Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 RNU7-115P-201ENST00000516433 55 ntBASIC4.11□□□□□ -1.75
MSX1P28360 Y_RNA.692-201ENST00000516627 105 ntBASIC4.11□□□□□ -1.75
MSX1P28360 IGHVIII-2-1-201ENST00000518843 291 ntBASIC4.11□□□□□ -1.75
MSX1P28360 AC090985.1-201ENST00000554440 480 ntTSL 2 BASIC4.11□□□□□ -1.75
MSX1P28360 ARF4P1-201ENST00000605447 541 ntBASIC4.11□□□□□ -1.75
MSX1P28360 MIR548AY-201ENST00000617669 107 ntBASIC4.11□□□□□ -1.75
MSX1P28360 CCL14-203ENST00000620991 426 ntTSL 1 (best) BASIC4.11□□□□□ -1.75
MSX1P28360 AC104971.4-201ENST00000622763 249 ntTSL 5 BASIC4.11□□□□□ -1.75
MSX1P28360 ANKAR-201ENST00000313581 4391 ntAPPRIS P1 TSL 1 (best) BASIC4.11□□□□□ -1.75
MSX1P28360 SEC31A-237ENST00000513858 3687 ntTSL 1 (best) BASIC4.11□□□□□ -1.75
MSX1P28360 AGBL2-201ENST00000357610 3295 ntAPPRIS ALT2 TSL 5 BASIC4.11□□□□□ -1.75
MSX1P28360 LBR-202ENST00000338179 3812 ntAPPRIS P1 TSL 5 BASIC4.11□□□□□ -1.75
MSX1P28360 USH2A-202ENST00000366942 6320 ntTSL 1 (best) BASIC4.1□□□□□ -1.75
MSX1P28360 DNAH8-205ENST00000449981 12940 ntTSL 5 BASIC4.1□□□□□ -1.75
MSX1P28360 UBA6-AS1-203ENST00000500538 3352 ntTSL 1 (best) BASIC4.1□□□□□ -1.75
MSX1P28360 LINC01239-202ENST00000436786 2347 ntTSL 2 BASIC4.1□□□□□ -1.75
MSX1P28360 RPS6KA6-204ENST00000620340 8169 ntTSL 5 BASIC4.1□□□□□ -1.75
MSX1P28360 KCNJ16-211ENST00000615244 4190 ntAPPRIS P1 TSL 4 BASIC4.1□□□□□ -1.75
MSX1P28360 AL513302.2-201ENST00000562313 1842 ntBASIC4.1□□□□□ -1.75
MSX1P28360 TAB3-204ENST00000378932 3698 ntTSL 1 (best) BASIC4.1□□□□□ -1.75
MSX1P28360 CCNT2-201ENST00000264157 6917 ntAPPRIS P1 TSL 1 (best) BASIC4.1□□□□□ -1.75
MSX1P28360 Y_RNA.40-201ENST00000362645 93 ntBASIC4.1□□□□□ -1.75
MSX1P28360 SNORD45.3-201ENST00000363836 72 ntBASIC4.1□□□□□ -1.75
MSX1P28360 MIR3074-201ENST00000384885 81 ntBASIC4.1□□□□□ -1.75
MSX1P28360 SNORA79-201ENST00000408376 140 ntBASIC4.1□□□□□ -1.75
MSX1P28360 RNA5SP129-201ENST00000410276 118 ntBASIC4.1□□□□□ -1.75
MSX1P28360 AL691449.1-201ENST00000426570 421 ntBASIC4.1□□□□□ -1.75
MSX1P28360 AC069285.2-201ENST00000440210 275 ntBASIC4.1□□□□□ -1.75
MSX1P28360 AL158147.1-201ENST00000443970 75 ntBASIC4.1□□□□□ -1.75
MSX1P28360 snoU13.14-201ENST00000459372 104 ntBASIC4.1□□□□□ -1.75
MSX1P28360 AC117454.1-201ENST00000491120 168 ntBASIC4.1□□□□□ -1.75
MSX1P28360 LINC02276-201ENST00000508388 138 ntTSL 3 BASIC4.1□□□□□ -1.75
MSX1P28360 IGKV2D-19-201ENST00000523346 262 ntBASIC4.1□□□□□ -1.75
MSX1P28360 AC007224.1-201ENST00000564410 144 ntBASIC4.1□□□□□ -1.75
MSX1P28360 AL031274.2-201ENST00000599419 203 ntBASIC4.1□□□□□ -1.75
MSX1P28360 RNU6-91P-201ENST00000607774 107 ntBASIC4.1□□□□□ -1.75
MSX1P28360 AC068647.2-201ENST00000637380 353 ntBASIC4.1□□□□□ -1.75
MSX1P28360 SLC38A9-223ENST00000515629 2673 ntTSL 2 BASIC4.1□□□□□ -1.75
MSX1P28360 ADGRL2-208ENST00000370725 5293 ntAPPRIS ALT2 TSL 5 BASIC4.1□□□□□ -1.75
MSX1P28360 AC104662.3-202ENST00000507794 4055 ntTSL 2 BASIC4.1□□□□□ -1.75
MSX1P28360 CNOT1-201ENST00000317147 8471 ntAPPRIS P3 TSL 1 (best) BASIC4.1□□□□□ -1.75
MSX1P28360 DOCK7-219ENST00000635253 6423 ntAPPRIS ALT2 TSL 5 BASIC4.09□□□□□ -1.75
MSX1P28360 FKTN-201ENST00000223528 7364 ntAPPRIS P1 TSL 1 (best) BASIC4.09□□□□□ -1.75
MSX1P28360 SOS1-203ENST00000426016 8517 ntAPPRIS P2 TSL 2 BASIC4.09□□□□□ -1.75
MSX1P28360 F8-202ENST00000360256 9059 ntAPPRIS P1 TSL 1 (best) BASIC4.09□□□□□ -1.75
MSX1P28360 SYCP1-210ENST00000618516 3109 ntAPPRIS P1 TSL 1 (best) BASIC4.09□□□□□ -1.75
MSX1P28360 AGTR1-202ENST00000402260 2172 ntTSL 5 BASIC4.09□□□□□ -1.75
MSX1P28360 SYTL2-217ENST00000528231 3536 ntAPPRIS ALT1 TSL 1 (best) BASIC4.09□□□□□ -1.75
MSX1P28360 TCHHL1-201ENST00000368806 3603 ntAPPRIS P1 TSL 1 (best) BASIC4.09□□□□□ -1.75
MSX1P28360 RNU6-1010P-201ENST00000362757 107 ntBASIC4.09□□□□□ -1.75
MSX1P28360 ACEA_U3.1-201ENST00000363057 217 ntBASIC4.09□□□□□ -1.75
MSX1P28360 RNA5SP513-201ENST00000364648 118 ntBASIC4.09□□□□□ -1.75
MSX1P28360 Y_RNA.280-201ENST00000364765 112 ntBASIC4.09□□□□□ -1.75
MSX1P28360 MIR548B-201ENST00000385247 97 ntBASIC4.09□□□□□ -1.75
MSX1P28360 AL133475.1-201ENST00000404414 305 ntBASIC4.09□□□□□ -1.75
MSX1P28360 Y_RNA.622-201ENST00000411091 108 ntBASIC4.09□□□□□ -1.75
MSX1P28360 AL356387.2-201ENST00000422272 243 ntBASIC4.09□□□□□ -1.75
MSX1P28360 AIMP1P2-201ENST00000425294 312 ntBASIC4.09□□□□□ -1.75
MSX1P28360 AC105940.1-201ENST00000434265 353 ntTSL 3 BASIC4.09□□□□□ -1.75
MSX1P28360 HMGN2P20-201ENST00000437531 273 ntBASIC4.09□□□□□ -1.75
MSX1P28360 SNRPGP8-201ENST00000454064 226 ntBASIC4.09□□□□□ -1.75
MSX1P28360 TSPY5P-202ENST00000456541 142 ntTSL 3 BASIC4.09□□□□□ -1.75
MSX1P28360 RPS4XP2-201ENST00000458402 793 ntBASIC4.09□□□□□ -1.75
MSX1P28360 Y_RNA.694-201ENST00000516677 117 ntBASIC4.09□□□□□ -1.75
MSX1P28360 AC093331.1-201ENST00000521474 169 ntBASIC4.09□□□□□ -1.75
MSX1P28360 NDUFA5P6-201ENST00000542110 379 ntBASIC4.09□□□□□ -1.75
MSX1P28360 RPS15AP11-201ENST00000594193 385 ntBASIC4.09□□□□□ -1.75
MSX1P28360 AL670379.3-201ENST00000605040 251 ntBASIC4.09□□□□□ -1.75
MSX1P28360 AC015813.4-201ENST00000610469 179 ntBASIC4.09□□□□□ -1.75
MSX1P28360 AC073308.1-201ENST00000623696 305 ntBASIC4.09□□□□□ -1.75
MSX1P28360 VEPH1-203ENST00000392833 3979 ntTSL 1 (best) BASIC4.09□□□□□ -1.75
MSX1P28360 LYST-201ENST00000389793 13480 ntAPPRIS P1 TSL 5 BASIC4.09□□□□□ -1.75
MSX1P28360 PTPN22-202ENST00000420377 2726 ntAPPRIS ALT2 TSL 1 (best) BASIC4.09□□□□□ -1.75
MSX1P28360 PCDH15-211ENST00000395440 3177 ntTSL 5 BASIC4.09□□□□□ -1.76
MSX1P28360 OR8D1-202ENST00000641015 8286 ntAPPRIS P1 BASIC4.09□□□□□ -1.76
MSX1P28360 OR8D1-203ENST00000641897 8285 ntAPPRIS P1 BASIC4.09□□□□□ -1.76
MSX1P28360 IQGAP2-204ENST00000502745 3404 ntTSL 2 BASIC4.09□□□□□ -1.76
MSX1P28360 AKT3-201ENST00000263826 7081 ntAPPRIS P1 TSL 1 (best) BASIC4.09□□□□□ -1.76
MSX1P28360 CNOT4-202ENST00000356162 2594 ntTSL 5 BASIC4.08□□□□□ -1.76
MSX1P28360 PIK3CB-214ENST00000544716 3181 ntTSL 1 (best) BASIC4.08□□□□□ -1.76
MSX1P28360 ABCA8-215ENST00000615593 3264 ntTSL 5 BASIC4.08□□□□□ -1.76
MSX1P28360 PTPN22-201ENST00000359785 3654 ntAPPRIS P2 TSL 1 (best) BASIC4.08□□□□□ -1.76
MSX1P28360 CACNB4-257ENST00000637547 7658 ntTSL 5 BASIC4.08□□□□□ -1.76
MSX1P28360 UGT2A3-201ENST00000251566 2965 ntAPPRIS P1 TSL 1 (best) BASIC4.08□□□□□ -1.76
MSX1P28360 SNORD114-7-201ENST00000362520 77 ntBASIC4.08□□□□□ -1.76
MSX1P28360 SNORA70C-201ENST00000384538 135 ntBASIC4.08□□□□□ -1.76
MSX1P28360 RNU6-748P-201ENST00000384648 107 ntBASIC4.08□□□□□ -1.76
MSX1P28360 RNU6-19P-201ENST00000384718 107 ntBASIC4.08□□□□□ -1.76
MSX1P28360 MIR23B-201ENST00000384832 97 ntBASIC4.08□□□□□ -1.76
MSX1P28360 MIR3065-201ENST00000390137 79 ntBASIC4.08□□□□□ -1.76
MSX1P28360 SNORA48.7-201ENST00000391302 135 ntBASIC4.08□□□□□ -1.76
MSX1P28360 MARCH7-203ENST00000409591 2147 ntTSL 2 BASIC4.08□□□□□ -1.76
MSX1P28360 AC004870.4-201ENST00000424359 360 ntTSL 2 BASIC4.08□□□□□ -1.76
MSX1P28360 RN7SL303P-201ENST00000469773 251 ntBASIC4.08□□□□□ -1.76
MSX1P28360 RN7SL812P-201ENST00000493791 279 ntBASIC4.08□□□□□ -1.76
MSX1P28360 AC145146.1-201ENST00000496370 254 ntBASIC4.08□□□□□ -1.76
MSX1P28360 SNORD33.1-201ENST00000516213 88 ntBASIC4.08□□□□□ -1.76
MSX1P28360 LINC00944-201ENST00000536517 421 ntTSL 2 BASIC4.08□□□□□ -1.76
MSX1P28360 MLH3-212ENST00000556740 4491 ntAPPRIS P1 TSL 1 (best) BASIC4.08□□□□□ -1.76
MSX1P28360 IGHV4OR15-8-201ENST00000557788 353 ntAPPRIS P1 BASIC4.08□□□□□ -1.76
Retrieved 100 of 98,524 protein–RNA pairs in 166.2 ms