Protein–RNA interactions for Protein: P06340

HLA-DOA, HLA class II histocompatibility antigen, DO alpha chain, humanhuman

Predictions only

Length 250 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DOAP06340 LINC02501-201ENST00000510420 426 ntTSL 2 BASIC3.31□□□□□ -1.88
HLA-DOAP06340 AC109927.1-202ENST00000511951 282 ntTSL 3 BASIC3.31□□□□□ -1.88
HLA-DOAP06340 AC007619.1-201ENST00000544086 412 ntTSL 5 BASIC3.31□□□□□ -1.88
HLA-DOAP06340 AC003687.1-201ENST00000578040 427 ntTSL 3 BASIC3.31□□□□□ -1.88
HLA-DOAP06340 MIR3128-201ENST00000581957 66 ntBASIC3.31□□□□□ -1.88
HLA-DOAP06340 HSPE1P7-201ENST00000604681 321 ntBASIC3.31□□□□□ -1.88
HLA-DOAP06340 ABCC9-206ENST00000621589 450 ntTSL 5 BASIC3.31□□□□□ -1.88
HLA-DOAP06340 CCDC30-212ENST00000507855 2445 ntAPPRIS ALT2 TSL 1 (best) BASIC3.31□□□□□ -1.88
HLA-DOAP06340 RGS22-214ENST00000523287 4033 ntAPPRIS ALT2 TSL 2 BASIC3.31□□□□□ -1.88
HLA-DOAP06340 CEP85L-202ENST00000368488 7118 ntTSL 5 BASIC3.3□□□□□ -1.88
HLA-DOAP06340 RNU6-770P-201ENST00000363929 105 ntBASIC3.3□□□□□ -1.88
HLA-DOAP06340 Y_RNA.288-201ENST00000364854 92 ntBASIC3.3□□□□□ -1.88
HLA-DOAP06340 Y_RNA.358-201ENST00000365491 99 ntBASIC3.3□□□□□ -1.88
HLA-DOAP06340 MIR518D-201ENST00000385014 87 ntBASIC3.3□□□□□ -1.88
HLA-DOAP06340 MIR628-201ENST00000385229 95 ntBASIC3.3□□□□□ -1.88
HLA-DOAP06340 SAR1AP2-201ENST00000392696 594 ntBASIC3.3□□□□□ -1.88
HLA-DOAP06340 DEFB130A-201ENST00000400079 240 ntAPPRIS P1 TSL 1 (best) BASIC3.3□□□□□ -1.88
HLA-DOAP06340 RNA5SP21-201ENST00000410917 96 ntBASIC3.3□□□□□ -1.88
HLA-DOAP06340 AL160162.1-202ENST00000417654 244 ntTSL 3 BASIC3.3□□□□□ -1.88
HLA-DOAP06340 AL159169.1-201ENST00000421119 127 ntBASIC3.3□□□□□ -1.88
HLA-DOAP06340 DEFB130B-201ENST00000437818 240 ntAPPRIS P1 TSL 1 (best) BASIC3.3□□□□□ -1.88
HLA-DOAP06340 AL445490.2-201ENST00000440492 441 ntTSL 3 BASIC3.3□□□□□ -1.88
HLA-DOAP06340 AL392046.1-203ENST00000450106 651 ntTSL 2 BASIC3.3□□□□□ -1.88
HLA-DOAP06340 AC010974.1-201ENST00000450509 374 ntTSL 3 BASIC3.3□□□□□ -1.88
HLA-DOAP06340 AL354824.2-201ENST00000458004 446 ntTSL 3 BASIC3.3□□□□□ -1.88
HLA-DOAP06340 LINC01399-202ENST00000458450 244 ntBASIC3.3□□□□□ -1.88
HLA-DOAP06340 RNU7-170P-201ENST00000459303 61 ntBASIC3.3□□□□□ -1.88
HLA-DOAP06340 RPL23AP14-201ENST00000468281 468 ntBASIC3.3□□□□□ -1.88
HLA-DOAP06340 AC091874.1-201ENST00000511402 339 ntBASIC3.3□□□□□ -1.88
HLA-DOAP06340 LINC00933-203ENST00000559812 219 ntBASIC3.3□□□□□ -1.88
HLA-DOAP06340 AC126323.6-201ENST00000561701 451 ntTSL 3 BASIC3.3□□□□□ -1.88
HLA-DOAP06340 AC073410.2-201ENST00000603240 332 ntBASIC3.3□□□□□ -1.88
HLA-DOAP06340 AC008962.1-201ENST00000605729 304 ntBASIC3.3□□□□□ -1.88
HLA-DOAP06340 AC011373.1-201ENST00000607270 237 ntBASIC3.3□□□□□ -1.88
HLA-DOAP06340 LTN1-201ENST00000361371 7685 ntAPPRIS P1 TSL 1 (best) BASIC3.3□□□□□ -1.88
HLA-DOAP06340 RAPGEF6-202ENST00000308008 4176 ntTSL 1 (best) BASIC3.3□□□□□ -1.88
HLA-DOAP06340 GNAI3-201ENST00000369851 27174 ntAPPRIS P1 TSL 1 (best) BASIC3.3□□□□□ -1.88
HLA-DOAP06340 ANP32E-209ENST00000616917 2989 ntTSL 2 BASIC3.3□□□□□ -1.88
HLA-DOAP06340 RNU6-859P-201ENST00000362728 107 ntBASIC3.29□□□□□ -1.88
HLA-DOAP06340 Y_RNA.60-201ENST00000362831 98 ntBASIC3.29□□□□□ -1.88
HLA-DOAP06340 RNU6-227P-201ENST00000362865 103 ntBASIC3.29□□□□□ -1.88
HLA-DOAP06340 RNU6-1035P-201ENST00000384477 107 ntBASIC3.29□□□□□ -1.88
HLA-DOAP06340 MIR196B-201ENST00000384852 84 ntBASIC3.29□□□□□ -1.88
HLA-DOAP06340 TRAJ7-201ENST00000390530 59 ntAPPRIS P1 BASIC3.29□□□□□ -1.88
HLA-DOAP06340 RPS29P13-201ENST00000402041 169 ntBASIC3.29□□□□□ -1.88
HLA-DOAP06340 FBXO11-201ENST00000402508 3844 ntAPPRIS P1 TSL 1 (best) BASIC3.29□□□□□ -1.88
HLA-DOAP06340 MIR1302-6-201ENST00000408466 90 ntBASIC3.29□□□□□ -1.88
HLA-DOAP06340 RNA5SP293-201ENST00000410527 113 ntBASIC3.29□□□□□ -1.88
HLA-DOAP06340 HMGN2P30-201ENST00000423237 256 ntBASIC3.29□□□□□ -1.88
HLA-DOAP06340 Z98949.2-201ENST00000440996 144 ntBASIC3.29□□□□□ -1.88
HLA-DOAP06340 RPEP5-201ENST00000441137 268 ntBASIC3.29□□□□□ -1.88
HLA-DOAP06340 FCF1P4-201ENST00000448326 183 ntBASIC3.29□□□□□ -1.88
HLA-DOAP06340 RNU7-87P-201ENST00000459343 62 ntBASIC3.29□□□□□ -1.88
HLA-DOAP06340 TOMM22P6-201ENST00000465035 409 ntBASIC3.29□□□□□ -1.88
HLA-DOAP06340 RPL30P10-201ENST00000488148 337 ntBASIC3.29□□□□□ -1.88
HLA-DOAP06340 AC010265.1-201ENST00000513509 211 ntBASIC3.29□□□□□ -1.88
HLA-DOAP06340 RNU2-53P-201ENST00000516257 147 ntBASIC3.29□□□□□ -1.88
HLA-DOAP06340 SNORA31.18-201ENST00000517043 134 ntBASIC3.29□□□□□ -1.88
HLA-DOAP06340 AC109479.2-201ENST00000517842 174 ntBASIC3.29□□□□□ -1.88
HLA-DOAP06340 AL590705.4-201ENST00000532209 134 ntBASIC3.29□□□□□ -1.88
HLA-DOAP06340 AL390123.1-201ENST00000603216 237 ntBASIC3.29□□□□□ -1.88
HLA-DOAP06340 DLEU2_2.2-201ENST00000615474 90 ntBASIC3.29□□□□□ -1.88
HLA-DOAP06340 AL138825.1-201ENST00000618587 192 ntBASIC3.29□□□□□ -1.88
HLA-DOAP06340 TEX9-207ENST00000560582 2005 ntTSL 3 BASIC3.29□□□□□ -1.88
HLA-DOAP06340 LINC00907-209ENST00000593234 3376 ntTSL 1 (best) BASIC3.29□□□□□ -1.88
HLA-DOAP06340 OLFM3-206ENST00000536598 2801 ntTSL 5 BASIC3.29□□□□□ -1.88
HLA-DOAP06340 NR5A2-201ENST00000236914 3115 ntTSL 1 (best) BASIC3.28□□□□□ -1.88
HLA-DOAP06340 JMJD1C-210ENST00000542921 8149 ntAPPRIS ALT2 TSL 1 (best) BASIC3.28□□□□□ -1.88
HLA-DOAP06340 RFESD-202ENST00000380005 2587 ntTSL 2 BASIC3.28□□□□□ -1.88
HLA-DOAP06340 MGAT4C-211ENST00000621808 2582 ntAPPRIS P1 TSL 1 (best) BASIC3.28□□□□□ -1.88
HLA-DOAP06340 SYT14-208ENST00000637265 13567 ntTSL 5 BASIC3.28□□□□□ -1.88
HLA-DOAP06340 TOPORSLP1-203ENST00000493279 2871 ntTSL 4 BASIC3.28□□□□□ -1.88
HLA-DOAP06340 CUL3-204ENST00000409777 3147 ntTSL 1 (best) BASIC3.28□□□□□ -1.88
HLA-DOAP06340 RNU6-942P-201ENST00000363002 107 ntBASIC3.28□□□□□ -1.88
HLA-DOAP06340 RNU6-105P-201ENST00000363909 104 ntBASIC3.28□□□□□ -1.88
HLA-DOAP06340 RNU4-50P-201ENST00000364361 141 ntBASIC3.28□□□□□ -1.88
HLA-DOAP06340 RNU1-112P-201ENST00000364401 164 ntBASIC3.28□□□□□ -1.88
HLA-DOAP06340 MIR215-201ENST00000384858 110 ntBASIC3.28□□□□□ -1.88
HLA-DOAP06340 SNORA12.2-201ENST00000391040 156 ntBASIC3.28□□□□□ -1.88
HLA-DOAP06340 MIR190B-201ENST00000401119 79 ntBASIC3.28□□□□□ -1.88
HLA-DOAP06340 RNU2-52P-201ENST00000410680 190 ntBASIC3.28□□□□□ -1.88
HLA-DOAP06340 LINC00393-201ENST00000443621 282 ntTSL 3 BASIC3.28□□□□□ -1.88
HLA-DOAP06340 snoU13.28-201ENST00000459235 104 ntBASIC3.28□□□□□ -1.88
HLA-DOAP06340 CPHL1P-203ENST00000471823 523 ntTSL 5 BASIC3.28□□□□□ -1.88
HLA-DOAP06340 SNORA43.2-201ENST00000516652 128 ntBASIC3.28□□□□□ -1.88
HLA-DOAP06340 SNORA40.15-201ENST00000516884 107 ntBASIC3.28□□□□□ -1.88
HLA-DOAP06340 SNORA31.21-201ENST00000517180 77 ntBASIC3.28□□□□□ -1.88
HLA-DOAP06340 AP005436.2-201ENST00000528458 252 ntTSL 5 BASIC3.28□□□□□ -1.88
HLA-DOAP06340 AC010928.2-201ENST00000588017 287 ntBASIC3.28□□□□□ -1.88
HLA-DOAP06340 ZNF861P-201ENST00000588126 639 ntBASIC3.28□□□□□ -1.88
HLA-DOAP06340 AC060766.3-201ENST00000591442 263 ntBASIC3.28□□□□□ -1.88
HLA-DOAP06340 RPS29P30-201ENST00000600975 111 ntBASIC3.28□□□□□ -1.88
HLA-DOAP06340 AC096772.1-201ENST00000609146 564 ntBASIC3.28□□□□□ -1.88
HLA-DOAP06340 MUCL1-205ENST00000619042 243 ntAPPRIS ALT2 TSL 5 BASIC3.28□□□□□ -1.88
HLA-DOAP06340 AC241585.2-209ENST00000638217 143 ntBASIC3.28□□□□□ -1.88
HLA-DOAP06340 AC092593.1-201ENST00000515413 1815 ntBASIC3.28□□□□□ -1.88
HLA-DOAP06340 CUL1P1-201ENST00000509510 2425 ntBASIC3.28□□□□□ -1.89
HLA-DOAP06340 AC090740.1-201ENST00000623193 2262 ntBASIC3.27□□□□□ -1.89
HLA-DOAP06340 MIR449A-201ENST00000362113 91 ntBASIC3.27□□□□□ -1.89
HLA-DOAP06340 Y_RNA.257-201ENST00000364596 102 ntBASIC3.27□□□□□ -1.89
Retrieved 100 of 98,524 protein–RNA pairs in 109.1 ms