Protein–RNA interactions for Protein: Q8NDQ6

ZNF540, Zinc finger protein 540, humanhuman

Predictions only

Length 660 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540Q8NDQ6 RNU6-237P-201ENST00000515985 71 ntBASIC1.91□□□□□ -2.1
ZNF540Q8NDQ6 RNU6-835P-201ENST00000516974 104 ntBASIC1.91□□□□□ -2.1
ZNF540Q8NDQ6 RNU6-410P-201ENST00000517006 107 ntBASIC1.91□□□□□ -2.1
ZNF540Q8NDQ6 AC090124.2-201ENST00000527727 563 ntTSL 4 BASIC1.91□□□□□ -2.1
ZNF540Q8NDQ6 ANP32BP3-201ENST00000559213 706 ntBASIC1.91□□□□□ -2.1
ZNF540Q8NDQ6 MIR4775-201ENST00000581168 75 ntBASIC1.91□□□□□ -2.1
ZNF540Q8NDQ6 AC098848.2-201ENST00000588023 330 ntBASIC1.91□□□□□ -2.1
ZNF540Q8NDQ6 AC008752.3-201ENST00000588113 712 ntBASIC1.91□□□□□ -2.1
ZNF540Q8NDQ6 AC068944.2-201ENST00000610373 403 ntBASIC1.91□□□□□ -2.1
ZNF540Q8NDQ6 SKIL-202ENST00000413427 2702 ntTSL 1 (best) BASIC1.91□□□□□ -2.1
ZNF540Q8NDQ6 ATF1-201ENST00000262053 2181 ntAPPRIS P1 TSL 1 (best) BASIC1.91□□□□□ -2.1
ZNF540Q8NDQ6 SNORD56.1-201ENST00000362913 68 ntBASIC1.9□□□□□ -2.11
ZNF540Q8NDQ6 RNU6-1283P-201ENST00000365314 105 ntBASIC1.9□□□□□ -2.11
ZNF540Q8NDQ6 MIR181A1-201ENST00000385026 110 ntBASIC1.9□□□□□ -2.11
ZNF540Q8NDQ6 KRTAP25-1-201ENST00000416044 370 ntAPPRIS P1 BASIC1.9□□□□□ -2.11
ZNF540Q8NDQ6 LINC01707-201ENST00000425517 627 ntTSL 3 BASIC1.9□□□□□ -2.11
ZNF540Q8NDQ6 FGF7P6-202ENST00000451282 293 ntBASIC1.9□□□□□ -2.11
ZNF540Q8NDQ6 LINC02540-201ENST00000455554 570 ntTSL 3 BASIC1.9□□□□□ -2.11
ZNF540Q8NDQ6 AL162395.1-201ENST00000457882 422 ntBASIC1.9□□□□□ -2.11
ZNF540Q8NDQ6 AL354824.2-201ENST00000458004 446 ntTSL 3 BASIC1.9□□□□□ -2.11
ZNF540Q8NDQ6 CPHL1P-203ENST00000471823 523 ntTSL 5 BASIC1.9□□□□□ -2.11
ZNF540Q8NDQ6 RPS29P25-201ENST00000481709 171 ntBASIC1.9□□□□□ -2.11
ZNF540Q8NDQ6 RN7SL274P-201ENST00000492268 272 ntBASIC1.9□□□□□ -2.11
ZNF540Q8NDQ6 SNORA40.12-201ENST00000516329 111 ntBASIC1.9□□□□□ -2.11
ZNF540Q8NDQ6 Y_RNA.693-201ENST00000516641 110 ntBASIC1.9□□□□□ -2.11
ZNF540Q8NDQ6 Y_RNA.704-201ENST00000516851 102 ntBASIC1.9□□□□□ -2.11
ZNF540Q8NDQ6 AP003469.3-201ENST00000518090 473 ntTSL 3 BASIC1.9□□□□□ -2.11
ZNF540Q8NDQ6 MTND4LP26-201ENST00000518144 282 ntBASIC1.9□□□□□ -2.11
ZNF540Q8NDQ6 BNIP3P6-201ENST00000549284 499 ntBASIC1.9□□□□□ -2.11
ZNF540Q8NDQ6 HMGB1P33-201ENST00000563485 527 ntBASIC1.9□□□□□ -2.11
ZNF540Q8NDQ6 DEFB122-202ENST00000569013 197 ntBASIC1.9□□□□□ -2.11
ZNF540Q8NDQ6 MIR4524B-201ENST00000581569 115 ntBASIC1.9□□□□□ -2.11
ZNF540Q8NDQ6 CERS6-AS1-202ENST00000594898 499 ntTSL 5 BASIC1.9□□□□□ -2.11
ZNF540Q8NDQ6 AC012493.3-201ENST00000604494 112 ntBASIC1.9□□□□□ -2.11
ZNF540Q8NDQ6 AC092794.1-201ENST00000612734 582 ntBASIC1.9□□□□□ -2.11
ZNF540Q8NDQ6 DAOA-AS1_2.1-201ENST00000614829 187 ntBASIC1.9□□□□□ -2.11
ZNF540Q8NDQ6 U4.5-201ENST00000617137 123 ntBASIC1.9□□□□□ -2.11
ZNF540Q8NDQ6 AC011155.2-201ENST00000623202 216 ntBASIC1.9□□□□□ -2.11
ZNF540Q8NDQ6 AC139792.3-201ENST00000623525 224 ntBASIC1.9□□□□□ -2.11
ZNF540Q8NDQ6 CGGBP1-202ENST00000398392 5298 ntAPPRIS P1 BASIC1.9□□□□□ -2.11
ZNF540Q8NDQ6 AC027514.1-201ENST00000588561 1603 ntBASIC1.9□□□□□ -2.11
ZNF540Q8NDQ6 ZBBX-205ENST00000455345 3185 ntAPPRIS ALT2 TSL 1 (best) BASIC1.89□□□□□ -2.11
ZNF540Q8NDQ6 Y_RNA.40-201ENST00000362645 93 ntBASIC1.89□□□□□ -2.11
ZNF540Q8NDQ6 DEFB125-201ENST00000382410 587 ntAPPRIS P1 TSL 1 (best) BASIC1.89□□□□□ -2.11
ZNF540Q8NDQ6 Y_RNA.450-201ENST00000384198 113 ntBASIC1.89□□□□□ -2.11
ZNF540Q8NDQ6 MIR578-201ENST00000384828 96 ntBASIC1.89□□□□□ -2.11
ZNF540Q8NDQ6 MIR454-201ENST00000390180 115 ntBASIC1.89□□□□□ -2.11
ZNF540Q8NDQ6 TRAV40-201ENST00000390467 317 ntAPPRIS P1 BASIC1.89□□□□□ -2.11
ZNF540Q8NDQ6 SUMO2P12-201ENST00000405924 140 ntBASIC1.89□□□□□ -2.11
ZNF540Q8NDQ6 RNU6-908P-201ENST00000410160 94 ntBASIC1.89□□□□□ -2.11
ZNF540Q8NDQ6 FCF1P9-201ENST00000412546 282 ntBASIC1.89□□□□□ -2.11
ZNF540Q8NDQ6 SNORD56-201ENST00000413522 71 ntBASIC1.89□□□□□ -2.11
ZNF540Q8NDQ6 AC009310.1-201ENST00000414414 451 ntBASIC1.89□□□□□ -2.11
ZNF540Q8NDQ6 AL606489.2-201ENST00000433886 234 ntBASIC1.89□□□□□ -2.11
ZNF540Q8NDQ6 AC079781.2-201ENST00000446424 169 ntBASIC1.89□□□□□ -2.11
ZNF540Q8NDQ6 MTND1P18-201ENST00000448191 573 ntBASIC1.89□□□□□ -2.11
ZNF540Q8NDQ6 AC004888.1-201ENST00000450480 547 ntTSL 2 BASIC1.89□□□□□ -2.11
ZNF540Q8NDQ6 LINC00571-203ENST00000454060 525 ntTSL 3 BASIC1.89□□□□□ -2.11
ZNF540Q8NDQ6 AC079943.1-201ENST00000491909 466 ntTSL 3 BASIC1.89□□□□□ -2.11
ZNF540Q8NDQ6 AC022272.1-201ENST00000503478 777 ntTSL 2 BASIC1.89□□□□□ -2.11
ZNF540Q8NDQ6 AC116562.3-201ENST00000506136 177 ntBASIC1.89□□□□□ -2.11
ZNF540Q8NDQ6 RBBP4P6-201ENST00000508098 202 ntBASIC1.89□□□□□ -2.11
ZNF540Q8NDQ6 RNU6-685P-201ENST00000517088 95 ntBASIC1.89□□□□□ -2.11
ZNF540Q8NDQ6 AC025871.1-202ENST00000518819 432 ntTSL 3 BASIC1.89□□□□□ -2.11
ZNF540Q8NDQ6 AP005660.1-201ENST00000522972 293 ntBASIC1.89□□□□□ -2.11
ZNF540Q8NDQ6 AC068587.5-201ENST00000528506 175 ntBASIC1.89□□□□□ -2.11
ZNF540Q8NDQ6 AP003034.1-201ENST00000534621 422 ntBASIC1.89□□□□□ -2.11
ZNF540Q8NDQ6 CPSF6-207ENST00000551516 234 ntTSL 2 BASIC1.89□□□□□ -2.11
ZNF540Q8NDQ6 AC007495.2-202ENST00000564102 535 ntTSL 4 BASIC1.89□□□□□ -2.11
ZNF540Q8NDQ6 MTATP6P3-201ENST00000581686 676 ntBASIC1.89□□□□□ -2.11
ZNF540Q8NDQ6 AC091135.1-201ENST00000585943 307 ntBASIC1.89□□□□□ -2.11
ZNF540Q8NDQ6 AC008521.1-201ENST00000587471 187 ntBASIC1.89□□□□□ -2.11
ZNF540Q8NDQ6 Z84480.1-201ENST00000605131 311 ntBASIC1.89□□□□□ -2.11
ZNF540Q8NDQ6 DSCR8-208ENST00000614538 403 ntAPPRIS P5 TSL 5 BASIC1.89□□□□□ -2.11
ZNF540Q8NDQ6 HOTAIRM1_5.1-201ENST00000619311 145 ntBASIC1.89□□□□□ -2.11
ZNF540Q8NDQ6 AL159153.1-201ENST00000619688 317 ntBASIC1.89□□□□□ -2.11
ZNF540Q8NDQ6 AC005609.4-201ENST00000625071 447 ntBASIC1.89□□□□□ -2.11
ZNF540Q8NDQ6 AC068631.1-221ENST00000626006 592 ntTSL 5 BASIC1.89□□□□□ -2.11
ZNF540Q8NDQ6 hsa-mir-3158-1.1-201ENST00000637571 81 ntBASIC1.89□□□□□ -2.11
ZNF540Q8NDQ6 AP3S1-209ENST00000640413 489 ntTSL 5 BASIC1.89□□□□□ -2.11
ZNF540Q8NDQ6 CFHR4-202ENST00000367416 2178 ntAPPRIS P1 TSL 2 BASIC1.89□□□□□ -2.11
ZNF540Q8NDQ6 AL161668.1-201ENST00000320322 358 ntTSL 1 (best) BASIC1.88□□□□□ -2.11
ZNF540Q8NDQ6 SNORD114-1-201ENST00000362705 72 ntBASIC1.88□□□□□ -2.11
ZNF540Q8NDQ6 RNU6-1120P-201ENST00000362988 108 ntBASIC1.88□□□□□ -2.11
ZNF540Q8NDQ6 RNU6-944P-201ENST00000364023 107 ntBASIC1.88□□□□□ -2.11
ZNF540Q8NDQ6 SNORA62.1-201ENST00000364287 154 ntBASIC1.88□□□□□ -2.11
ZNF540Q8NDQ6 RNU6-384P-201ENST00000364900 104 ntBASIC1.88□□□□□ -2.11
ZNF540Q8NDQ6 SNORD115-7-201ENST00000365306 82 ntBASIC1.88□□□□□ -2.11
ZNF540Q8NDQ6 RNU4-48P-201ENST00000365559 182 ntBASIC1.88□□□□□ -2.11
ZNF540Q8NDQ6 RNU6-483P-201ENST00000384088 108 ntBASIC1.88□□□□□ -2.11
ZNF540Q8NDQ6 MIR934-201ENST00000401241 83 ntBASIC1.88□□□□□ -2.11
ZNF540Q8NDQ6 RNU6-648P-201ENST00000410190 107 ntBASIC1.88□□□□□ -2.11
ZNF540Q8NDQ6 RNU4-26P-201ENST00000410270 107 ntBASIC1.88□□□□□ -2.11
ZNF540Q8NDQ6 AC003985.1-201ENST00000414127 362 ntTSL 3 BASIC1.88□□□□□ -2.11
ZNF540Q8NDQ6 AL356134.1-201ENST00000419815 373 ntTSL 3 BASIC1.88□□□□□ -2.11
ZNF540Q8NDQ6 AL591043.1-201ENST00000432461 424 ntBASIC1.88□□□□□ -2.11
ZNF540Q8NDQ6 RBMX2P4-201ENST00000441256 376 ntBASIC1.88□□□□□ -2.11
ZNF540Q8NDQ6 USP9YP8-201ENST00000441913 500 ntBASIC1.88□□□□□ -2.11
ZNF540Q8NDQ6 AC073415.1-201ENST00000449240 153 ntBASIC1.88□□□□□ -2.11
ZNF540Q8NDQ6 AL356010.1-201ENST00000456364 102 ntBASIC1.88□□□□□ -2.11
Retrieved 100 of 98,524 protein–RNA pairs in 123.6 ms