6A6NMZ7 CD151-203ENST00000397421 1486 ntAPPRIS P2 TSL 1 (best) BASIC17.05■□□□□ 0.32
COL6A6A6NMZ7 VPS37D-202ENST00000451519 1303 ntTSL 5 BASIC17.05■□□□□ 0.32
COL6A6A6NMZ7 B4GALNT1-208ENST00000550764 1967 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
COL6A6A6NMZ7 LRRC61-201ENST00000323078 1684 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
COL6A6A6NMZ7 SLC25A42-201ENST00000318596 3120 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
COL6A6A6NMZ7 PLAUR-203ENST00000340093 1548 ntAPPRIS P3 TSL 1 (best) BASIC17.05■□□□□ 0.32
COL6A6A6NMZ7 RBFADN-201ENST00000562391 1350 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 21.7 ms