Protein–RNA interactions for Protein: Q9Y5H4

PCDHGA1, Protocadherin gamma-A1, humanhuman

Predictions only

Length 931 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA1Q9Y5H4 RPS29P13-201ENST00000402041 169 ntBASIC2.22□□□□□ -2.05
PCDHGA1Q9Y5H4 CTNNA2-204ENST00000409266 432 ntTSL 3 BASIC2.22□□□□□ -2.05
PCDHGA1Q9Y5H4 MTND1P23-201ENST00000416931 372 ntBASIC2.22□□□□□ -2.05
PCDHGA1Q9Y5H4 ARL5AP1-201ENST00000418991 388 ntBASIC2.22□□□□□ -2.05
PCDHGA1Q9Y5H4 AC243964.1-201ENST00000441814 261 ntBASIC2.22□□□□□ -2.05
PCDHGA1Q9Y5H4 AC092567.1-201ENST00000452397 251 ntTSL 3 BASIC2.22□□□□□ -2.05
PCDHGA1Q9Y5H4 AC055731.1-201ENST00000474387 401 ntBASIC2.22□□□□□ -2.05
PCDHGA1Q9Y5H4 RPL30P12-201ENST00000474666 353 ntBASIC2.22□□□□□ -2.05
PCDHGA1Q9Y5H4 RPS27P21-201ENST00000486977 252 ntBASIC2.22□□□□□ -2.05
PCDHGA1Q9Y5H4 HYDIN2-201ENST00000493714 554 ntTSL 4 BASIC2.22□□□□□ -2.05
PCDHGA1Q9Y5H4 RPL38P4-201ENST00000502376 214 ntBASIC2.22□□□□□ -2.05
PCDHGA1Q9Y5H4 AP000889.2-201ENST00000532684 490 ntBASIC2.22□□□□□ -2.05
PCDHGA1Q9Y5H4 AC068205.1-204ENST00000532989 481 ntTSL 3 BASIC2.22□□□□□ -2.05
PCDHGA1Q9Y5H4 CASC1-205ENST00000545133 2146 ntAPPRIS ALT2 TSL 2 BASIC2.22□□□□□ -2.05
PCDHGA1Q9Y5H4 PRELID2P1-201ENST00000552837 301 ntBASIC2.22□□□□□ -2.05
PCDHGA1Q9Y5H4 ZNF519P2-201ENST00000557032 169 ntBASIC2.22□□□□□ -2.05
PCDHGA1Q9Y5H4 AC005909.1-201ENST00000577835 755 ntTSL 3 BASIC2.22□□□□□ -2.05
PCDHGA1Q9Y5H4 AC007229.1-201ENST00000590455 412 ntBASIC2.22□□□□□ -2.05
PCDHGA1Q9Y5H4 ELOCP5-201ENST00000604924 333 ntBASIC2.22□□□□□ -2.05
PCDHGA1Q9Y5H4 AC012557.2-201ENST00000605919 418 ntBASIC2.22□□□□□ -2.05
PCDHGA1Q9Y5H4 RNU6-85P-201ENST00000605989 107 ntBASIC2.22□□□□□ -2.05
PCDHGA1Q9Y5H4 AC097372.5-201ENST00000623665 376 ntBASIC2.22□□□□□ -2.05
PCDHGA1Q9Y5H4 FER-210ENST00000628534 558 ntTSL 5 BASIC2.22□□□□□ -2.05
PCDHGA1Q9Y5H4 ANKAR-201ENST00000313581 4391 ntAPPRIS P1 TSL 1 (best) BASIC2.21□□□□□ -2.05
PCDHGA1Q9Y5H4 RNA5SP99-201ENST00000364020 114 ntBASIC2.21□□□□□ -2.06
PCDHGA1Q9Y5H4 RNU6-336P-201ENST00000364891 107 ntBASIC2.21□□□□□ -2.06
PCDHGA1Q9Y5H4 RNU6-1222P-201ENST00000384615 107 ntBASIC2.21□□□□□ -2.06
PCDHGA1Q9Y5H4 MIR544A-201ENST00000384855 91 ntBASIC2.21□□□□□ -2.06
PCDHGA1Q9Y5H4 AL590556.1-201ENST00000423231 483 ntBASIC2.21□□□□□ -2.06
PCDHGA1Q9Y5H4 AL122017.1-201ENST00000435858 784 ntTSL 2 BASIC2.21□□□□□ -2.06
PCDHGA1Q9Y5H4 RPL39P29-201ENST00000447779 157 ntBASIC2.21□□□□□ -2.06
PCDHGA1Q9Y5H4 RNU7-138P-201ENST00000459479 64 ntBASIC2.21□□□□□ -2.06
PCDHGA1Q9Y5H4 PLCH1-AS2-201ENST00000472913 408 ntTSL 2 BASIC2.21□□□□□ -2.06
PCDHGA1Q9Y5H4 AC107032.1-201ENST00000485945 480 ntBASIC2.21□□□□□ -2.06
PCDHGA1Q9Y5H4 RPL30P1-201ENST00000488676 339 ntBASIC2.21□□□□□ -2.06
PCDHGA1Q9Y5H4 Y_RNA.654-201ENST00000497848 106 ntBASIC2.21□□□□□ -2.06
PCDHGA1Q9Y5H4 RNU6-1069P-201ENST00000516612 133 ntBASIC2.21□□□□□ -2.06
PCDHGA1Q9Y5H4 RNU2-19P-201ENST00000517288 84 ntBASIC2.21□□□□□ -2.06
PCDHGA1Q9Y5H4 AC145141.2-201ENST00000518473 501 ntTSL 3 BASIC2.21□□□□□ -2.06
PCDHGA1Q9Y5H4 AC139497.1-201ENST00000524042 501 ntTSL 5 BASIC2.21□□□□□ -2.06
PCDHGA1Q9Y5H4 AC093249.1-201ENST00000567049 203 ntBASIC2.21□□□□□ -2.06
PCDHGA1Q9Y5H4 BNIP3P16-201ENST00000589779 534 ntBASIC2.21□□□□□ -2.06
PCDHGA1Q9Y5H4 AC092747.3-201ENST00000603769 301 ntBASIC2.21□□□□□ -2.06
PCDHGA1Q9Y5H4 RNU6-89P-201ENST00000606519 100 ntBASIC2.21□□□□□ -2.06
PCDHGA1Q9Y5H4 DISC2.1-201ENST00000612827 205 ntBASIC2.21□□□□□ -2.06
PCDHGA1Q9Y5H4 AC109471.3-201ENST00000625219 233 ntTSL 5 BASIC2.21□□□□□ -2.06
PCDHGA1Q9Y5H4 RNU6-212P-201ENST00000362642 104 ntBASIC2.2□□□□□ -2.06
PCDHGA1Q9Y5H4 Y_RNA.167-201ENST00000363735 109 ntBASIC2.2□□□□□ -2.06
PCDHGA1Q9Y5H4 Y_RNA.231-201ENST00000364358 102 ntBASIC2.2□□□□□ -2.06
PCDHGA1Q9Y5H4 Y_RNA.516-201ENST00000384541 124 ntBASIC2.2□□□□□ -2.06
PCDHGA1Q9Y5H4 Y_RNA.554-201ENST00000384672 102 ntBASIC2.2□□□□□ -2.06
PCDHGA1Q9Y5H4 RNU6ATAC15P-201ENST00000408279 121 ntBASIC2.2□□□□□ -2.06
PCDHGA1Q9Y5H4 RNU6-293P-201ENST00000411259 106 ntBASIC2.2□□□□□ -2.06
PCDHGA1Q9Y5H4 USP9YP27-201ENST00000418455 438 ntBASIC2.2□□□□□ -2.06
PCDHGA1Q9Y5H4 MTCO1P20-201ENST00000425366 358 ntBASIC2.2□□□□□ -2.06
PCDHGA1Q9Y5H4 LINC01650-201ENST00000438093 602 ntTSL 2 BASIC2.2□□□□□ -2.06
PCDHGA1Q9Y5H4 MTND1P34-201ENST00000438556 671 ntBASIC2.2□□□□□ -2.06
PCDHGA1Q9Y5H4 LINC02264-201ENST00000442020 576 ntTSL 3 BASIC2.2□□□□□ -2.06
PCDHGA1Q9Y5H4 AL031274.1-201ENST00000450334 232 ntBASIC2.2□□□□□ -2.06
PCDHGA1Q9Y5H4 LINC01691-201ENST00000450546 426 ntTSL 5 BASIC2.2□□□□□ -2.06
PCDHGA1Q9Y5H4 HMGN2P23-201ENST00000456759 269 ntBASIC2.2□□□□□ -2.06
PCDHGA1Q9Y5H4 RNU6-1208P-201ENST00000459588 107 ntBASIC2.2□□□□□ -2.06
PCDHGA1Q9Y5H4 AC107208.1-201ENST00000508265 519 ntTSL 4 BASIC2.2□□□□□ -2.06
PCDHGA1Q9Y5H4 AC004492.1-201ENST00000607036 742 ntBASIC2.2□□□□□ -2.06
PCDHGA1Q9Y5H4 AC092807.2-201ENST00000609367 243 ntBASIC2.2□□□□□ -2.06
PCDHGA1Q9Y5H4 U4.5-201ENST00000617137 123 ntBASIC2.2□□□□□ -2.06
PCDHGA1Q9Y5H4 AC090517.3-201ENST00000625170 141 ntBASIC2.2□□□□□ -2.06
PCDHGA1Q9Y5H4 NEDD4-205ENST00000506154 6751 ntTSL 1 (best) BASIC2.2□□□□□ -2.06
PCDHGA1Q9Y5H4 MIER3-202ENST00000381199 5188 ntAPPRIS ALT1 TSL 1 (best) BASIC2.2□□□□□ -2.06
PCDHGA1Q9Y5H4 OR4G1P-203ENST00000641984 1631 ntBASIC2.2□□□□□ -2.06
PCDHGA1Q9Y5H4 CALCRL-201ENST00000392370 5155 ntAPPRIS P1 TSL 1 (best) BASIC2.2□□□□□ -2.06
PCDHGA1Q9Y5H4 COMMD6-201ENST00000355801 486 ntTSL 2 BASIC2.19□□□□□ -2.06
PCDHGA1Q9Y5H4 Y_RNA.9-201ENST00000362354 101 ntBASIC2.19□□□□□ -2.06
PCDHGA1Q9Y5H4 Y_RNA.38-201ENST00000362617 102 ntBASIC2.19□□□□□ -2.06
PCDHGA1Q9Y5H4 RNU6-1159P-201ENST00000362933 107 ntBASIC2.19□□□□□ -2.06
PCDHGA1Q9Y5H4 RNU6-827P-201ENST00000365553 106 ntBASIC2.19□□□□□ -2.06
PCDHGA1Q9Y5H4 RNU6-546P-201ENST00000383991 107 ntBASIC2.19□□□□□ -2.06
PCDHGA1Q9Y5H4 RNU6-611P-201ENST00000384276 104 ntBASIC2.19□□□□□ -2.06
PCDHGA1Q9Y5H4 RNU6-1215P-201ENST00000384441 102 ntBASIC2.19□□□□□ -2.06
PCDHGA1Q9Y5H4 U3.40-201ENST00000408706 208 ntBASIC2.19□□□□□ -2.06
PCDHGA1Q9Y5H4 AC009411.1-202ENST00000412424 548 ntTSL 4 BASIC2.19□□□□□ -2.06
PCDHGA1Q9Y5H4 TTTY16-201ENST00000437686 192 ntTSL 1 (best) BASIC2.19□□□□□ -2.06
PCDHGA1Q9Y5H4 AC005154.1-208ENST00000440438 353 ntTSL 5 BASIC2.19□□□□□ -2.06
PCDHGA1Q9Y5H4 USP9YP8-201ENST00000441913 500 ntBASIC2.19□□□□□ -2.06
PCDHGA1Q9Y5H4 AL137159.1-201ENST00000452808 512 ntBASIC2.19□□□□□ -2.06
PCDHGA1Q9Y5H4 AL160162.1-201ENST00000456715 442 ntTSL 3 BASIC2.19□□□□□ -2.06
PCDHGA1Q9Y5H4 AL136987.2-201ENST00000457321 684 ntTSL 3 BASIC2.19□□□□□ -2.06
PCDHGA1Q9Y5H4 AC022272.1-201ENST00000503478 777 ntTSL 2 BASIC2.19□□□□□ -2.06
PCDHGA1Q9Y5H4 AC116337.1-201ENST00000509680 687 ntBASIC2.19□□□□□ -2.06
PCDHGA1Q9Y5H4 AC078814.3-201ENST00000553036 491 ntBASIC2.19□□□□□ -2.06
PCDHGA1Q9Y5H4 AC103996.1-201ENST00000555468 102 ntBASIC2.19□□□□□ -2.06
PCDHGA1Q9Y5H4 AC091135.1-201ENST00000585943 307 ntBASIC2.19□□□□□ -2.06
PCDHGA1Q9Y5H4 AL031274.2-201ENST00000599419 203 ntBASIC2.19□□□□□ -2.06
PCDHGA1Q9Y5H4 SDR42E1P4-201ENST00000620894 481 ntBASIC2.19□□□□□ -2.06
PCDHGA1Q9Y5H4 DLX6-AS1_1.1-201ENST00000621599 180 ntBASIC2.19□□□□□ -2.06
PCDHGA1Q9Y5H4 AC121333.1-201ENST00000567488 2709 ntBASIC2.19□□□□□ -2.06
PCDHGA1Q9Y5H4 LINC01938-201ENST00000521341 1864 ntTSL 2 BASIC2.19□□□□□ -2.06
PCDHGA1Q9Y5H4 AC011124.2-201ENST00000518739 3222 ntTSL 1 (best) BASIC2.18□□□□□ -2.06
PCDHGA1Q9Y5H4 CFHR4-202ENST00000367416 2178 ntAPPRIS P1 TSL 2 BASIC2.18□□□□□ -2.06
PCDHGA1Q9Y5H4 RNU6-1285P-201ENST00000363480 105 ntBASIC2.18□□□□□ -2.06
Retrieved 100 of 98,524 protein–RNA pairs in 117.9 ms