Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 AC117394.2-201ENST00000487827 323 ntTSL 3 BASIC3.96□□□□□ -1.78
COL8A1P27658 AC114741.1-201ENST00000504357 464 ntTSL 2 BASIC3.96□□□□□ -1.78
COL8A1P27658 SNORA31.16-201ENST00000516773 139 ntBASIC3.96□□□□□ -1.78
COL8A1P27658 SNORD115-40-201ENST00000606510 82 ntBASIC3.96□□□□□ -1.78
COL8A1P27658 SNORD11B-201ENST00000607707 90 ntBASIC3.96□□□□□ -1.78
COL8A1P27658 AL160408.5-201ENST00000607759 526 ntTSL 4 BASIC3.96□□□□□ -1.78
COL8A1P27658 AC099778.2-201ENST00000610904 211 ntBASIC3.96□□□□□ -1.78
COL8A1P27658 Y_RNA.818-201ENST00000618813 71 ntBASIC3.96□□□□□ -1.78
COL8A1P27658 AC012442.3-202ENST00000636742 206 ntBASIC3.96□□□□□ -1.78
COL8A1P27658 AASDH-207ENST00000513376 3241 ntTSL 1 (best) BASIC3.96□□□□□ -1.78
COL8A1P27658 FGD4-213ENST00000546442 3503 ntTSL 5 BASIC3.96□□□□□ -1.78
COL8A1P27658 AC126323.6-202ENST00000568092 3511 ntBASIC3.96□□□□□ -1.78
COL8A1P27658 ZGRF1-212ENST00000612287 2176 ntTSL 1 (best) BASIC3.96□□□□□ -1.78
COL8A1P27658 ROCK1P1-203ENST00000608049 2457 ntTSL 1 (best) BASIC3.96□□□□□ -1.78
COL8A1P27658 AL136164.3-201ENST00000624429 3978 ntBASIC3.95□□□□□ -1.78
COL8A1P27658 MPDZ-211ENST00000536827 6176 ntAPPRIS ALT2 TSL 1 (best) BASIC3.95□□□□□ -1.78
COL8A1P27658 AC010132.3-201ENST00000442788 2430 ntAPPRIS P5 TSL 5 BASIC3.95□□□□□ -1.78
COL8A1P27658 PPP1R9A-201ENST00000289495 3983 ntTSL 1 (best) BASIC3.95□□□□□ -1.78
COL8A1P27658 MAPK10-349ENST00000641767 3661 ntBASIC3.95□□□□□ -1.78
COL8A1P27658 RDH10-AS1-201ENST00000514599 3261 ntTSL 2 BASIC3.95□□□□□ -1.78
COL8A1P27658 CEP120-203ENST00000328236 4710 ntAPPRIS P1 TSL 5 BASIC3.95□□□□□ -1.78
COL8A1P27658 DAZ4-202ENST00000382314 3910 ntAPPRIS ALT2 TSL 5 BASIC3.95□□□□□ -1.78
COL8A1P27658 RPL36AP10-201ENST00000421785 322 ntBASIC3.95□□□□□ -1.78
COL8A1P27658 AC105940.1-201ENST00000434265 353 ntTSL 3 BASIC3.95□□□□□ -1.78
COL8A1P27658 PTMAP3-201ENST00000447474 330 ntBASIC3.95□□□□□ -1.78
COL8A1P27658 TTTY23B-202ENST00000451467 512 ntTSL 1 (best) BASIC3.95□□□□□ -1.78
COL8A1P27658 AL021397.1-201ENST00000451806 248 ntBASIC3.95□□□□□ -1.78
COL8A1P27658 TTTY23-201ENST00000452889 512 ntTSL 1 (best) BASIC3.95□□□□□ -1.78
COL8A1P27658 AC103975.1-201ENST00000482506 483 ntBASIC3.95□□□□□ -1.78
COL8A1P27658 AC123768.1-201ENST00000486285 432 ntTSL 3 BASIC3.95□□□□□ -1.78
COL8A1P27658 SNORA74D-201ENST00000516404 141 ntBASIC3.95□□□□□ -1.78
COL8A1P27658 RNU6-344P-201ENST00000516635 111 ntBASIC3.95□□□□□ -1.78
COL8A1P27658 RNU1-104P-201ENST00000517280 175 ntBASIC3.95□□□□□ -1.78
COL8A1P27658 TVP23BP1-201ENST00000557500 617 ntBASIC3.95□□□□□ -1.78
COL8A1P27658 RN7SL600P-201ENST00000581811 299 ntBASIC3.95□□□□□ -1.78
COL8A1P27658 LINC01482-203ENST00000589610 468 ntTSL 3 BASIC3.95□□□□□ -1.78
COL8A1P27658 AC007179.3-201ENST00000604976 235 ntBASIC3.95□□□□□ -1.78
COL8A1P27658 ST7-OT4_2.1-201ENST00000619089 172 ntBASIC3.95□□□□□ -1.78
COL8A1P27658 SPTY2D1-AS1-205ENST00000635674 450 ntAPPRIS ALT2 TSL 2 BASIC3.95□□□□□ -1.78
COL8A1P27658 MIR3202-2-201ENST00000635980 79 ntBASIC3.95□□□□□ -1.78
COL8A1P27658 MIR3529-201ENST00000637713 78 ntBASIC3.95□□□□□ -1.78
COL8A1P27658 IFI44L-201ENST00000370751 5874 ntAPPRIS P1 TSL 1 (best) BASIC3.95□□□□□ -1.78
COL8A1P27658 ACE2-202ENST00000427411 3507 ntAPPRIS P1 TSL 1 (best) BASIC3.95□□□□□ -1.78
COL8A1P27658 SEC31A-201ENST00000264405 3447 ntTSL 2 BASIC3.95□□□□□ -1.78
COL8A1P27658 SSR1-202ENST00000397511 3248 ntTSL 5 BASIC3.95□□□□□ -1.78
COL8A1P27658 ARHGAP42-201ENST00000298815 4752 ntAPPRIS P1 TSL 5 BASIC3.95□□□□□ -1.78
COL8A1P27658 CD200R1-204ENST00000471858 3679 ntAPPRIS ALT2 TSL 1 (best) BASIC3.95□□□□□ -1.78
COL8A1P27658 SLC44A5-201ENST00000370855 4406 ntAPPRIS P3 TSL 1 (best) BASIC3.95□□□□□ -1.78
COL8A1P27658 CNOT4-202ENST00000356162 2594 ntTSL 5 BASIC3.95□□□□□ -1.78
COL8A1P27658 FSBP-203ENST00000611249 2181 ntAPPRIS P1 TSL 5 BASIC3.95□□□□□ -1.78
COL8A1P27658 R3HCC1L-202ENST00000314594 3198 ntAPPRIS P1 TSL 5 BASIC3.94□□□□□ -1.78
COL8A1P27658 NFIB-211ENST00000606230 2311 ntTSL 5 BASIC3.94□□□□□ -1.78
COL8A1P27658 BIRC3-206ENST00000532808 4238 ntAPPRIS P1 TSL 5 BASIC3.94□□□□□ -1.78
COL8A1P27658 MIR331-201ENST00000362302 94 ntBASIC3.94□□□□□ -1.78
COL8A1P27658 RNU6-1296P-201ENST00000383879 107 ntBASIC3.94□□□□□ -1.78
COL8A1P27658 MIR7-3-201ENST00000384898 110 ntBASIC3.94□□□□□ -1.78
COL8A1P27658 MIR449B-201ENST00000384995 97 ntBASIC3.94□□□□□ -1.78
COL8A1P27658 MIR208B-201ENST00000401172 77 ntBASIC3.94□□□□□ -1.78
COL8A1P27658 RNA5SP136-201ENST00000410906 107 ntBASIC3.94□□□□□ -1.78
COL8A1P27658 AC005300.1-201ENST00000428401 373 ntBASIC3.94□□□□□ -1.78
COL8A1P27658 MTATP8P2-201ENST00000435212 202 ntBASIC3.94□□□□□ -1.78
COL8A1P27658 MTATP6P21-201ENST00000440681 189 ntBASIC3.94□□□□□ -1.78
COL8A1P27658 AC125238.1-201ENST00000448842 249 ntBASIC3.94□□□□□ -1.78
COL8A1P27658 RPL29-203ENST00000475248 551 ntAPPRIS P1 TSL 3 BASIC3.94□□□□□ -1.78
COL8A1P27658 RNU6-1299P-201ENST00000516316 100 ntBASIC3.94□□□□□ -1.78
COL8A1P27658 AL162713.1-201ENST00000604480 262 ntBASIC3.94□□□□□ -1.78
COL8A1P27658 AP003357.1-201ENST00000604497 148 ntBASIC3.94□□□□□ -1.78
COL8A1P27658 MIR6134-201ENST00000617606 109 ntBASIC3.94□□□□□ -1.78
COL8A1P27658 MALAT1.1-201ENST00000618249 95 ntBASIC3.94□□□□□ -1.78
COL8A1P27658 AL590808.1-201ENST00000618696 141 ntBASIC3.94□□□□□ -1.78
COL8A1P27658 AC068205.3-201ENST00000636385 468 ntBASIC3.94□□□□□ -1.78
COL8A1P27658 SMG1P3-204ENST00000520823 3194 ntTSL 5 BASIC3.94□□□□□ -1.78
COL8A1P27658 CTNNA3-203ENST00000433211 10675 ntAPPRIS P1 TSL 1 (best) BASIC3.94□□□□□ -1.78
COL8A1P27658 GMNC-201ENST00000442080 3422 ntAPPRIS P1 TSL 5 BASIC3.94□□□□□ -1.78
COL8A1P27658 GABRA2-211ENST00000514090 3401 ntAPPRIS P1 TSL 5 BASIC3.94□□□□□ -1.78
COL8A1P27658 NOX4-202ENST00000343727 3347 ntTSL 2 BASIC3.94□□□□□ -1.78
COL8A1P27658 CSNK1G3-203ENST00000361991 2424 ntAPPRIS P3 TSL 1 (best) BASIC3.94□□□□□ -1.78
COL8A1P27658 NUP205-201ENST00000285968 6266 ntAPPRIS P1 TSL 1 (best) BASIC3.94□□□□□ -1.78
COL8A1P27658 MPDZ-215ENST00000541718 7603 ntAPPRIS P3 TSL 1 (best) BASIC3.94□□□□□ -1.78
COL8A1P27658 SMG1P6-201ENST00000532337 2930 ntBASIC3.94□□□□□ -1.78
COL8A1P27658 SYT14-206ENST00000537238 5208 ntAPPRIS ALT2 TSL 5 BASIC3.93□□□□□ -1.78
COL8A1P27658 PCDH11X-207ENST00000406881 4156 ntAPPRIS ALT2 TSL 1 (best) BASIC3.93□□□□□ -1.78
COL8A1P27658 AL513302.2-201ENST00000562313 1842 ntBASIC3.93□□□□□ -1.78
COL8A1P27658 PUS7L-201ENST00000344862 13593 ntAPPRIS P1 TSL 1 (best) BASIC3.93□□□□□ -1.78
COL8A1P27658 MANEA-201ENST00000358812 4575 ntAPPRIS P1 TSL 1 (best) BASIC3.93□□□□□ -1.78
COL8A1P27658 RNY1P10-201ENST00000363268 113 ntBASIC3.93□□□□□ -1.78
COL8A1P27658 RNA5SP130-201ENST00000364431 114 ntBASIC3.93□□□□□ -1.78
COL8A1P27658 SNORD87-201ENST00000364849 89 ntBASIC3.93□□□□□ -1.78
COL8A1P27658 RPL21P65-201ENST00000406094 466 ntBASIC3.93□□□□□ -1.78
COL8A1P27658 RN7SKP16-201ENST00000410180 299 ntBASIC3.93□□□□□ -1.78
COL8A1P27658 AL365496.1-201ENST00000426885 215 ntBASIC3.93□□□□□ -1.78
COL8A1P27658 CYP1B1-AS1-202ENST00000427168 484 ntTSL 4 BASIC3.93□□□□□ -1.78
COL8A1P27658 TAB3-AS2-201ENST00000445240 292 ntTSL 5 BASIC3.93□□□□□ -1.78
COL8A1P27658 Z75741.1-201ENST00000446793 314 ntBASIC3.93□□□□□ -1.78
COL8A1P27658 NDUFS5P3-201ENST00000450668 321 ntBASIC3.93□□□□□ -1.78
COL8A1P27658 AC090525.1-201ENST00000479116 478 ntBASIC3.93□□□□□ -1.78
COL8A1P27658 AC126121.2-201ENST00000486137 698 ntTSL 3 BASIC3.93□□□□□ -1.78
COL8A1P27658 RNA5SP153-201ENST00000516498 76 ntBASIC3.93□□□□□ -1.78
COL8A1P27658 RNU1-103P-201ENST00000516502 125 ntBASIC3.93□□□□□ -1.78
COL8A1P27658 UBE2Q2P6-201ENST00000612666 153 ntBASIC3.93□□□□□ -1.78
Retrieved 100 of 98,524 protein–RNA pairs in 134.9 ms