Protein–RNA interactions for Protein: Q96RU2

USP28, Ubiquitin carboxyl-terminal hydrolase 28, humanhuman

Predictions only

Length 1,077 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP28Q96RU2 AL445529.1-201ENST00000398713 389 ntBASIC2.33□□□□□ -2.04
USP28Q96RU2 MIR548K-201ENST00000408406 116 ntBASIC2.33□□□□□ -2.04
USP28Q96RU2 RNU6-1304P-201ENST00000411374 106 ntBASIC2.33□□□□□ -2.04
USP28Q96RU2 EIF4EP4-201ENST00000424916 578 ntBASIC2.33□□□□□ -2.04
USP28Q96RU2 AC114501.3-201ENST00000453648 164 ntTSL 5 BASIC2.33□□□□□ -2.04
USP28Q96RU2 AC130509.1-201ENST00000464158 433 ntBASIC2.33□□□□□ -2.04
USP28Q96RU2 ODF2L-216ENST00000486215 311 ntTSL 2 BASIC2.33□□□□□ -2.04
USP28Q96RU2 MTND5P5-201ENST00000503764 376 ntBASIC2.33□□□□□ -2.04
USP28Q96RU2 LINC02118-202ENST00000510583 419 ntTSL 3 BASIC2.33□□□□□ -2.04
USP28Q96RU2 AC008892.1-201ENST00000511861 384 ntTSL 3 BASIC2.33□□□□□ -2.04
USP28Q96RU2 Y_RNA.691-201ENST00000516611 103 ntBASIC2.33□□□□□ -2.04
USP28Q96RU2 SNORA43.2-201ENST00000516652 128 ntBASIC2.33□□□□□ -2.04
USP28Q96RU2 RNU1-40P-201ENST00000516816 164 ntBASIC2.33□□□□□ -2.04
USP28Q96RU2 RNU1-97P-201ENST00000516872 164 ntBASIC2.33□□□□□ -2.04
USP28Q96RU2 AC015845.1-201ENST00000579285 335 ntTSL 3 BASIC2.33□□□□□ -2.04
USP28Q96RU2 POLR3GP2-201ENST00000588366 668 ntBASIC2.33□□□□□ -2.04
USP28Q96RU2 C8orf59P2-201ENST00000603441 271 ntBASIC2.33□□□□□ -2.04
USP28Q96RU2 AL359757.2-201ENST00000624309 274 ntBASIC2.33□□□□□ -2.04
USP28Q96RU2 TTC6-201ENST00000267368 1681 ntTSL 5 BASIC2.33□□□□□ -2.04
USP28Q96RU2 KIF20B-202ENST00000371728 6419 ntAPPRIS ALT2 TSL 1 (best) BASIC2.33□□□□□ -2.04
USP28Q96RU2 CUL2-206ENST00000421317 2376 ntTSL 2 BASIC2.32□□□□□ -2.04
USP28Q96RU2 DLEU2_6.3-201ENST00000340052 136 ntBASIC2.32□□□□□ -2.04
USP28Q96RU2 RNU4-73P-201ENST00000363164 141 ntBASIC2.32□□□□□ -2.04
USP28Q96RU2 SNORA3A-201ENST00000364113 130 ntBASIC2.32□□□□□ -2.04
USP28Q96RU2 RNU6-336P-201ENST00000364891 107 ntBASIC2.32□□□□□ -2.04
USP28Q96RU2 RNU5E-7P-201ENST00000365290 117 ntBASIC2.32□□□□□ -2.04
USP28Q96RU2 SNORA6-201ENST00000384033 151 ntBASIC2.32□□□□□ -2.04
USP28Q96RU2 Y_RNA.473-201ENST00000384333 102 ntBASIC2.32□□□□□ -2.04
USP28Q96RU2 SNORA67.3-201ENST00000384366 140 ntBASIC2.32□□□□□ -2.04
USP28Q96RU2 RNU6-306P-201ENST00000384617 107 ntBASIC2.32□□□□□ -2.04
USP28Q96RU2 SNORA64-201ENST00000384674 134 ntBASIC2.32□□□□□ -2.04
USP28Q96RU2 MIR218-1-201ENST00000384999 110 ntBASIC2.32□□□□□ -2.04
USP28Q96RU2 AL133475.1-201ENST00000404414 305 ntBASIC2.32□□□□□ -2.04
USP28Q96RU2 RNU6-1140P-201ENST00000410517 106 ntBASIC2.32□□□□□ -2.04
USP28Q96RU2 MRLN-201ENST00000414264 422 ntAPPRIS P2 TSL 1 (best) BASIC2.32□□□□□ -2.04
USP28Q96RU2 TOMM20P4-201ENST00000427861 435 ntBASIC2.32□□□□□ -2.04
USP28Q96RU2 AC093019.1-201ENST00000443135 252 ntBASIC2.32□□□□□ -2.04
USP28Q96RU2 MTND1P17-201ENST00000448961 204 ntBASIC2.32□□□□□ -2.04
USP28Q96RU2 ATP1B3-AS1-201ENST00000492725 376 ntTSL 5 BASIC2.32□□□□□ -2.04
USP28Q96RU2 AKIRIN2P1-201ENST00000505898 352 ntBASIC2.32□□□□□ -2.04
USP28Q96RU2 MTCYBP40-201ENST00000509390 1135 ntBASIC2.32□□□□□ -2.04
USP28Q96RU2 ACA59.2-201ENST00000517061 156 ntBASIC2.32□□□□□ -2.04
USP28Q96RU2 AP004607.1-201ENST00000524456 203 ntBASIC2.32□□□□□ -2.04
USP28Q96RU2 AC026371.1-201ENST00000551867 419 ntBASIC2.32□□□□□ -2.04
USP28Q96RU2 TRAV32-201ENST00000553993 340 ntBASIC2.32□□□□□ -2.04
USP28Q96RU2 AC023906.2-201ENST00000558343 462 ntTSL 3 BASIC2.32□□□□□ -2.04
USP28Q96RU2 SNORD53-201ENST00000579969 78 ntBASIC2.32□□□□□ -2.04
USP28Q96RU2 MIR5089-201ENST00000580047 84 ntBASIC2.32□□□□□ -2.04
USP28Q96RU2 FGF7P1-201ENST00000582820 288 ntBASIC2.32□□□□□ -2.04
USP28Q96RU2 AL391813.1-201ENST00000603098 260 ntBASIC2.32□□□□□ -2.04
USP28Q96RU2 LINC02112-205ENST00000606744 236 ntTSL 1 (best) BASIC2.32□□□□□ -2.04
USP28Q96RU2 Y_RNA.783-201ENST00000613546 102 ntBASIC2.32□□□□□ -2.04
USP28Q96RU2 DLEU2_6.2-201ENST00000620994 136 ntBASIC2.32□□□□□ -2.04
USP28Q96RU2 MIR6873-201ENST00000622788 63 ntBASIC2.32□□□□□ -2.04
USP28Q96RU2 MIR1302-1-201ENST00000637932 143 ntBASIC2.32□□□□□ -2.04
USP28Q96RU2 U4.7-201ENST00000638126 106 ntBASIC2.32□□□□□ -2.04
USP28Q96RU2 PRKD3-201ENST00000234179 5900 ntAPPRIS P1 TSL 1 (best) BASIC2.32□□□□□ -2.04
USP28Q96RU2 LINC01592-202ENST00000518540 2367 ntTSL 2 BASIC2.32□□□□□ -2.04
USP28Q96RU2 RNU6-858P-201ENST00000362436 107 ntBASIC2.31□□□□□ -2.04
USP28Q96RU2 Y_RNA.58-201ENST00000362807 102 ntBASIC2.31□□□□□ -2.04
USP28Q96RU2 Y_RNA.151-201ENST00000363566 112 ntBASIC2.31□□□□□ -2.04
USP28Q96RU2 Y_RNA.154-201ENST00000363624 102 ntBASIC2.31□□□□□ -2.04
USP28Q96RU2 RNY3P1-201ENST00000365085 102 ntBASIC2.31□□□□□ -2.04
USP28Q96RU2 RNY3-201ENST00000365484 102 ntBASIC2.31□□□□□ -2.04
USP28Q96RU2 RNU6-1013P-201ENST00000384180 107 ntBASIC2.31□□□□□ -2.04
USP28Q96RU2 Y_RNA.490-201ENST00000384413 102 ntBASIC2.31□□□□□ -2.04
USP28Q96RU2 SNORD116-20-201ENST00000384529 92 ntBASIC2.31□□□□□ -2.04
USP28Q96RU2 AL078595.1-201ENST00000404458 226 ntBASIC2.31□□□□□ -2.04
USP28Q96RU2 RAP1BP3-201ENST00000407180 549 ntBASIC2.31□□□□□ -2.04
USP28Q96RU2 AC092660.1-201ENST00000420648 371 ntTSL 2 BASIC2.31□□□□□ -2.04
USP28Q96RU2 AL669831.2-201ENST00000422528 456 ntTSL 5 BASIC2.31□□□□□ -2.04
USP28Q96RU2 RPS3AP52-201ENST00000435639 297 ntBASIC2.31□□□□□ -2.04
USP28Q96RU2 LINC01710-201ENST00000446002 390 ntTSL 5 BASIC2.31□□□□□ -2.04
USP28Q96RU2 AC026801.1-201ENST00000497178 464 ntBASIC2.31□□□□□ -2.04
USP28Q96RU2 LINC02491-201ENST00000504710 403 ntTSL 2 BASIC2.31□□□□□ -2.04
USP28Q96RU2 AC008869.1-201ENST00000510938 442 ntTSL 2 BASIC2.31□□□□□ -2.04
USP28Q96RU2 SNORA31.6-201ENST00000516241 130 ntBASIC2.31□□□□□ -2.04
USP28Q96RU2 LINC02055-204ENST00000521034 432 ntTSL 5 BASIC2.31□□□□□ -2.04
USP28Q96RU2 AP003174.2-201ENST00000544663 294 ntTSL 3 BASIC2.31□□□□□ -2.04
USP28Q96RU2 LINC02293-201ENST00000548335 574 ntTSL 5 BASIC2.31□□□□□ -2.04
USP28Q96RU2 AL355375.2-201ENST00000574825 175 ntBASIC2.31□□□□□ -2.04
USP28Q96RU2 MIR4795-201ENST00000584182 89 ntBASIC2.31□□□□□ -2.04
USP28Q96RU2 SNRPGP19-201ENST00000603826 189 ntBASIC2.31□□□□□ -2.04
USP28Q96RU2 AC069294.1-201ENST00000608397 350 ntBASIC2.31□□□□□ -2.04
USP28Q96RU2 AC022017.1-201ENST00000608793 559 ntTSL 4 BASIC2.31□□□□□ -2.04
USP28Q96RU2 UBE2E2-206ENST00000613545 282 ntTSL 5 BASIC2.31□□□□□ -2.04
USP28Q96RU2 AC009233.1-201ENST00000616477 371 ntBASIC2.31□□□□□ -2.04
USP28Q96RU2 AC244517.12-201ENST00000623581 663 ntBASIC2.31□□□□□ -2.04
USP28Q96RU2 AL359697.1-201ENST00000624879 587 ntBASIC2.31□□□□□ -2.04
USP28Q96RU2 SCARNA4-202ENST00000625402 129 ntBASIC2.31□□□□□ -2.04
USP28Q96RU2 LINC00836-202ENST00000626230 1640 ntTSL 2 BASIC2.31□□□□□ -2.04
USP28Q96RU2 RNU6-128P-201ENST00000383976 107 ntBASIC2.3□□□□□ -2.04
USP28Q96RU2 RNU6-214P-201ENST00000384130 107 ntBASIC2.3□□□□□ -2.04
USP28Q96RU2 RNU6-301P-201ENST00000384277 107 ntBASIC2.3□□□□□ -2.04
USP28Q96RU2 RNU6-325P-201ENST00000411132 105 ntBASIC2.3□□□□□ -2.04
USP28Q96RU2 AC004383.1-201ENST00000438135 289 ntBASIC2.3□□□□□ -2.04
USP28Q96RU2 AC013470.1-201ENST00000453438 462 ntBASIC2.3□□□□□ -2.04
USP28Q96RU2 AC096745.1-201ENST00000509945 370 ntBASIC2.3□□□□□ -2.04
USP28Q96RU2 MTND3P22-201ENST00000510932 243 ntBASIC2.3□□□□□ -2.04
USP28Q96RU2 AC008549.1-201ENST00000512900 643 ntBASIC2.3□□□□□ -2.04
Retrieved 100 of 98,524 protein–RNA pairs in 130.1 ms