Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 SMG1P1-206ENST00000431681 2913 ntTSL 2 BASIC4.15□□□□□ -1.75
MSX1P28360 MAP3K19-203ENST00000375845 4369 ntAPPRIS P3 TSL 1 (best) BASIC4.14□□□□□ -1.75
MSX1P28360 G2E3-201ENST00000206595 5804 ntAPPRIS P1 TSL 1 (best) BASIC4.14□□□□□ -1.75
MSX1P28360 PTPRC-201ENST00000348564 4626 ntAPPRIS ALT2 TSL 1 (best) BASIC4.14□□□□□ -1.75
MSX1P28360 CDH9-201ENST00000231021 3079 ntAPPRIS P1 TSL 1 (best) BASIC4.14□□□□□ -1.75
MSX1P28360 SLC25A46-204ENST00000504098 2345 ntTSL 5 BASIC4.14□□□□□ -1.75
MSX1P28360 RNU6-50P-201ENST00000362356 103 ntBASIC4.14□□□□□ -1.75
MSX1P28360 U3.8-201ENST00000363675 217 ntBASIC4.14□□□□□ -1.75
MSX1P28360 RNU6-1082P-201ENST00000364574 107 ntBASIC4.14□□□□□ -1.75
MSX1P28360 MIR607-201ENST00000385241 96 ntBASIC4.14□□□□□ -1.75
MSX1P28360 SNORA40.5-201ENST00000391061 128 ntBASIC4.14□□□□□ -1.75
MSX1P28360 HSPE1P12-201ENST00000412576 301 ntBASIC4.14□□□□□ -1.75
MSX1P28360 VDAC1P3-201ENST00000434069 851 ntBASIC4.14□□□□□ -1.75
MSX1P28360 LINC02534-201ENST00000446525 283 ntTSL 3 BASIC4.14□□□□□ -1.75
MSX1P28360 AC010469.1-201ENST00000463864 576 ntBASIC4.14□□□□□ -1.75
MSX1P28360 AC084357.1-201ENST00000473404 255 ntBASIC4.14□□□□□ -1.75
MSX1P28360 AC078817.1-201ENST00000492623 435 ntBASIC4.14□□□□□ -1.75
MSX1P28360 AP001781.1-201ENST00000530977 207 ntBASIC4.14□□□□□ -1.75
MSX1P28360 AC006133.1-201ENST00000617106 264 ntBASIC4.14□□□□□ -1.75
MSX1P28360 AC091905.2-201ENST00000623143 306 ntBASIC4.14□□□□□ -1.75
MSX1P28360 CPHL1P-201ENST00000461341 3407 ntBASIC4.14□□□□□ -1.75
MSX1P28360 AC015813.1-202ENST00000577267 4056 ntTSL 2 BASIC4.14□□□□□ -1.75
MSX1P28360 AC007656.2-201ENST00000624902 4547 ntBASIC4.14□□□□□ -1.75
MSX1P28360 HIPK3-204ENST00000525975 3668 ntAPPRIS P1 TSL 1 (best) BASIC4.14□□□□□ -1.75
MSX1P28360 AK9-202ENST00000355283 2499 ntTSL 1 (best) BASIC4.14□□□□□ -1.75
MSX1P28360 STON1-GTF2A1L-204ENST00000405008 3821 ntAPPRIS P1 TSL 5 BASIC4.14□□□□□ -1.75
MSX1P28360 LINC02458-201ENST00000500381 2941 ntTSL 2 BASIC4.14□□□□□ -1.75
MSX1P28360 PPP1R9A-205ENST00000424654 4058 ntTSL 5 BASIC4.14□□□□□ -1.75
MSX1P28360 LIMA1-214ENST00000552783 3612 ntAPPRIS ALT2 TSL 1 (best) BASIC4.14□□□□□ -1.75
MSX1P28360 MACC1-205ENST00000589011 2686 ntAPPRIS P1 TSL 5 BASIC4.13□□□□□ -1.75
MSX1P28360 TMPRSS11A-202ENST00000508048 3247 ntAPPRIS ALT2 TSL 1 (best) BASIC4.13□□□□□ -1.75
MSX1P28360 ARHGAP21-218ENST00000636789 4210 ntTSL 2 BASIC4.13□□□□□ -1.75
MSX1P28360 TPRG1-201ENST00000345063 5479 ntAPPRIS P1 TSL 1 (best) BASIC4.13□□□□□ -1.75
MSX1P28360 VPS13C-201ENST00000249837 13300 ntAPPRIS P3 TSL 1 (best) BASIC4.13□□□□□ -1.75
MSX1P28360 RNU6-600P-201ENST00000362524 99 ntBASIC4.13□□□□□ -1.75
MSX1P28360 RNU6-529P-201ENST00000363383 104 ntBASIC4.13□□□□□ -1.75
MSX1P28360 U8.7-201ENST00000364940 136 ntBASIC4.13□□□□□ -1.75
MSX1P28360 SNORA18.2-201ENST00000383865 132 ntBASIC4.13□□□□□ -1.75
MSX1P28360 SNORA67.2-201ENST00000384300 149 ntBASIC4.13□□□□□ -1.75
MSX1P28360 SNORA57.1-201ENST00000391227 145 ntBASIC4.13□□□□□ -1.75
MSX1P28360 RNA5SP89-201ENST00000410300 108 ntBASIC4.13□□□□□ -1.75
MSX1P28360 AC063976.4-201ENST00000421971 163 ntBASIC4.13□□□□□ -1.75
MSX1P28360 RPS12P10-201ENST00000427031 377 ntBASIC4.13□□□□□ -1.75
MSX1P28360 HSPE1P21-201ENST00000438283 308 ntBASIC4.13□□□□□ -1.75
MSX1P28360 AC012671.1-201ENST00000451912 203 ntBASIC4.13□□□□□ -1.75
MSX1P28360 RPS29P2-201ENST00000479278 136 ntBASIC4.13□□□□□ -1.75
MSX1P28360 LINC02146-201ENST00000504244 509 ntTSL 3 BASIC4.13□□□□□ -1.75
MSX1P28360 RNA5SP446-201ENST00000515955 82 ntBASIC4.13□□□□□ -1.75
MSX1P28360 Vault.1-201ENST00000516474 102 ntBASIC4.13□□□□□ -1.75
MSX1P28360 TMEM106C-220ENST00000552561 810 ntAPPRIS P1 TSL 1 (best) BASIC4.13□□□□□ -1.75
MSX1P28360 PTP4A1-204ENST00000578299 135 ntTSL 2 BASIC4.13□□□□□ -1.75
MSX1P28360 MSMB-202ENST00000582163 488 ntAPPRIS P1 TSL 1 (best) BASIC4.13□□□□□ -1.75
MSX1P28360 AD001527.1-201ENST00000604228 379 ntTSL 5 BASIC4.13□□□□□ -1.75
MSX1P28360 KIAA1524-208ENST00000625495 147 ntTSL 5 BASIC4.13□□□□□ -1.75
MSX1P28360 PPP1R9A-202ENST00000340694 9689 ntAPPRIS P1 TSL 5 BASIC4.13□□□□□ -1.75
MSX1P28360 ARHGAP28-202ENST00000314319 5415 ntAPPRIS P2 TSL 5 BASIC4.12□□□□□ -1.75
MSX1P28360 ZNF705A-201ENST00000359286 3455 ntAPPRIS P1 TSL 2 BASIC4.12□□□□□ -1.75
MSX1P28360 C18orf54-202ENST00000382911 4056 ntTSL 5 BASIC4.12□□□□□ -1.75
MSX1P28360 EMSY-207ENST00000525919 4074 ntAPPRIS ALT1 TSL 1 (best) BASIC4.12□□□□□ -1.75
MSX1P28360 VPS13C-202ENST00000261517 13400 ntAPPRIS ALT2 TSL 1 (best) BASIC4.12□□□□□ -1.75
MSX1P28360 ADAM29-211ENST00000514159 3010 ntAPPRIS P1 TSL 4 BASIC4.12□□□□□ -1.75
MSX1P28360 C6orf10-207ENST00000533191 2170 ntAPPRIS ALT2 TSL 1 (best) BASIC4.12□□□□□ -1.75
MSX1P28360 PCDH11X-204ENST00000373088 4069 ntAPPRIS ALT2 TSL 1 (best) BASIC4.12□□□□□ -1.75
MSX1P28360 C12orf45-204ENST00000552951 23529 ntAPPRIS P1 TSL 1 (best) BASIC4.12□□□□□ -1.75
MSX1P28360 AP002088.1-201ENST00000382740 395 ntBASIC4.12□□□□□ -1.75
MSX1P28360 RNU6-1279P-201ENST00000383917 103 ntBASIC4.12□□□□□ -1.75
MSX1P28360 U8.12-201ENST00000384701 133 ntBASIC4.12□□□□□ -1.75
MSX1P28360 RNU6ATAC34P-201ENST00000408879 121 ntBASIC4.12□□□□□ -1.75
MSX1P28360 CYCSP49-201ENST00000420810 319 ntBASIC4.12□□□□□ -1.75
MSX1P28360 AL139281.1-201ENST00000422120 335 ntBASIC4.12□□□□□ -1.75
MSX1P28360 AC245047.4-201ENST00000433189 144 ntBASIC4.12□□□□□ -1.75
MSX1P28360 AL353748.1-201ENST00000440753 474 ntBASIC4.12□□□□□ -1.75
MSX1P28360 RPL23AP93-201ENST00000440847 484 ntBASIC4.12□□□□□ -1.75
MSX1P28360 AC107626.1-201ENST00000471084 183 ntBASIC4.12□□□□□ -1.75
MSX1P28360 S100A11P1-201ENST00000477525 312 ntBASIC4.12□□□□□ -1.75
MSX1P28360 RNU6-168P-201ENST00000516189 101 ntBASIC4.12□□□□□ -1.75
MSX1P28360 RNA5SP468-201ENST00000516782 93 ntBASIC4.12□□□□□ -1.75
MSX1P28360 RNU2-44P-201ENST00000516795 194 ntBASIC4.12□□□□□ -1.75
MSX1P28360 MFAP5-211ENST00000540087 492 ntTSL 1 (best) BASIC4.12□□□□□ -1.75
MSX1P28360 MIR378D2-201ENST00000580636 98 ntBASIC4.12□□□□□ -1.75
MSX1P28360 MIR3939-201ENST00000582614 106 ntBASIC4.12□□□□□ -1.75
MSX1P28360 AC100778.1-201ENST00000583579 332 ntTSL 3 BASIC4.12□□□□□ -1.75
MSX1P28360 LINC01533-202ENST00000588694 632 ntTSL 2 BASIC4.12□□□□□ -1.75
MSX1P28360 AC120024.3-201ENST00000603167 156 ntBASIC4.12□□□□□ -1.75
MSX1P28360 AC108081.1-201ENST00000604358 221 ntBASIC4.12□□□□□ -1.75
MSX1P28360 AC140113.4-201ENST00000622087 222 ntBASIC4.12□□□□□ -1.75
MSX1P28360 AL360270.1-201ENST00000440689 2359 ntTSL 2 BASIC4.12□□□□□ -1.75
MSX1P28360 MAPK10-206ENST00000395161 4186 ntTSL 5 BASIC4.12□□□□□ -1.75
MSX1P28360 AC092435.4-201ENST00000623012 4159 ntBASIC4.12□□□□□ -1.75
MSX1P28360 C2CD6-204ENST00000450242 2571 ntAPPRIS ALT2 TSL 1 (best) BASIC4.11□□□□□ -1.75
MSX1P28360 RIMS2-201ENST00000262231 3854 ntTSL 1 (best) BASIC4.11□□□□□ -1.75
MSX1P28360 RIMS1-204ENST00000401910 3542 ntTSL 2 BASIC4.11□□□□□ -1.75
MSX1P28360 PHEX-201ENST00000379374 6172 ntAPPRIS P1 TSL 1 (best) BASIC4.11□□□□□ -1.75
MSX1P28360 COPS2-202ENST00000388901 6628 ntAPPRIS P1 TSL 1 (best) BASIC4.11□□□□□ -1.75
MSX1P28360 RNA5SP388-201ENST00000362584 119 ntBASIC4.11□□□□□ -1.75
MSX1P28360 RNU4-15P-201ENST00000362613 141 ntBASIC4.11□□□□□ -1.75
MSX1P28360 AL512604.1-201ENST00000404812 257 ntBASIC4.11□□□□□ -1.75
MSX1P28360 SNORA36B-201ENST00000410438 131 ntBASIC4.11□□□□□ -1.75
MSX1P28360 SRIP1-201ENST00000489235 288 ntBASIC4.11□□□□□ -1.75
MSX1P28360 AC093297.2-204ENST00000508945 295 ntTSL 3 BASIC4.11□□□□□ -1.75
Retrieved 100 of 98,524 protein–RNA pairs in 160 ms