Protein–RNA interactions for Protein: P78367

NKX3-2, Homeobox protein Nkx-3.2, humanhuman

Predictions only

Length 333 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-2P78367 LINC00933-203ENST00000559812 219 ntBASIC3.66□□□□□ -1.82
NKX3-2P78367 AC007598.2-201ENST00000569490 539 ntTSL 3 BASIC3.66□□□□□ -1.82
NKX3-2P78367 MIR2682-201ENST00000580305 110 ntBASIC3.66□□□□□ -1.82
NKX3-2P78367 OR4C16-201ENST00000623907 933 ntAPPRIS P1 BASIC3.66□□□□□ -1.82
NKX3-2P78367 NBEAL1-203ENST00000449802 10938 ntAPPRIS P1 TSL 5 BASIC3.66□□□□□ -1.82
NKX3-2P78367 OXR1-206ENST00000449762 2621 ntTSL 1 (best) BASIC3.66□□□□□ -1.82
NKX3-2P78367 SCEL-202ENST00000377246 3081 ntAPPRIS ALT2 TSL 1 (best) BASIC3.66□□□□□ -1.82
NKX3-2P78367 AC017071.1-201ENST00000564407 2204 ntBASIC3.66□□□□□ -1.82
NKX3-2P78367 KIAA1107-203ENST00000637221 4337 ntTSL 1 (best) BASIC3.65□□□□□ -1.82
NKX3-2P78367 Y_RNA.274-201ENST00000364714 101 ntBASIC3.65□□□□□ -1.83
NKX3-2P78367 Y_RNA.352-201ENST00000365439 102 ntBASIC3.65□□□□□ -1.83
NKX3-2P78367 RNU6-968P-201ENST00000384076 107 ntBASIC3.65□□□□□ -1.83
NKX3-2P78367 RNU6-217P-201ENST00000384164 104 ntBASIC3.65□□□□□ -1.83
NKX3-2P78367 Y_RNA.602-201ENST00000410535 92 ntBASIC3.65□□□□□ -1.83
NKX3-2P78367 AC017074.1-201ENST00000424612 561 ntTSL 3 BASIC3.65□□□□□ -1.83
NKX3-2P78367 NDUFB4P6-201ENST00000436819 366 ntBASIC3.65□□□□□ -1.83
NKX3-2P78367 AC243964.1-201ENST00000441814 261 ntBASIC3.65□□□□□ -1.83
NKX3-2P78367 RPS26P21-201ENST00000475397 348 ntBASIC3.65□□□□□ -1.83
NKX3-2P78367 SNORA31.6-201ENST00000516241 130 ntBASIC3.65□□□□□ -1.83
NKX3-2P78367 RNU5B-3P-201ENST00000516601 115 ntBASIC3.65□□□□□ -1.83
NKX3-2P78367 SCARNA24.2-201ENST00000516968 130 ntBASIC3.65□□□□□ -1.83
NKX3-2P78367 AP004607.1-201ENST00000524456 203 ntBASIC3.65□□□□□ -1.83
NKX3-2P78367 AP001318.2-201ENST00000533378 492 ntTSL 3 BASIC3.65□□□□□ -1.83
NKX3-2P78367 AC113146.1-202ENST00000560259 433 ntTSL 5 BASIC3.65□□□□□ -1.83
NKX3-2P78367 MIR3186-201ENST00000577404 85 ntBASIC3.65□□□□□ -1.83
NKX3-2P78367 MIR4659A-201ENST00000580269 81 ntBASIC3.65□□□□□ -1.83
NKX3-2P78367 Y_RNA.772-201ENST00000606692 102 ntBASIC3.65□□□□□ -1.83
NKX3-2P78367 AC005696.2-201ENST00000610120 626 ntTSL 3 BASIC3.65□□□□□ -1.83
NKX3-2P78367 SCARNA4-201ENST00000629045 128 ntBASIC3.65□□□□□ -1.83
NKX3-2P78367 CCDC178-213ENST00000583930 3094 ntAPPRIS ALT2 TSL 1 (best) BASIC3.65□□□□□ -1.83
NKX3-2P78367 KIAA1841-202ENST00000356719 2149 ntTSL 5 BASIC3.65□□□□□ -1.83
NKX3-2P78367 ZBTB37-201ENST00000367701 19128 ntAPPRIS P1 TSL 1 (best) BASIC3.65□□□□□ -1.83
NKX3-2P78367 C6orf10-204ENST00000447241 2148 ntAPPRIS P3 TSL 5 BASIC3.65□□□□□ -1.83
NKX3-2P78367 STEAP4-201ENST00000301959 2321 ntTSL 1 (best) BASIC3.65□□□□□ -1.83
NKX3-2P78367 MGAT4C-211ENST00000621808 2582 ntAPPRIS P1 TSL 1 (best) BASIC3.64□□□□□ -1.83
NKX3-2P78367 MUC19-205ENST00000454784 24775 ntTSL 5 BASIC3.64□□□□□ -1.83
NKX3-2P78367 ECT2-211ENST00000441497 2825 ntAPPRIS P2 TSL 1 (best) BASIC3.64□□□□□ -1.83
NKX3-2P78367 CUL3-203ENST00000409096 2701 ntTSL 1 (best) BASIC3.64□□□□□ -1.83
NKX3-2P78367 RNU1-70P-201ENST00000362618 164 ntBASIC3.64□□□□□ -1.83
NKX3-2P78367 RNU6-778P-201ENST00000363269 103 ntBASIC3.64□□□□□ -1.83
NKX3-2P78367 RNU6-17P-201ENST00000384245 107 ntBASIC3.64□□□□□ -1.83
NKX3-2P78367 Y_RNA.785-201ENST00000384290 109 ntBASIC3.64□□□□□ -1.83
NKX3-2P78367 RNU6-102P-201ENST00000384485 104 ntBASIC3.64□□□□□ -1.83
NKX3-2P78367 RNU6-18P-201ENST00000384527 107 ntBASIC3.64□□□□□ -1.83
NKX3-2P78367 SNORD58.1-201ENST00000391313 66 ntBASIC3.64□□□□□ -1.83
NKX3-2P78367 RNA5SP229-201ENST00000410809 99 ntBASIC3.64□□□□□ -1.83
NKX3-2P78367 AL591043.1-201ENST00000432461 424 ntBASIC3.64□□□□□ -1.83
NKX3-2P78367 AL353705.4-201ENST00000449661 238 ntBASIC3.64□□□□□ -1.83
NKX3-2P78367 PRELID3BP1-201ENST00000457142 540 ntBASIC3.64□□□□□ -1.83
NKX3-2P78367 RPL23AP14-201ENST00000468281 468 ntBASIC3.64□□□□□ -1.83
NKX3-2P78367 NDUFA6-201ENST00000470753 475 ntTSL 2 BASIC3.64□□□□□ -1.83
NKX3-2P78367 AF186996.7-201ENST00000492781 209 ntBASIC3.64□□□□□ -1.83
NKX3-2P78367 RNU6-182P-201ENST00000516970 105 ntBASIC3.64□□□□□ -1.83
NKX3-2P78367 RNU4ATAC17P-201ENST00000517272 120 ntBASIC3.64□□□□□ -1.83
NKX3-2P78367 SNORA81.3-201ENST00000517283 198 ntBASIC3.64□□□□□ -1.83
NKX3-2P78367 AC099793.1-201ENST00000567538 285 ntTSL 3 BASIC3.64□□□□□ -1.83
NKX3-2P78367 AL133383.1-201ENST00000569292 901 ntTSL 1 (best) BASIC3.64□□□□□ -1.83
NKX3-2P78367 AL162713.1-201ENST00000604480 262 ntBASIC3.64□□□□□ -1.83
NKX3-2P78367 RPL23AP88-201ENST00000605759 454 ntBASIC3.64□□□□□ -1.83
NKX3-2P78367 AC006386.2-201ENST00000624491 75 ntBASIC3.64□□□□□ -1.83
NKX3-2P78367 AC012005.1-201ENST00000624575 75 ntBASIC3.64□□□□□ -1.83
NKX3-2P78367 MIR622-201ENST00000638396 96 ntBASIC3.64□□□□□ -1.83
NKX3-2P78367 CPD-202ENST00000543464 4007 ntTSL 2 BASIC3.64□□□□□ -1.83
NKX3-2P78367 ZNF266-204ENST00000590306 3317 ntAPPRIS P1 TSL 1 (best) BASIC3.64□□□□□ -1.83
NKX3-2P78367 IL23R-205ENST00000637002 2208 ntTSL 1 (best) BASIC3.64□□□□□ -1.83
NKX3-2P78367 UACA-202ENST00000379983 4859 ntAPPRIS ALT2 TSL 5 BASIC3.64□□□□□ -1.83
NKX3-2P78367 PPIP5K2-217ENST00000627916 6010 ntAPPRIS ALT2 TSL 5 BASIC3.64□□□□□ -1.83
NKX3-2P78367 XRCC4-203ENST00000396027 1530 ntAPPRIS ALT1 TSL 5 BASIC3.64□□□□□ -1.83
NKX3-2P78367 XRN1-202ENST00000392981 5383 ntAPPRIS ALT1 TSL 1 (best) BASIC3.64□□□□□ -1.83
NKX3-2P78367 RNF38-210ENST00000611646 5185 ntTSL 5 BASIC3.63□□□□□ -1.83
NKX3-2P78367 PGGT1B-203ENST00000419445 9545 ntAPPRIS P1 TSL 1 (best) BASIC3.63□□□□□ -1.83
NKX3-2P78367 SNORD81.1-201ENST00000363064 77 ntBASIC3.63□□□□□ -1.83
NKX3-2P78367 SNORD113-8-201ENST00000363497 74 ntBASIC3.63□□□□□ -1.83
NKX3-2P78367 RNU6-280P-201ENST00000364145 104 ntBASIC3.63□□□□□ -1.83
NKX3-2P78367 Y_RNA.269-201ENST00000364685 89 ntBASIC3.63□□□□□ -1.83
NKX3-2P78367 RNA5-8SP4-201ENST00000365096 150 ntBASIC3.63□□□□□ -1.83
NKX3-2P78367 RNU6-1286P-201ENST00000383871 107 ntBASIC3.63□□□□□ -1.83
NKX3-2P78367 MIR32-201ENST00000384965 70 ntBASIC3.63□□□□□ -1.83
NKX3-2P78367 TRAJ17-201ENST00000390520 63 ntAPPRIS P1 BASIC3.63□□□□□ -1.83
NKX3-2P78367 TRAJ6-201ENST00000390531 62 ntAPPRIS P1 BASIC3.63□□□□□ -1.83
NKX3-2P78367 Y_RNA.581-201ENST00000391017 97 ntBASIC3.63□□□□□ -1.83
NKX3-2P78367 SNORD78.2-201ENST00000391076 69 ntBASIC3.63□□□□□ -1.83
NKX3-2P78367 VDAC1P3-201ENST00000434069 851 ntBASIC3.63□□□□□ -1.83
NKX3-2P78367 MTATP6P7-201ENST00000453315 681 ntBASIC3.63□□□□□ -1.83
NKX3-2P78367 RPL31P13-201ENST00000484151 370 ntBASIC3.63□□□□□ -1.83
NKX3-2P78367 RPL30P5-201ENST00000494923 336 ntBASIC3.63□□□□□ -1.83
NKX3-2P78367 RN7SKP40-201ENST00000517211 242 ntBASIC3.63□□□□□ -1.83
NKX3-2P78367 ZGRF1-212ENST00000612287 2176 ntTSL 1 (best) BASIC3.63□□□□□ -1.83
NKX3-2P78367 HSP90AA4P-202ENST00000506915 2228 ntBASIC3.63□□□□□ -1.83
NKX3-2P78367 ZNF415-207ENST00000595193 2479 ntTSL 1 (best) BASIC3.63□□□□□ -1.83
NKX3-2P78367 PSG1-205ENST00000595124 1692 ntTSL 2 BASIC3.62□□□□□ -1.83
NKX3-2P78367 MT-CO2-201ENST00000361739 684 ntAPPRIS P1 BASIC3.62□□□□□ -1.83
NKX3-2P78367 RNU6-1266P-201ENST00000362794 105 ntBASIC3.62□□□□□ -1.83
NKX3-2P78367 RFX3-203ENST00000381984 364 ntTSL 3 BASIC3.62□□□□□ -1.83
NKX3-2P78367 RNU1-73P-201ENST00000383971 164 ntBASIC3.62□□□□□ -1.83
NKX3-2P78367 RNU6-926P-201ENST00000384075 107 ntBASIC3.62□□□□□ -1.83
NKX3-2P78367 RNU6-318P-201ENST00000384283 103 ntBASIC3.62□□□□□ -1.83
NKX3-2P78367 RNU2-71P-201ENST00000411395 189 ntBASIC3.62□□□□□ -1.83
NKX3-2P78367 LINC02331-201ENST00000418927 602 ntTSL 5 BASIC3.62□□□□□ -1.83
NKX3-2P78367 AL353680.1-201ENST00000433788 337 ntTSL 3 BASIC3.62□□□□□ -1.83
Retrieved 100 of 98,524 protein–RNA pairs in 124.4 ms