Protein–RNA interactions for Protein: Q9BTN0

LRFN3, Leucine-rich repeat and fibronectin type-III domain-containing protein 3, humanhuman

Predictions only

Length 628 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRFN3Q9BTN0 PHF6-205ENST00000625464 4434 ntAPPRIS ALT1 TSL 5 BASIC3.35□□□□□ -1.87
LRFN3Q9BTN0 FAM214A-201ENST00000261844 4217 ntAPPRIS P1 TSL 1 (best) BASIC3.35□□□□□ -1.87
LRFN3Q9BTN0 ZNF266-204ENST00000590306 3317 ntAPPRIS P1 TSL 1 (best) BASIC3.34□□□□□ -1.87
LRFN3Q9BTN0 AL021368.2-201ENST00000606125 5352 ntBASIC3.34□□□□□ -1.87
LRFN3Q9BTN0 AC099654.7-201ENST00000635788 2127 ntBASIC3.34□□□□□ -1.87
LRFN3Q9BTN0 TLK1-206ENST00000434911 2156 ntTSL 2 BASIC3.34□□□□□ -1.87
LRFN3Q9BTN0 RNU6-428P-201ENST00000362942 107 ntBASIC3.34□□□□□ -1.87
LRFN3Q9BTN0 RNU6-770P-201ENST00000363929 105 ntBASIC3.34□□□□□ -1.87
LRFN3Q9BTN0 RNU6-336P-201ENST00000364891 107 ntBASIC3.34□□□□□ -1.87
LRFN3Q9BTN0 Y_RNA.477-201ENST00000384352 108 ntBASIC3.34□□□□□ -1.87
LRFN3Q9BTN0 Y_RNA.562-201ENST00000384695 113 ntBASIC3.34□□□□□ -1.87
LRFN3Q9BTN0 RNU6-482P-201ENST00000391068 107 ntBASIC3.34□□□□□ -1.87
LRFN3Q9BTN0 AL513475.1-201ENST00000406602 315 ntBASIC3.34□□□□□ -1.87
LRFN3Q9BTN0 RNA5SP390-201ENST00000410191 113 ntBASIC3.34□□□□□ -1.87
LRFN3Q9BTN0 SIRPG-AS1-201ENST00000437384 410 ntTSL 3 BASIC3.34□□□□□ -1.87
LRFN3Q9BTN0 AL136369.1-201ENST00000437825 244 ntTSL 5 BASIC3.34□□□□□ -1.87
LRFN3Q9BTN0 AC105272.1-201ENST00000438604 198 ntBASIC3.34□□□□□ -1.87
LRFN3Q9BTN0 AL135938.1-201ENST00000443141 297 ntBASIC3.34□□□□□ -1.87
LRFN3Q9BTN0 RPS29P31-201ENST00000446147 164 ntBASIC3.34□□□□□ -1.87
LRFN3Q9BTN0 FCF1P4-201ENST00000448326 183 ntBASIC3.34□□□□□ -1.87
LRFN3Q9BTN0 FO393415.2-201ENST00000480085 343 ntBASIC3.34□□□□□ -1.87
LRFN3Q9BTN0 RPS27P26-201ENST00000494583 239 ntBASIC3.34□□□□□ -1.87
LRFN3Q9BTN0 GZMAP1-201ENST00000503054 631 ntBASIC3.34□□□□□ -1.87
LRFN3Q9BTN0 AC004052.1-202ENST00000505680 516 ntTSL 3 BASIC3.34□□□□□ -1.87
LRFN3Q9BTN0 AKIRIN2P1-201ENST00000505898 352 ntBASIC3.34□□□□□ -1.87
LRFN3Q9BTN0 OR56A5-202ENST00000532411 942 ntAPPRIS P1 BASIC3.34□□□□□ -1.87
LRFN3Q9BTN0 POC1B-211ENST00000549504 581 ntTSL 5 BASIC3.34□□□□□ -1.87
LRFN3Q9BTN0 SARNP-203ENST00000552080 726 ntTSL 2 BASIC3.34□□□□□ -1.87
LRFN3Q9BTN0 AC090517.1-201ENST00000569307 266 ntBASIC3.34□□□□□ -1.87
LRFN3Q9BTN0 CPDP1-201ENST00000579660 283 ntBASIC3.34□□□□□ -1.87
LRFN3Q9BTN0 AC019159.1-201ENST00000605094 187 ntBASIC3.34□□□□□ -1.87
LRFN3Q9BTN0 U7.8-201ENST00000619968 63 ntBASIC3.34□□□□□ -1.87
LRFN3Q9BTN0 PRKD3-202ENST00000379066 6111 ntAPPRIS P1 TSL 5 BASIC3.34□□□□□ -1.88
LRFN3Q9BTN0 TET2-204ENST00000413648 4973 ntTSL 1 (best) BASIC3.34□□□□□ -1.88
LRFN3Q9BTN0 SIRT1-203ENST00000406900 3295 ntTSL 2 BASIC3.34□□□□□ -1.88
LRFN3Q9BTN0 NR3C1-212ENST00000504572 3389 ntAPPRIS ALT1 TSL 1 (best) BASIC3.34□□□□□ -1.88
LRFN3Q9BTN0 OR8K3-203ENST00000641662 2438 ntAPPRIS P1 BASIC3.33□□□□□ -1.88
LRFN3Q9BTN0 APCS-201ENST00000255040 926 ntAPPRIS P1 TSL 1 (best) BASIC3.33□□□□□ -1.88
LRFN3Q9BTN0 Y_RNA.19-201ENST00000362462 99 ntBASIC3.33□□□□□ -1.88
LRFN3Q9BTN0 SNORA20.1-201ENST00000364790 130 ntBASIC3.33□□□□□ -1.88
LRFN3Q9BTN0 CLDN10-202ENST00000376855 701 ntTSL 2 BASIC3.33□□□□□ -1.88
LRFN3Q9BTN0 RNU6-1062P-201ENST00000383908 107 ntBASIC3.33□□□□□ -1.88
LRFN3Q9BTN0 AL139132.1-201ENST00000431587 344 ntBASIC3.33□□□□□ -1.88
LRFN3Q9BTN0 AC005160.1-201ENST00000432405 381 ntTSL 3 BASIC3.33□□□□□ -1.88
LRFN3Q9BTN0 Z68323.1-201ENST00000450365 519 ntTSL 3 BASIC3.33□□□□□ -1.88
LRFN3Q9BTN0 MTND4LP30-201ENST00000454092 297 ntBASIC3.33□□□□□ -1.88
LRFN3Q9BTN0 RNU7-169P-201ENST00000459456 61 ntBASIC3.33□□□□□ -1.88
LRFN3Q9BTN0 HMGB3P17-201ENST00000504195 649 ntBASIC3.33□□□□□ -1.88
LRFN3Q9BTN0 AC008869.1-201ENST00000510938 442 ntTSL 2 BASIC3.33□□□□□ -1.88
LRFN3Q9BTN0 LINC01337-201ENST00000515871 440 ntTSL 3 BASIC3.33□□□□□ -1.88
LRFN3Q9BTN0 SNORA31.18-201ENST00000517043 134 ntBASIC3.33□□□□□ -1.88
LRFN3Q9BTN0 RNU6-548P-201ENST00000517083 115 ntBASIC3.33□□□□□ -1.88
LRFN3Q9BTN0 UQCRB-202ENST00000517523 515 ntTSL 2 BASIC3.33□□□□□ -1.88
LRFN3Q9BTN0 EGLN3-AS1-201ENST00000555922 308 ntTSL 3 BASIC3.33□□□□□ -1.88
LRFN3Q9BTN0 AC131274.4-201ENST00000577879 398 ntTSL 3 BASIC3.33□□□□□ -1.88
LRFN3Q9BTN0 VN1R91P-201ENST00000594377 169 ntBASIC3.33□□□□□ -1.88
LRFN3Q9BTN0 uc_338.14-201ENST00000613162 166 ntBASIC3.33□□□□□ -1.88
LRFN3Q9BTN0 AC245427.9-201ENST00000633713 53 ntAPPRIS P1 BASIC3.33□□□□□ -1.88
LRFN3Q9BTN0 U6.104-201ENST00000637979 90 ntBASIC3.33□□□□□ -1.88
LRFN3Q9BTN0 UACA-202ENST00000379983 4859 ntAPPRIS ALT2 TSL 5 BASIC3.33□□□□□ -1.88
LRFN3Q9BTN0 MGA-211ENST00000570161 11859 ntAPPRIS P4 TSL 5 BASIC3.33□□□□□ -1.88
LRFN3Q9BTN0 WNK3-205ENST00000620763 5400 ntTSL 5 BASIC3.33□□□□□ -1.88
LRFN3Q9BTN0 RAPGEF6-202ENST00000308008 4176 ntTSL 1 (best) BASIC3.32□□□□□ -1.88
LRFN3Q9BTN0 CCDC141-202ENST00000409284 6960 ntAPPRIS P2 TSL 1 (best) BASIC3.32□□□□□ -1.88
LRFN3Q9BTN0 RNF38-210ENST00000611646 5185 ntTSL 5 BASIC3.32□□□□□ -1.88
LRFN3Q9BTN0 ANGPTL1-201ENST00000234816 3348 ntAPPRIS P1 TSL 1 (best) BASIC3.32□□□□□ -1.88
LRFN3Q9BTN0 AC025164.2-202ENST00000499685 5699 ntTSL 3 BASIC3.32□□□□□ -1.88
LRFN3Q9BTN0 CD24P4-201ENST00000382840 243 ntBASIC3.32□□□□□ -1.88
LRFN3Q9BTN0 SNORA51.11-201ENST00000384442 131 ntBASIC3.32□□□□□ -1.88
LRFN3Q9BTN0 Y_RNA.515-201ENST00000384535 112 ntBASIC3.32□□□□□ -1.88
LRFN3Q9BTN0 Y_RNA.526-201ENST00000384572 110 ntBASIC3.32□□□□□ -1.88
LRFN3Q9BTN0 MIR625-201ENST00000385047 85 ntBASIC3.32□□□□□ -1.88
LRFN3Q9BTN0 RNU6-1093P-201ENST00000391194 107 ntBASIC3.32□□□□□ -1.88
LRFN3Q9BTN0 BTF3L4P2-201ENST00000392798 346 ntBASIC3.32□□□□□ -1.88
LRFN3Q9BTN0 AC012370.1-201ENST00000419244 530 ntTSL 3 BASIC3.32□□□□□ -1.88
LRFN3Q9BTN0 AC022018.1-201ENST00000430685 241 ntBASIC3.32□□□□□ -1.88
LRFN3Q9BTN0 AC008154.1-201ENST00000453087 327 ntTSL 3 BASIC3.32□□□□□ -1.88
LRFN3Q9BTN0 RPL39P38-201ENST00000467018 153 ntBASIC3.32□□□□□ -1.88
LRFN3Q9BTN0 AC025465.3-201ENST00000510570 311 ntBASIC3.32□□□□□ -1.88
LRFN3Q9BTN0 RNU6-397P-201ENST00000516226 104 ntBASIC3.32□□□□□ -1.88
LRFN3Q9BTN0 RNU6-579P-201ENST00000516879 102 ntBASIC3.32□□□□□ -1.88
LRFN3Q9BTN0 SNORA40.15-201ENST00000516884 107 ntBASIC3.32□□□□□ -1.88
LRFN3Q9BTN0 RNU6-612P-201ENST00000516909 102 ntBASIC3.32□□□□□ -1.88
LRFN3Q9BTN0 RNU6-897P-201ENST00000517135 105 ntBASIC3.32□□□□□ -1.88
LRFN3Q9BTN0 CKS1BP7-201ENST00000522230 235 ntBASIC3.32□□□□□ -1.88
LRFN3Q9BTN0 MIR5047-201ENST00000579212 100 ntBASIC3.32□□□□□ -1.88
LRFN3Q9BTN0 AC025754.2-201ENST00000606491 432 ntBASIC3.32□□□□□ -1.88
LRFN3Q9BTN0 MIR3976-201ENST00000606807 139 ntBASIC3.32□□□□□ -1.88
LRFN3Q9BTN0 AC103858.1-201ENST00000607019 476 ntTSL 3 BASIC3.32□□□□□ -1.88
LRFN3Q9BTN0 MIR8076-201ENST00000611401 83 ntBASIC3.32□□□□□ -1.88
LRFN3Q9BTN0 MIR1244-1-201ENST00000612829 85 ntBASIC3.32□□□□□ -1.88
LRFN3Q9BTN0 AC110079.1-202ENST00000635213 138 ntBASIC3.32□□□□□ -1.88
LRFN3Q9BTN0 MIR1244-3-201ENST00000635744 85 ntBASIC3.32□□□□□ -1.88
LRFN3Q9BTN0 MIR1244-2-201ENST00000636449 85 ntBASIC3.32□□□□□ -1.88
LRFN3Q9BTN0 MIR1244-4-202ENST00000636813 85 ntBASIC3.32□□□□□ -1.88
LRFN3Q9BTN0 ADAT2-203ENST00000606514 6651 ntTSL 1 (best) BASIC3.32□□□□□ -1.88
LRFN3Q9BTN0 MTND5P6-201ENST00000422338 1798 ntBASIC3.32□□□□□ -1.88
LRFN3Q9BTN0 OXR1-207ENST00000497705 2007 ntTSL 2 BASIC3.32□□□□□ -1.88
LRFN3Q9BTN0 ZNF83-201ENST00000301096 2599 ntAPPRIS P1 TSL 3 BASIC3.32□□□□□ -1.88
LRFN3Q9BTN0 LTN1-207ENST00000614971 7756 ntTSL 1 (best) BASIC3.32□□□□□ -1.88
Retrieved 100 of 98,524 protein–RNA pairs in 169.9 ms