Protein–RNA interactions for Protein: Q96MR9

ZNF560, Zinc finger protein 560, humanhuman

Predictions only

Length 790 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF560Q96MR9 MIR1248-201ENST00000629190 106 ntBASIC1.97□□□□□ -2.09
ZNF560Q96MR9 ATF1-201ENST00000262053 2181 ntAPPRIS P1 TSL 1 (best) BASIC1.96□□□□□ -2.1
ZNF560Q96MR9 SNORD115-3-201ENST00000363100 82 ntBASIC1.96□□□□□ -2.1
ZNF560Q96MR9 SNORD32B-201ENST00000364460 84 ntBASIC1.96□□□□□ -2.1
ZNF560Q96MR9 RNU6-827P-201ENST00000365553 106 ntBASIC1.96□□□□□ -2.1
ZNF560Q96MR9 MIR9-3-201ENST00000385084 90 ntBASIC1.96□□□□□ -2.1
ZNF560Q96MR9 BTF3L4P2-201ENST00000392798 346 ntBASIC1.96□□□□□ -2.1
ZNF560Q96MR9 DEFB108C-201ENST00000400154 252 ntBASIC1.96□□□□□ -2.1
ZNF560Q96MR9 LINC00428-201ENST00000415620 227 ntTSL 5 BASIC1.96□□□□□ -2.1
ZNF560Q96MR9 AL451074.3-201ENST00000437709 472 ntBASIC1.96□□□□□ -2.1
ZNF560Q96MR9 AL591501.1-201ENST00000439992 495 ntTSL 5 BASIC1.96□□□□□ -2.1
ZNF560Q96MR9 GACAT1-202ENST00000441383 540 ntTSL 4 BASIC1.96□□□□□ -2.1
ZNF560Q96MR9 snoU13.23-201ENST00000458863 104 ntBASIC1.96□□□□□ -2.1
ZNF560Q96MR9 RNU6-333P-201ENST00000459117 107 ntBASIC1.96□□□□□ -2.1
ZNF560Q96MR9 AC132942.1-201ENST00000486753 483 ntBASIC1.96□□□□□ -2.1
ZNF560Q96MR9 AC104564.1-201ENST00000493028 407 ntBASIC1.96□□□□□ -2.1
ZNF560Q96MR9 RPL23AP63-201ENST00000498752 471 ntBASIC1.96□□□□□ -2.1
ZNF560Q96MR9 HMGB3P17-201ENST00000504195 649 ntBASIC1.96□□□□□ -2.1
ZNF560Q96MR9 AC008539.1-201ENST00000507653 482 ntTSL 3 BASIC1.96□□□□□ -2.1
ZNF560Q96MR9 AK3P2-201ENST00000507976 429 ntBASIC1.96□□□□□ -2.1
ZNF560Q96MR9 MTND2P38-201ENST00000522536 667 ntBASIC1.96□□□□□ -2.1
ZNF560Q96MR9 AC114550.2-201ENST00000524008 397 ntTSL 3 BASIC1.96□□□□□ -2.1
ZNF560Q96MR9 AC133480.1-201ENST00000547563 381 ntTSL 3 BASIC1.96□□□□□ -2.1
ZNF560Q96MR9 AC090115.3-201ENST00000553218 849 ntBASIC1.96□□□□□ -2.1
ZNF560Q96MR9 AC103996.1-201ENST00000555468 102 ntBASIC1.96□□□□□ -2.1
ZNF560Q96MR9 AC005154.1-222ENST00000579024 341 ntTSL 5 BASIC1.96□□□□□ -2.1
ZNF560Q96MR9 AC036222.2-201ENST00000579033 333 ntTSL 3 BASIC1.96□□□□□ -2.1
ZNF560Q96MR9 MIR4424-201ENST00000585257 86 ntBASIC1.96□□□□□ -2.1
ZNF560Q96MR9 AL773524.1-201ENST00000614065 229 ntBASIC1.96□□□□□ -2.1
ZNF560Q96MR9 AC005296.1-201ENST00000616145 209 ntBASIC1.96□□□□□ -2.1
ZNF560Q96MR9 AL591030.1-201ENST00000626131 627 ntTSL 3 BASIC1.96□□□□□ -2.1
ZNF560Q96MR9 ZBBX-205ENST00000455345 3185 ntAPPRIS ALT2 TSL 1 (best) BASIC1.96□□□□□ -2.1
ZNF560Q96MR9 C1orf141-205ENST00000475209 2079 ntAPPRIS ALT2 TSL 5 BASIC1.95□□□□□ -2.1
ZNF560Q96MR9 AL161668.1-201ENST00000320322 358 ntTSL 1 (best) BASIC1.95□□□□□ -2.1
ZNF560Q96MR9 Y_RNA.99-201ENST00000363138 105 ntBASIC1.95□□□□□ -2.1
ZNF560Q96MR9 RNU6-1164P-201ENST00000364428 107 ntBASIC1.95□□□□□ -2.1
ZNF560Q96MR9 SNORA16.1-201ENST00000364597 132 ntBASIC1.95□□□□□ -2.1
ZNF560Q96MR9 RNU6-1119P-201ENST00000384349 108 ntBASIC1.95□□□□□ -2.1
ZNF560Q96MR9 AC007314.1-201ENST00000414538 565 ntTSL 4 BASIC1.95□□□□□ -2.1
ZNF560Q96MR9 HMGN2P19-201ENST00000425149 265 ntBASIC1.95□□□□□ -2.1
ZNF560Q96MR9 RPL23AP95-201ENST00000426806 265 ntBASIC1.95□□□□□ -2.1
ZNF560Q96MR9 AL133396.1-201ENST00000432048 687 ntBASIC1.95□□□□□ -2.1
ZNF560Q96MR9 AL591806.2-201ENST00000433122 173 ntBASIC1.95□□□□□ -2.1
ZNF560Q96MR9 AC007677.1-201ENST00000445757 515 ntBASIC1.95□□□□□ -2.1
ZNF560Q96MR9 AC108752.1-201ENST00000484679 576 ntTSL 5 BASIC1.95□□□□□ -2.1
ZNF560Q96MR9 AC145146.1-201ENST00000496370 254 ntBASIC1.95□□□□□ -2.1
ZNF560Q96MR9 AC093259.1-201ENST00000509755 300 ntBASIC1.95□□□□□ -2.1
ZNF560Q96MR9 AC010457.1-201ENST00000510469 458 ntTSL 3 BASIC1.95□□□□□ -2.1
ZNF560Q96MR9 RNU6-548P-201ENST00000517083 115 ntBASIC1.95□□□□□ -2.1
ZNF560Q96MR9 AL358937.1-201ENST00000524512 336 ntTSL 2 BASIC1.95□□□□□ -2.1
ZNF560Q96MR9 TMCO5B-203ENST00000529623 509 ntTSL 4 BASIC1.95□□□□□ -2.1
ZNF560Q96MR9 OR11H5P-201ENST00000554039 926 ntBASIC1.95□□□□□ -2.1
ZNF560Q96MR9 AC245748.3-201ENST00000588710 241 ntTSL 3 BASIC1.95□□□□□ -2.1
ZNF560Q96MR9 AP000654.2-201ENST00000605633 586 ntBASIC1.95□□□□□ -2.1
ZNF560Q96MR9 RNU6-85P-201ENST00000605989 107 ntBASIC1.95□□□□□ -2.1
ZNF560Q96MR9 AC245008.1-201ENST00000608123 476 ntBASIC1.95□□□□□ -2.1
ZNF560Q96MR9 HULC.1-201ENST00000612720 240 ntBASIC1.95□□□□□ -2.1
ZNF560Q96MR9 AC092268.1-201ENST00000342691 405 ntBASIC1.94□□□□□ -2.1
ZNF560Q96MR9 RNU6-743P-201ENST00000364151 106 ntBASIC1.94□□□□□ -2.1
ZNF560Q96MR9 RNU4-56P-201ENST00000364700 142 ntBASIC1.94□□□□□ -2.1
ZNF560Q96MR9 SNORA26.3-201ENST00000391119 136 ntBASIC1.94□□□□□ -2.1
ZNF560Q96MR9 AL606923.1-201ENST00000406616 190 ntBASIC1.94□□□□□ -2.1
ZNF560Q96MR9 MTCYBP2-201ENST00000407745 171 ntBASIC1.94□□□□□ -2.1
ZNF560Q96MR9 RNU4-55P-201ENST00000410731 137 ntBASIC1.94□□□□□ -2.1
ZNF560Q96MR9 KRTAP25-1-201ENST00000416044 370 ntAPPRIS P1 BASIC1.94□□□□□ -2.1
ZNF560Q96MR9 AL590135.1-201ENST00000422215 156 ntBASIC1.94□□□□□ -2.1
ZNF560Q96MR9 BX510359.4-201ENST00000423750 193 ntBASIC1.94□□□□□ -2.1
ZNF560Q96MR9 AC019205.3-201ENST00000424573 156 ntBASIC1.94□□□□□ -2.1
ZNF560Q96MR9 AL606489.2-201ENST00000433886 234 ntBASIC1.94□□□□□ -2.1
ZNF560Q96MR9 RPL7P54-201ENST00000438336 674 ntBASIC1.94□□□□□ -2.1
ZNF560Q96MR9 AC016700.2-201ENST00000446011 156 ntBASIC1.94□□□□□ -2.1
ZNF560Q96MR9 AL035415.1-201ENST00000447150 289 ntTSL 5 BASIC1.94□□□□□ -2.1
ZNF560Q96MR9 AC005062.1-201ENST00000457921 566 ntTSL 3 BASIC1.94□□□□□ -2.1
ZNF560Q96MR9 TPT1P7-201ENST00000458300 517 ntBASIC1.94□□□□□ -2.1
ZNF560Q96MR9 SNRPGP7-201ENST00000469016 106 ntBASIC1.94□□□□□ -2.1
ZNF560Q96MR9 RN7SL274P-201ENST00000492268 272 ntBASIC1.94□□□□□ -2.1
ZNF560Q96MR9 AC015911.1-201ENST00000495111 156 ntBASIC1.94□□□□□ -2.1
ZNF560Q96MR9 AC116563.1-201ENST00000505454 396 ntTSL 3 BASIC1.94□□□□□ -2.1
ZNF560Q96MR9 SNORA40.12-201ENST00000516329 111 ntBASIC1.94□□□□□ -2.1
ZNF560Q96MR9 AC091047.1-201ENST00000533344 552 ntTSL 4 BASIC1.94□□□□□ -2.1
ZNF560Q96MR9 HSPE1P4-201ENST00000550617 308 ntBASIC1.94□□□□□ -2.1
ZNF560Q96MR9 MIR4299-201ENST00000577899 72 ntBASIC1.94□□□□□ -2.1
ZNF560Q96MR9 AC243960.4-201ENST00000600532 288 ntBASIC1.94□□□□□ -2.1
ZNF560Q96MR9 AC012493.3-201ENST00000604494 112 ntBASIC1.94□□□□□ -2.1
ZNF560Q96MR9 AP001330.5-201ENST00000607176 411 ntBASIC1.94□□□□□ -2.1
ZNF560Q96MR9 LINC01206-214ENST00000610910 456 ntTSL 5 BASIC1.94□□□□□ -2.1
ZNF560Q96MR9 DSCR8-208ENST00000614538 403 ntAPPRIS P5 TSL 5 BASIC1.94□□□□□ -2.1
ZNF560Q96MR9 AC084768.2-201ENST00000622736 221 ntBASIC1.94□□□□□ -2.1
ZNF560Q96MR9 XIRP2-201ENST00000295237 5246 ntTSL 2 BASIC1.94□□□□□ -2.1
ZNF560Q96MR9 PI15-201ENST00000260113 6732 ntAPPRIS P1 TSL 1 (best) BASIC1.93□□□□□ -2.1
ZNF560Q96MR9 AC008163.1-205ENST00000413944 4649 ntTSL 1 (best) BASIC1.93□□□□□ -2.1
ZNF560Q96MR9 RNU1-58P-201ENST00000362413 163 ntBASIC1.93□□□□□ -2.1
ZNF560Q96MR9 RNU6-1042P-201ENST00000384204 107 ntBASIC1.93□□□□□ -2.1
ZNF560Q96MR9 MIR764-201ENST00000390811 85 ntBASIC1.93□□□□□ -2.1
ZNF560Q96MR9 RNU11-3P-201ENST00000391111 133 ntBASIC1.93□□□□□ -2.1
ZNF560Q96MR9 RNA5SP212-201ENST00000391223 107 ntBASIC1.93□□□□□ -2.1
ZNF560Q96MR9 AL353743.2-202ENST00000439544 473 ntTSL 3 BASIC1.93□□□□□ -2.1
ZNF560Q96MR9 LINC02264-201ENST00000442020 576 ntTSL 3 BASIC1.93□□□□□ -2.1
ZNF560Q96MR9 AL356124.2-201ENST00000442449 391 ntTSL 5 BASIC1.93□□□□□ -2.1
ZNF560Q96MR9 MTCO2P3-201ENST00000442543 421 ntBASIC1.93□□□□□ -2.1
Retrieved 100 of 98,524 protein–RNA pairs in 117.9 ms