Protein–RNA interactions for Protein: Q9BQ90

KLHDC3, Kelch domain-containing protein 3, humanhuman

Predictions only

Length 382 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KLHDC3Q9BQ90 C16orf97-206ENST00000622950 415 ntTSL 2 BASIC1.73□□□□□ -2.13
KLHDC3Q9BQ90 ZNF644-212ENST00000621077 2056 ntTSL 5 BASIC1.73□□□□□ -2.13
KLHDC3Q9BQ90 XRCC4-205ENST00000511817 1636 ntAPPRIS P4 TSL 1 (best) BASIC1.73□□□□□ -2.13
KLHDC3Q9BQ90 OXR1-209ENST00000517566 4501 ntTSL 1 (best) BASIC1.72□□□□□ -2.13
KLHDC3Q9BQ90 AP000560.1-201ENST00000624150 1937 ntBASIC1.72□□□□□ -2.13
KLHDC3Q9BQ90 SLITRK6-201ENST00000400286 4318 ntAPPRIS P1 TSL 1 (best) BASIC1.72□□□□□ -2.13
KLHDC3Q9BQ90 RNU6-82P-201ENST00000363970 107 ntBASIC1.72□□□□□ -2.13
KLHDC3Q9BQ90 RNU6-1141P-201ENST00000364520 107 ntBASIC1.72□□□□□ -2.13
KLHDC3Q9BQ90 TSACC-205ENST00000368255 751 ntAPPRIS P1 TSL 1 (best) BASIC1.72□□□□□ -2.13
KLHDC3Q9BQ90 TRDJ2-201ENST00000390475 54 ntAPPRIS P1 BASIC1.72□□□□□ -2.13
KLHDC3Q9BQ90 SNORA40.19-201ENST00000390846 128 ntBASIC1.72□□□□□ -2.13
KLHDC3Q9BQ90 RNU6ATAC38P-201ENST00000408119 126 ntBASIC1.72□□□□□ -2.13
KLHDC3Q9BQ90 AC008440.2-201ENST00000413496 423 ntTSL 5 BASIC1.72□□□□□ -2.13
KLHDC3Q9BQ90 EIF1AXP1-201ENST00000419267 435 ntBASIC1.72□□□□□ -2.13
KLHDC3Q9BQ90 AL590556.1-201ENST00000423231 483 ntBASIC1.72□□□□□ -2.13
KLHDC3Q9BQ90 AF124730.1-201ENST00000430001 327 ntTSL 2 BASIC1.72□□□□□ -2.13
KLHDC3Q9BQ90 USP9YP14-201ENST00000430663 563 ntBASIC1.72□□□□□ -2.13
KLHDC3Q9BQ90 DNAJC19P4-201ENST00000440115 345 ntBASIC1.72□□□□□ -2.13
KLHDC3Q9BQ90 AC018816.1-203ENST00000441894 338 ntTSL 3 BASIC1.72□□□□□ -2.13
KLHDC3Q9BQ90 AL442638.1-201ENST00000443359 237 ntTSL 5 BASIC1.72□□□□□ -2.13
KLHDC3Q9BQ90 AC025428.1-201ENST00000444137 403 ntTSL 3 BASIC1.72□□□□□ -2.13
KLHDC3Q9BQ90 AL354949.1-201ENST00000446438 170 ntTSL 2 BASIC1.72□□□□□ -2.13
KLHDC3Q9BQ90 LINC01203-202ENST00000456091 476 ntTSL 3 BASIC1.72□□□□□ -2.13
KLHDC3Q9BQ90 AC074124.1-201ENST00000502368 375 ntTSL 3 BASIC1.72□□□□□ -2.13
KLHDC3Q9BQ90 HMGB3P17-201ENST00000504195 649 ntBASIC1.72□□□□□ -2.13
KLHDC3Q9BQ90 AC097467.1-201ENST00000513660 370 ntTSL 5 BASIC1.72□□□□□ -2.13
KLHDC3Q9BQ90 RNU5F-2P-201ENST00000516066 82 ntBASIC1.72□□□□□ -2.13
KLHDC3Q9BQ90 AC022616.8-201ENST00000533569 253 ntBASIC1.72□□□□□ -2.13
KLHDC3Q9BQ90 AC027018.1-202ENST00000534723 383 ntTSL 3 BASIC1.72□□□□□ -2.13
KLHDC3Q9BQ90 AK6P1-201ENST00000540219 478 ntBASIC1.72□□□□□ -2.13
KLHDC3Q9BQ90 ANP32BP3-201ENST00000559213 706 ntBASIC1.72□□□□□ -2.13
KLHDC3Q9BQ90 AC103987.3-201ENST00000582071 292 ntBASIC1.72□□□□□ -2.13
KLHDC3Q9BQ90 AC107304.1-201ENST00000604229 296 ntBASIC1.72□□□□□ -2.13
KLHDC3Q9BQ90 AC012493.3-201ENST00000604494 112 ntBASIC1.72□□□□□ -2.13
KLHDC3Q9BQ90 AL356157.2-201ENST00000605122 111 ntBASIC1.72□□□□□ -2.13
KLHDC3Q9BQ90 AC018889.1-201ENST00000605372 397 ntBASIC1.72□□□□□ -2.13
KLHDC3Q9BQ90 AC104073.3-201ENST00000610942 955 ntBASIC1.72□□□□□ -2.13
KLHDC3Q9BQ90 AL158209.2-201ENST00000619266 216 ntBASIC1.72□□□□□ -2.13
KLHDC3Q9BQ90 MIR6863-201ENST00000636112 90 ntBASIC1.72□□□□□ -2.13
KLHDC3Q9BQ90 AC011124.2-201ENST00000518739 3222 ntTSL 1 (best) BASIC1.72□□□□□ -2.13
KLHDC3Q9BQ90 SLC9C2-201ENST00000367714 4428 ntAPPRIS P1 TSL 1 (best) BASIC1.72□□□□□ -2.13
KLHDC3Q9BQ90 RNU6-944P-201ENST00000364023 107 ntBASIC1.71□□□□□ -2.14
KLHDC3Q9BQ90 RNU6-611P-201ENST00000384276 104 ntBASIC1.71□□□□□ -2.14
KLHDC3Q9BQ90 RNU6-43P-201ENST00000384302 107 ntBASIC1.71□□□□□ -2.14
KLHDC3Q9BQ90 RNU6-692P-201ENST00000384496 107 ntBASIC1.71□□□□□ -2.14
KLHDC3Q9BQ90 MIR9-3-201ENST00000385084 90 ntBASIC1.71□□□□□ -2.14
KLHDC3Q9BQ90 RNA5SP219-201ENST00000390940 113 ntBASIC1.71□□□□□ -2.14
KLHDC3Q9BQ90 SNORD37.1-201ENST00000390968 65 ntBASIC1.71□□□□□ -2.14
KLHDC3Q9BQ90 HMGN2P39-201ENST00000398005 273 ntBASIC1.71□□□□□ -2.14
KLHDC3Q9BQ90 RNU2-48P-201ENST00000410694 191 ntBASIC1.71□□□□□ -2.14
KLHDC3Q9BQ90 SNAP23P1-201ENST00000433229 246 ntBASIC1.71□□□□□ -2.14
KLHDC3Q9BQ90 AL136369.1-201ENST00000437825 244 ntTSL 5 BASIC1.71□□□□□ -2.14
KLHDC3Q9BQ90 RPL7P54-201ENST00000438336 674 ntBASIC1.71□□□□□ -2.14
KLHDC3Q9BQ90 AL137159.1-201ENST00000452808 512 ntBASIC1.71□□□□□ -2.14
KLHDC3Q9BQ90 RNU7-138P-201ENST00000459479 64 ntBASIC1.71□□□□□ -2.14
KLHDC3Q9BQ90 MAGI1-AS1-201ENST00000472514 591 ntTSL 3 BASIC1.71□□□□□ -2.14
KLHDC3Q9BQ90 AK3P2-201ENST00000507976 429 ntBASIC1.71□□□□□ -2.14
KLHDC3Q9BQ90 MTND3P5-201ENST00000512798 333 ntBASIC1.71□□□□□ -2.14
KLHDC3Q9BQ90 AC107953.1-201ENST00000522216 297 ntBASIC1.71□□□□□ -2.14
KLHDC3Q9BQ90 OR11H5P-201ENST00000554039 926 ntBASIC1.71□□□□□ -2.14
KLHDC3Q9BQ90 AC009558.1-201ENST00000561174 581 ntTSL 4 BASIC1.71□□□□□ -2.14
KLHDC3Q9BQ90 AC007495.2-202ENST00000564102 535 ntTSL 4 BASIC1.71□□□□□ -2.14
KLHDC3Q9BQ90 MIR3136-201ENST00000583498 78 ntBASIC1.71□□□□□ -2.14
KLHDC3Q9BQ90 AP005057.1-201ENST00000583827 574 ntTSL 4 BASIC1.71□□□□□ -2.14
KLHDC3Q9BQ90 RNU6-85P-201ENST00000605989 107 ntBASIC1.71□□□□□ -2.14
KLHDC3Q9BQ90 DCAF17-212ENST00000611110 975 ntTSL 1 (best) BASIC1.71□□□□□ -2.14
KLHDC3Q9BQ90 AC022202.1-201ENST00000613515 211 ntBASIC1.71□□□□□ -2.14
KLHDC3Q9BQ90 LINC02033-202ENST00000623312 492 ntTSL 3 BASIC1.71□□□□□ -2.14
KLHDC3Q9BQ90 OR5AK4P-201ENST00000635912 903 ntBASIC1.71□□□□□ -2.14
KLHDC3Q9BQ90 AC241585.2-209ENST00000638217 143 ntBASIC1.71□□□□□ -2.14
KLHDC3Q9BQ90 OR5M1-202ENST00000641076 4302 ntAPPRIS P1 BASIC1.71□□□□□ -2.14
KLHDC3Q9BQ90 DYNC2H1-203ENST00000398093 12945 ntAPPRIS P3 TSL 5 BASIC1.7□□□□□ -2.14
KLHDC3Q9BQ90 AL356292.1-201ENST00000283110 373 ntBASIC1.7□□□□□ -2.14
KLHDC3Q9BQ90 LINC00305-201ENST00000323355 873 ntTSL 1 (best) BASIC1.7□□□□□ -2.14
KLHDC3Q9BQ90 RNU6-1159P-201ENST00000362933 107 ntBASIC1.7□□□□□ -2.14
KLHDC3Q9BQ90 RNU6-827P-201ENST00000365553 106 ntBASIC1.7□□□□□ -2.14
KLHDC3Q9BQ90 Y_RNA.559-201ENST00000384686 107 ntBASIC1.7□□□□□ -2.14
KLHDC3Q9BQ90 TRAJ11-201ENST00000390526 60 ntAPPRIS P1 BASIC1.7□□□□□ -2.14
KLHDC3Q9BQ90 AC009411.1-202ENST00000412424 548 ntTSL 4 BASIC1.7□□□□□ -2.14
KLHDC3Q9BQ90 TIMM9P3-201ENST00000428659 274 ntBASIC1.7□□□□□ -2.14
KLHDC3Q9BQ90 CBX3P6-201ENST00000430257 527 ntBASIC1.7□□□□□ -2.14
KLHDC3Q9BQ90 HMGN2P3-201ENST00000433603 273 ntBASIC1.7□□□□□ -2.14
KLHDC3Q9BQ90 HMGN2P5-201ENST00000436882 273 ntBASIC1.7□□□□□ -2.14
KLHDC3Q9BQ90 AL121601.2-201ENST00000438019 707 ntBASIC1.7□□□□□ -2.14
KLHDC3Q9BQ90 TRAPPC2P3-201ENST00000443200 321 ntBASIC1.7□□□□□ -2.14
KLHDC3Q9BQ90 AC010095.1-201ENST00000443543 144 ntBASIC1.7□□□□□ -2.14
KLHDC3Q9BQ90 LINC02540-201ENST00000455554 570 ntTSL 3 BASIC1.7□□□□□ -2.14
KLHDC3Q9BQ90 SRRM1P2-201ENST00000464531 1192 ntBASIC1.7□□□□□ -2.14
KLHDC3Q9BQ90 AC087884.1-201ENST00000469738 328 ntBASIC1.7□□□□□ -2.14
KLHDC3Q9BQ90 PLS1-AS1-201ENST00000485338 346 ntTSL 3 BASIC1.7□□□□□ -2.14
KLHDC3Q9BQ90 LINC01487-202ENST00000490497 423 ntTSL 3 BASIC1.7□□□□□ -2.14
KLHDC3Q9BQ90 HMGB1P35-201ENST00000503360 598 ntBASIC1.7□□□□□ -2.14
KLHDC3Q9BQ90 SMAD1-AS2-201ENST00000508936 1090 ntTSL 1 (best) BASIC1.7□□□□□ -2.14
KLHDC3Q9BQ90 RNA5SP401-201ENST00000515920 127 ntBASIC1.7□□□□□ -2.14
KLHDC3Q9BQ90 SNORA14.1-201ENST00000516113 141 ntBASIC1.7□□□□□ -2.14
KLHDC3Q9BQ90 RNU6-189P-201ENST00000516120 101 ntBASIC1.7□□□□□ -2.14
KLHDC3Q9BQ90 HSPE1P18-201ENST00000517602 280 ntBASIC1.7□□□□□ -2.14
KLHDC3Q9BQ90 AC099554.1-201ENST00000520032 572 ntTSL 3 BASIC1.7□□□□□ -2.14
KLHDC3Q9BQ90 CENPUP1-201ENST00000526649 1202 ntBASIC1.7□□□□□ -2.14
KLHDC3Q9BQ90 VN1R80P-201ENST00000597126 338 ntBASIC1.7□□□□□ -2.14
Retrieved 100 of 98,524 protein–RNA pairs in 123 ms