Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 AL591501.1-201ENST00000439992 495 ntTSL 5 BASIC3.44□□□□□ -1.86
TRIM39Q9HCM9 RPS29P31-201ENST00000446147 164 ntBASIC3.44□□□□□ -1.86
TRIM39Q9HCM9 FCF1P4-201ENST00000448326 183 ntBASIC3.44□□□□□ -1.86
TRIM39Q9HCM9 CYCSP35-201ENST00000451978 304 ntBASIC3.44□□□□□ -1.86
TRIM39Q9HCM9 AC025518.1-201ENST00000479856 347 ntBASIC3.44□□□□□ -1.86
TRIM39Q9HCM9 PPP2R2B-IT1-201ENST00000505921 447 ntTSL 3 BASIC3.44□□□□□ -1.86
TRIM39Q9HCM9 AL159163.1-201ENST00000507747 600 ntAPPRIS P1 TSL 5 BASIC3.44□□□□□ -1.86
TRIM39Q9HCM9 MRPS36P2-201ENST00000512569 299 ntBASIC3.44□□□□□ -1.86
TRIM39Q9HCM9 SNORA25.11-201ENST00000515935 105 ntBASIC3.44□□□□□ -1.86
TRIM39Q9HCM9 RNU6-58P-201ENST00000517143 103 ntBASIC3.44□□□□□ -1.86
TRIM39Q9HCM9 AL356575.1-201ENST00000603008 283 ntBASIC3.44□□□□□ -1.86
TRIM39Q9HCM9 AL078605.1-201ENST00000603529 500 ntBASIC3.44□□□□□ -1.86
TRIM39Q9HCM9 AL670379.2-201ENST00000604983 252 ntBASIC3.44□□□□□ -1.86
TRIM39Q9HCM9 TEX41-243ENST00000614173 190 ntTSL 5 BASIC3.44□□□□□ -1.86
TRIM39Q9HCM9 5S_rRNA.12-201ENST00000617631 107 ntBASIC3.44□□□□□ -1.86
TRIM39Q9HCM9 LUZP2-208ENST00000620308 4981 ntTSL 5 BASIC3.44□□□□□ -1.86
TRIM39Q9HCM9 DPY19L2P1-203ENST00000458672 3347 ntTSL 1 (best) BASIC3.44□□□□□ -1.86
TRIM39Q9HCM9 HDX-206ENST00000506585 6158 ntTSL 2 BASIC3.44□□□□□ -1.86
TRIM39Q9HCM9 AC026241.1-201ENST00000517873 2142 ntBASIC3.43□□□□□ -1.86
TRIM39Q9HCM9 MGAT4C-211ENST00000621808 2582 ntAPPRIS P1 TSL 1 (best) BASIC3.43□□□□□ -1.86
TRIM39Q9HCM9 RNU4-35P-201ENST00000362588 141 ntBASIC3.43□□□□□ -1.86
TRIM39Q9HCM9 RNU6-1301P-201ENST00000362724 104 ntBASIC3.43□□□□□ -1.86
TRIM39Q9HCM9 RNU6-486P-201ENST00000363116 107 ntBASIC3.43□□□□□ -1.86
TRIM39Q9HCM9 SET-203ENST00000372688 801 ntTSL 2 BASIC3.43□□□□□ -1.86
TRIM39Q9HCM9 Y_RNA.401-201ENST00000383965 117 ntBASIC3.43□□□□□ -1.86
TRIM39Q9HCM9 MIR183-201ENST00000384958 110 ntBASIC3.43□□□□□ -1.86
TRIM39Q9HCM9 U3.19-201ENST00000390893 196 ntBASIC3.43□□□□□ -1.86
TRIM39Q9HCM9 SNORD17-201ENST00000390930 237 ntBASIC3.43□□□□□ -1.86
TRIM39Q9HCM9 RNU6-159P-201ENST00000391080 106 ntBASIC3.43□□□□□ -1.86
TRIM39Q9HCM9 AC093578.1-201ENST00000415219 368 ntBASIC3.43□□□□□ -1.86
TRIM39Q9HCM9 EIF1P2-201ENST00000428233 350 ntBASIC3.43□□□□□ -1.86
TRIM39Q9HCM9 AC005160.1-201ENST00000432405 381 ntTSL 3 BASIC3.43□□□□□ -1.86
TRIM39Q9HCM9 AC096638.1-201ENST00000444678 216 ntBASIC3.43□□□□□ -1.86
TRIM39Q9HCM9 AC004052.1-202ENST00000505680 516 ntTSL 3 BASIC3.43□□□□□ -1.86
TRIM39Q9HCM9 RNU2-53P-201ENST00000516257 147 ntBASIC3.43□□□□□ -1.86
TRIM39Q9HCM9 SCARNA11.3-201ENST00000517276 130 ntBASIC3.43□□□□□ -1.86
TRIM39Q9HCM9 AC083973.1-205ENST00000518994 601 ntTSL 2 BASIC3.43□□□□□ -1.86
TRIM39Q9HCM9 NDUFB9P3-201ENST00000521269 501 ntBASIC3.43□□□□□ -1.86
TRIM39Q9HCM9 MIR4738-201ENST00000579134 87 ntBASIC3.43□□□□□ -1.86
TRIM39Q9HCM9 MIR5695-201ENST00000579717 85 ntBASIC3.43□□□□□ -1.86
TRIM39Q9HCM9 MIR4503-201ENST00000582187 83 ntBASIC3.43□□□□□ -1.86
TRIM39Q9HCM9 Y_RNA.772-201ENST00000606692 102 ntBASIC3.43□□□□□ -1.86
TRIM39Q9HCM9 U6.104-201ENST00000637979 90 ntBASIC3.43□□□□□ -1.86
TRIM39Q9HCM9 EYS-204ENST00000370621 10485 ntAPPRIS ALT2 TSL 1 (best) BASIC3.43□□□□□ -1.86
TRIM39Q9HCM9 AC110774.1-201ENST00000623567 2018 ntBASIC3.43□□□□□ -1.86
TRIM39Q9HCM9 MBNL1-206ENST00000357472 5256 ntTSL 5 BASIC3.42□□□□□ -1.86
TRIM39Q9HCM9 AC093725.1-201ENST00000508135 2672 ntTSL 5 BASIC3.42□□□□□ -1.86
TRIM39Q9HCM9 C5orf51-201ENST00000381647 5241 ntAPPRIS P1 TSL 1 (best) BASIC3.42□□□□□ -1.86
TRIM39Q9HCM9 PHTF2-201ENST00000248550 4778 ntTSL 1 (best) BASIC3.42□□□□□ -1.86
TRIM39Q9HCM9 Y_RNA.40-201ENST00000362645 93 ntBASIC3.42□□□□□ -1.86
TRIM39Q9HCM9 Y_RNA.439-201ENST00000384119 94 ntBASIC3.42□□□□□ -1.86
TRIM39Q9HCM9 MIR568-201ENST00000385036 95 ntBASIC3.42□□□□□ -1.86
TRIM39Q9HCM9 RNU6-1093P-201ENST00000391194 107 ntBASIC3.42□□□□□ -1.86
TRIM39Q9HCM9 CBX3P9-201ENST00000402326 552 ntBASIC3.42□□□□□ -1.86
TRIM39Q9HCM9 AC239803.1-203ENST00000411978 452 ntTSL 2 BASIC3.42□□□□□ -1.86
TRIM39Q9HCM9 ATP2B2-IT2-201ENST00000419591 507 ntTSL 2 BASIC3.42□□□□□ -1.86
TRIM39Q9HCM9 AC026355.1-201ENST00000423466 587 ntTSL 5 BASIC3.42□□□□□ -1.86
TRIM39Q9HCM9 AIMP1P2-201ENST00000425294 312 ntBASIC3.42□□□□□ -1.86
TRIM39Q9HCM9 AC007179.2-207ENST00000435557 556 ntTSL 4 BASIC3.42□□□□□ -1.86
TRIM39Q9HCM9 LINC00448-201ENST00000438352 402 ntTSL 3 BASIC3.42□□□□□ -1.86
TRIM39Q9HCM9 AL445524.1-202ENST00000440665 416 ntTSL 3 BASIC3.42□□□□□ -1.86
TRIM39Q9HCM9 RPEP5-201ENST00000441137 268 ntBASIC3.42□□□□□ -1.86
TRIM39Q9HCM9 AL731563.1-201ENST00000442202 214 ntBASIC3.42□□□□□ -1.86
TRIM39Q9HCM9 AL357552.1-201ENST00000445254 415 ntBASIC3.42□□□□□ -1.86
TRIM39Q9HCM9 LINC01198-202ENST00000458282 558 ntTSL 5 BASIC3.42□□□□□ -1.86
TRIM39Q9HCM9 U8.22-201ENST00000459141 133 ntBASIC3.42□□□□□ -1.86
TRIM39Q9HCM9 AL121594.1-201ENST00000475906 575 ntBASIC3.42□□□□□ -1.86
TRIM39Q9HCM9 RNU6-397P-201ENST00000516226 104 ntBASIC3.42□□□□□ -1.86
TRIM39Q9HCM9 RNY3P15-201ENST00000516297 97 ntBASIC3.42□□□□□ -1.86
TRIM39Q9HCM9 RNU4ATAC15P-201ENST00000516415 126 ntBASIC3.42□□□□□ -1.86
TRIM39Q9HCM9 AC093023.1-201ENST00000547375 507 ntBASIC3.42□□□□□ -1.86
TRIM39Q9HCM9 AC027176.1-201ENST00000560204 514 ntBASIC3.42□□□□□ -1.86
TRIM39Q9HCM9 AC090517.1-201ENST00000569307 266 ntBASIC3.42□□□□□ -1.86
TRIM39Q9HCM9 AC103810.1-201ENST00000579873 453 ntBASIC3.42□□□□□ -1.86
TRIM39Q9HCM9 AC011471.1-201ENST00000585766 187 ntBASIC3.42□□□□□ -1.86
TRIM39Q9HCM9 RAC1P9-201ENST00000604990 392 ntBASIC3.42□□□□□ -1.86
TRIM39Q9HCM9 AC005520.5-201ENST00000613926 164 ntBASIC3.42□□□□□ -1.86
TRIM39Q9HCM9 ST7-OT4_2.1-201ENST00000619089 172 ntBASIC3.42□□□□□ -1.86
TRIM39Q9HCM9 AC130454.1-201ENST00000622948 401 ntBASIC3.42□□□□□ -1.86
TRIM39Q9HCM9 U6.92-201ENST00000636464 89 ntBASIC3.42□□□□□ -1.86
TRIM39Q9HCM9 U6.105-201ENST00000637379 88 ntBASIC3.42□□□□□ -1.86
TRIM39Q9HCM9 PHTF2-202ENST00000275575 4541 ntTSL 1 (best) BASIC3.42□□□□□ -1.86
TRIM39Q9HCM9 NEB-204ENST00000409198 20637 ntAPPRIS P3 TSL 5 BASIC3.41□□□□□ -1.86
TRIM39Q9HCM9 RAPGEF6-202ENST00000308008 4176 ntTSL 1 (best) BASIC3.41□□□□□ -1.86
TRIM39Q9HCM9 FOXP2-206ENST00000393491 6085 ntTSL 5 BASIC3.41□□□□□ -1.86
TRIM39Q9HCM9 Y_RNA.183-201ENST00000363882 113 ntBASIC3.41□□□□□ -1.86
TRIM39Q9HCM9 RNU6-702P-201ENST00000364982 107 ntBASIC3.41□□□□□ -1.86
TRIM39Q9HCM9 RNU6-708P-201ENST00000384217 107 ntBASIC3.41□□□□□ -1.86
TRIM39Q9HCM9 RNU6-611P-201ENST00000384276 104 ntBASIC3.41□□□□□ -1.86
TRIM39Q9HCM9 MIR490-201ENST00000384865 128 ntBASIC3.41□□□□□ -1.86
TRIM39Q9HCM9 MIR10B-201ENST00000385011 110 ntBASIC3.41□□□□□ -1.86
TRIM39Q9HCM9 AL512633.1-201ENST00000399931 655 ntBASIC3.41□□□□□ -1.86
TRIM39Q9HCM9 WARS2P1-201ENST00000429678 537 ntBASIC3.41□□□□□ -1.86
TRIM39Q9HCM9 BX679664.1-201ENST00000434429 253 ntBASIC3.41□□□□□ -1.86
TRIM39Q9HCM9 RPL21P2-201ENST00000440049 481 ntBASIC3.41□□□□□ -1.86
TRIM39Q9HCM9 IPO7P1-201ENST00000442031 636 ntBASIC3.41□□□□□ -1.86
TRIM39Q9HCM9 AP000705.1-201ENST00000454567 350 ntBASIC3.41□□□□□ -1.86
TRIM39Q9HCM9 RPS3P1-201ENST00000456781 192 ntBASIC3.41□□□□□ -1.86
TRIM39Q9HCM9 RPS29P12-201ENST00000460178 152 ntBASIC3.41□□□□□ -1.86
TRIM39Q9HCM9 RPL31P41-201ENST00000477967 372 ntBASIC3.41□□□□□ -1.86
Retrieved 100 of 98,524 protein–RNA pairs in 99.4 ms