Protein–RNA interactions for Protein: O75056

SDC3, Syndecan-3, humanhuman

Predictions only

Length 442 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3O75056 AL442638.1-201ENST00000443359 237 ntTSL 5 BASIC1.94□□□□□ -2.1
SDC3O75056 RNU6-717P-201ENST00000459076 104 ntBASIC1.94□□□□□ -2.1
SDC3O75056 RNU6-333P-201ENST00000459117 107 ntBASIC1.94□□□□□ -2.1
SDC3O75056 AC087884.1-201ENST00000469738 328 ntBASIC1.94□□□□□ -2.1
SDC3O75056 MAGI1-AS1-201ENST00000472514 591 ntTSL 3 BASIC1.94□□□□□ -2.1
SDC3O75056 BMPR1B-AS1-201ENST00000510795 511 ntTSL 3 BASIC1.94□□□□□ -2.1
SDC3O75056 SNORA14.1-201ENST00000516113 141 ntBASIC1.94□□□□□ -2.1
SDC3O75056 CENPUP1-201ENST00000526649 1202 ntBASIC1.94□□□□□ -2.1
SDC3O75056 AP000763.2-201ENST00000540641 163 ntBASIC1.94□□□□□ -2.1
SDC3O75056 SNRPGP17-201ENST00000603780 214 ntBASIC1.94□□□□□ -2.1
SDC3O75056 AC009314.1-201ENST00000603871 304 ntBASIC1.94□□□□□ -2.1
SDC3O75056 AL356157.2-201ENST00000605122 111 ntBASIC1.94□□□□□ -2.1
SDC3O75056 AC103705.1-201ENST00000619013 241 ntBASIC1.94□□□□□ -2.1
SDC3O75056 KNL1-204ENST00000527044 5404 ntTSL 5 BASIC1.94□□□□□ -2.1
SDC3O75056 ZNF702P-202ENST00000434269 1966 ntBASIC1.93□□□□□ -2.1
SDC3O75056 RNU6-428P-201ENST00000362942 107 ntBASIC1.93□□□□□ -2.1
SDC3O75056 RNU6-546P-201ENST00000383991 107 ntBASIC1.93□□□□□ -2.1
SDC3O75056 RNA5SP219-201ENST00000390940 113 ntBASIC1.93□□□□□ -2.1
SDC3O75056 RNU6-293P-201ENST00000411259 106 ntBASIC1.93□□□□□ -2.1
SDC3O75056 AL356379.1-201ENST00000414105 126 ntBASIC1.93□□□□□ -2.1
SDC3O75056 MTCO3P41-201ENST00000414801 328 ntBASIC1.93□□□□□ -2.1
SDC3O75056 AC016907.1-201ENST00000419483 435 ntBASIC1.93□□□□□ -2.1
SDC3O75056 MTND3P21-201ENST00000433774 331 ntBASIC1.93□□□□□ -2.1
SDC3O75056 AL365258.1-201ENST00000440885 247 ntTSL 3 BASIC1.93□□□□□ -2.1
SDC3O75056 AC004888.1-201ENST00000450480 547 ntTSL 2 BASIC1.93□□□□□ -2.1
SDC3O75056 MCHR2-AS1-203ENST00000451220 429 ntTSL 3 BASIC1.93□□□□□ -2.1
SDC3O75056 AL353752.1-201ENST00000454946 260 ntBASIC1.93□□□□□ -2.1
SDC3O75056 PMCHL2-203ENST00000457791 237 ntBASIC1.93□□□□□ -2.1
SDC3O75056 RNU7-138P-201ENST00000459479 64 ntBASIC1.93□□□□□ -2.1
SDC3O75056 AC009646.1-201ENST00000510455 318 ntBASIC1.93□□□□□ -2.1
SDC3O75056 LIAS-206ENST00000513731 826 ntTSL 5 BASIC1.93□□□□□ -2.1
SDC3O75056 RNA5SP401-201ENST00000515920 127 ntBASIC1.93□□□□□ -2.1
SDC3O75056 AC018630.3-201ENST00000542637 96 ntBASIC1.93□□□□□ -2.1
SDC3O75056 VN1R80P-201ENST00000597126 338 ntBASIC1.93□□□□□ -2.1
SDC3O75056 MALAT1-207ENST00000613376 132 ntTSL 3 BASIC1.93□□□□□ -2.1
SDC3O75056 AL162373.1-201ENST00000620433 407 ntBASIC1.93□□□□□ -2.1
SDC3O75056 AP000560.1-201ENST00000624150 1937 ntBASIC1.93□□□□□ -2.1
SDC3O75056 XRCC4-205ENST00000511817 1636 ntAPPRIS P4 TSL 1 (best) BASIC1.92□□□□□ -2.1
SDC3O75056 snoU2_19.1-201ENST00000362361 80 ntBASIC1.92□□□□□ -2.1
SDC3O75056 RNU6-1141P-201ENST00000364520 107 ntBASIC1.92□□□□□ -2.1
SDC3O75056 RNU4-75P-201ENST00000364621 146 ntBASIC1.92□□□□□ -2.1
SDC3O75056 Y_RNA.338-201ENST00000365320 114 ntBASIC1.92□□□□□ -2.1
SDC3O75056 TRDJ2-201ENST00000390475 54 ntAPPRIS P1 BASIC1.92□□□□□ -2.1
SDC3O75056 SNORA40.19-201ENST00000390846 128 ntBASIC1.92□□□□□ -2.1
SDC3O75056 RNU2-20P-201ENST00000410425 191 ntBASIC1.92□□□□□ -2.1
SDC3O75056 POLHP1-201ENST00000411806 470 ntBASIC1.92□□□□□ -2.1
SDC3O75056 AL136369.2-201ENST00000420825 537 ntTSL 3 BASIC1.92□□□□□ -2.1
SDC3O75056 LINC01707-201ENST00000425517 627 ntTSL 3 BASIC1.92□□□□□ -2.1
SDC3O75056 SMG7-AS1-202ENST00000432837 466 ntTSL 3 BASIC1.92□□□□□ -2.1
SDC3O75056 SNAP23P1-201ENST00000433229 246 ntBASIC1.92□□□□□ -2.1
SDC3O75056 AL121601.2-201ENST00000438019 707 ntBASIC1.92□□□□□ -2.1
SDC3O75056 TPTE2P5-203ENST00000458118 728 ntBASIC1.92□□□□□ -2.1
SDC3O75056 AC022447.4-201ENST00000504053 364 ntBASIC1.92□□□□□ -2.1
SDC3O75056 RNU6-189P-201ENST00000516120 101 ntBASIC1.92□□□□□ -2.1
SDC3O75056 RNA5SP364-201ENST00000516938 78 ntBASIC1.92□□□□□ -2.1
SDC3O75056 AC099554.1-201ENST00000520032 572 ntTSL 3 BASIC1.92□□□□□ -2.1
SDC3O75056 AC090124.2-201ENST00000527727 563 ntTSL 4 BASIC1.92□□□□□ -2.1
SDC3O75056 AC022596.1-201ENST00000582895 302 ntTSL 5 BASIC1.92□□□□□ -2.1
SDC3O75056 RNU6-85P-201ENST00000605989 107 ntBASIC1.92□□□□□ -2.1
SDC3O75056 SDR42E1P4-201ENST00000620894 481 ntBASIC1.92□□□□□ -2.1
SDC3O75056 HAS2-201ENST00000303924 4190 ntAPPRIS P1 TSL 1 (best) BASIC1.92□□□□□ -2.1
SDC3O75056 SCN7A-206ENST00000619410 7186 ntAPPRIS P1 TSL 5 BASIC1.92□□□□□ -2.1
SDC3O75056 SCN7A-207ENST00000621965 7186 ntAPPRIS P1 TSL 5 BASIC1.92□□□□□ -2.1
SDC3O75056 MDM2-206ENST00000350057 1401 ntTSL 1 (best) BASIC1.91□□□□□ -2.1
SDC3O75056 CEP57L1-223ENST00000523787 2522 ntAPPRIS ALT2 TSL 5 BASIC1.91□□□□□ -2.1
SDC3O75056 RNU6-827P-201ENST00000365553 106 ntBASIC1.91□□□□□ -2.1
SDC3O75056 RNU4-20P-201ENST00000365601 151 ntBASIC1.91□□□□□ -2.1
SDC3O75056 TSACC-205ENST00000368255 751 ntAPPRIS P1 TSL 1 (best) BASIC1.91□□□□□ -2.1
SDC3O75056 RNU6-692P-201ENST00000384496 107 ntBASIC1.91□□□□□ -2.1
SDC3O75056 Y_RNA.517-201ENST00000384551 106 ntBASIC1.91□□□□□ -2.1
SDC3O75056 MIR518A2-201ENST00000384966 87 ntBASIC1.91□□□□□ -2.1
SDC3O75056 MIR514A2-201ENST00000385131 88 ntBASIC1.91□□□□□ -2.1
SDC3O75056 MIR514A3-201ENST00000385132 88 ntBASIC1.91□□□□□ -2.1
SDC3O75056 SNORD37.1-201ENST00000390968 65 ntBASIC1.91□□□□□ -2.1
SDC3O75056 RNA5SP338-201ENST00000410495 85 ntBASIC1.91□□□□□ -2.1
SDC3O75056 RNU2-48P-201ENST00000410694 191 ntBASIC1.91□□□□□ -2.1
SDC3O75056 AC009411.1-202ENST00000412424 548 ntTSL 4 BASIC1.91□□□□□ -2.1
SDC3O75056 AC073626.1-201ENST00000415146 582 ntTSL 4 BASIC1.91□□□□□ -2.1
SDC3O75056 ARL5AP1-201ENST00000418991 388 ntBASIC1.91□□□□□ -2.1
SDC3O75056 DLGAP5P1-201ENST00000430307 464 ntBASIC1.91□□□□□ -2.1
SDC3O75056 AL122017.1-201ENST00000435858 784 ntTSL 2 BASIC1.91□□□□□ -2.1
SDC3O75056 LINC02264-201ENST00000442020 576 ntTSL 3 BASIC1.91□□□□□ -2.1
SDC3O75056 AL354949.1-201ENST00000446438 170 ntTSL 2 BASIC1.91□□□□□ -2.1
SDC3O75056 MTCO2P7-201ENST00000446518 666 ntBASIC1.91□□□□□ -2.1
SDC3O75056 AL031274.1-201ENST00000450334 232 ntBASIC1.91□□□□□ -2.1
SDC3O75056 Y_RNA.654-201ENST00000497848 106 ntBASIC1.91□□□□□ -2.1
SDC3O75056 SMAD1-AS2-201ENST00000508936 1090 ntTSL 1 (best) BASIC1.91□□□□□ -2.1
SDC3O75056 RNU5F-2P-201ENST00000516066 82 ntBASIC1.91□□□□□ -2.1
SDC3O75056 RNU1-40P-201ENST00000516816 164 ntBASIC1.91□□□□□ -2.1
SDC3O75056 RNU1-97P-201ENST00000516872 164 ntBASIC1.91□□□□□ -2.1
SDC3O75056 AL512360.1-201ENST00000555346 234 ntBASIC1.91□□□□□ -2.1
SDC3O75056 AL118558.2-201ENST00000556294 238 ntBASIC1.91□□□□□ -2.1
SDC3O75056 HMGB1P33-201ENST00000563485 527 ntBASIC1.91□□□□□ -2.1
SDC3O75056 MIR5089-201ENST00000580047 84 ntBASIC1.91□□□□□ -2.1
SDC3O75056 MIR5002-201ENST00000584713 97 ntBASIC1.91□□□□□ -2.1
SDC3O75056 AC018889.1-201ENST00000605372 397 ntBASIC1.91□□□□□ -2.1
SDC3O75056 AC092954.2-201ENST00000609103 430 ntBASIC1.91□□□□□ -2.1
SDC3O75056 AC015540.1-201ENST00000615828 501 ntBASIC1.91□□□□□ -2.1
SDC3O75056 uc_338.20-201ENST00000621563 178 ntBASIC1.91□□□□□ -2.1
SDC3O75056 AC069228.1-201ENST00000546936 1615 ntTSL 3 BASIC1.91□□□□□ -2.1
Retrieved 100 of 98,524 protein–RNA pairs in 170.2 ms